Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0394
(800 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC649.04 |uvi15||UV-induced protein Uvi15|Schizosaccharomyces ... 35 0.012
SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces pom... 32 0.083
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 29 1.0
SPAC1F3.01 |rrp6|SPAC3H8.11|exosome subunit Rrp6 |Schizosaccharo... 28 1.8
SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces pomb... 26 5.4
SPAC57A10.08c |||esterase/lipase |Schizosaccharomyces pombe|chr ... 26 5.4
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom... 26 7.2
SPAC3G9.05 |||GTPase activating protein |Schizosaccharomyces pom... 26 7.2
SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein ... 25 9.5
SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cu... 25 9.5
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 25 9.5
SPBC9B6.11c |||CCR4/nocturin family endoribonuclease|Schizosacch... 25 9.5
SPBP4H10.10 |||rhomboid family protease|Schizosaccharomyces pomb... 25 9.5
SPCC1840.04 |||caspase|Schizosaccharomyces pombe|chr 3|||Manual 25 9.5
>SPBC649.04 |uvi15||UV-induced protein Uvi15|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 87
Score = 35.1 bits (77), Expect = 0.012
Identities = 16/30 (53%), Positives = 17/30 (56%)
Frame = +3
Query: 240 PIQPINTYPQNNYAPPQNSYYPQNTYAPPQ 329
P P Y NY PPQ + YPQ YAPPQ
Sbjct: 14 PAPPQQAYGGPNYYPPQQN-YPQQGYAPPQ 42
Score = 34.3 bits (75), Expect = 0.020
Identities = 18/43 (41%), Positives = 19/43 (44%)
Frame = +3
Query: 210 PQNTWNAPPKPIQPINTYPQNNYAPPQNSYYPQNTYAPPQNTY 338
PQ + P P YPQ YAPPQ YPQ Y Q Y
Sbjct: 17 PQQAYGGP-NYYPPQQNYPQQGYAPPQG--YPQGGYPAQQPMY 56
>SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 204
Score = 32.3 bits (70), Expect = 0.083
Identities = 17/37 (45%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Frame = +3
Query: 222 WNAPPKPIQPINTYPQN-NYAPPQNSYYP-QNTYAPP 326
+ A P+P P YPQ Y P Q +YYP Q YA P
Sbjct: 96 YGAAPQPYPPQGGYPQQPYYYPNQPNYYPAQPAYAQP 132
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 28.7 bits (61), Expect = 1.0
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +3
Query: 192 PPIQWKPQNTWNAPPKPIQPINTYPQNN 275
P Q + +APP P+QP+N P +N
Sbjct: 1365 PKPQIPDSSNVHAPPPPVQPMNAMPSHN 1392
>SPAC1F3.01 |rrp6|SPAC3H8.11|exosome subunit Rrp6
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 777
Score = 27.9 bits (59), Expect = 1.8
Identities = 17/69 (24%), Positives = 33/69 (47%)
Frame = +2
Query: 188 EPAYPVETSKYVERSTQADPADKHLSPKQLRPPSKLILSSEYICSSSKHISSHLEHAFIS 367
EP+ P+E ER+ +P++ S + R K +S + ++H+S+ +
Sbjct: 666 EPSNPIE-----ERNEDIEPSEASTSVSKKRKQKKKKKNSGKLTIEAEHVSNDSPIINEA 720
Query: 368 DFDYNNSRS 394
FDY N ++
Sbjct: 721 PFDYKNQKN 729
>SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 224
Score = 26.2 bits (55), Expect = 5.4
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = +3
Query: 210 PQNTWNAPPKPIQPINTY--PQNNYAPPQNSYYPQNTYAPP 326
P + +N P Q Y PQ++YAPP S P+ +Y P
Sbjct: 99 PSSNYNTAKPPYQTSQFYARPQSSYAPPP-SGRPRISYPYP 138
Score = 25.4 bits (53), Expect = 9.5
Identities = 13/48 (27%), Positives = 20/48 (41%)
Frame = +3
Query: 195 PIQWKPQNTWNAPPKPIQPINTYPQNNYAPPQNSYYPQNTYAPPQNTY 338
P +P N+W + P +NY + Y YA PQ++Y
Sbjct: 77 PTSQRP-NSWQPGNASTMYASPPPSSNYNTAKPPYQTSQFYARPQSSY 123
>SPAC57A10.08c |||esterase/lipase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 364
Score = 26.2 bits (55), Expect = 5.4
Identities = 13/48 (27%), Positives = 25/48 (52%)
Frame = +2
Query: 221 VERSTQADPADKHLSPKQLRPPSKLILSSEYICSSSKHISSHLEHAFI 364
+ER ++ + K+LSP SK+ +SS+Y + ++ +L I
Sbjct: 43 IERRSKRESLSKNLSPNDNSHNSKIDISSDYQLLNEYKVAYYLRPGII 90
>SPBC211.03c |||guanyl-nucleotide exchange
factor|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1462
Score = 25.8 bits (54), Expect = 7.2
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +2
Query: 326 SKHISSHLEHAFISDFDYNNSRSSDQERNVL 418
+K +SH+ +AFIS FD+ R + R +L
Sbjct: 605 TKGSNSHILNAFISAFDFKGKRIDEALRLLL 635
>SPAC3G9.05 |||GTPase activating protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 659
Score = 25.8 bits (54), Expect = 7.2
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = +3
Query: 252 INTYPQNNYAPPQNSYYPQNTYA 320
IN P+ + PP +SY+P+ +A
Sbjct: 60 INNDPKVRFLPPVDSYHPKRNHA 82
>SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein
Lsb1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 296
Score = 25.4 bits (53), Expect = 9.5
Identities = 15/39 (38%), Positives = 17/39 (43%), Gaps = 2/39 (5%)
Frame = +3
Query: 228 APPKPIQPINTYP--QNNYAPPQNSYYPQNTYAPPQNTY 338
A P P P YP ++ APP Y Q Y P Q Y
Sbjct: 204 AQPPPPPPQQNYPPAASSSAPPMQ--YQQTAYPPQQAPY 240
>SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cuf1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 411
Score = 25.4 bits (53), Expect = 9.5
Identities = 11/37 (29%), Positives = 18/37 (48%)
Frame = +3
Query: 390 VPVIKNEMYYGDNGXYKYEYQIXDGTHVGEEXYFTNP 500
VP+ + YG + Y YE I + T+ + Y +P
Sbjct: 272 VPLPSSTNTYGPSNSYGYEININESTNHVDSSYLPHP 308
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 25.4 bits (53), Expect = 9.5
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = +3
Query: 192 PPIQWKPQNTWNAPPKPIQPINTYPQNN 275
PP + N+PP+PI P++ P N
Sbjct: 258 PPSNGTVSSPPNSPPRPIAPVSMNPAIN 285
>SPBC9B6.11c |||CCR4/nocturin family
endoribonuclease|Schizosaccharomyces pombe|chr
2|||Manual
Length = 502
Score = 25.4 bits (53), Expect = 9.5
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +3
Query: 210 PQNTWNAPPKPIQPINTYPQNNYAPPQNSYYPQNTYAP 323
P++T + P K I + QN+Y P S+Y Q+ P
Sbjct: 370 PESTASTPKKRILHV----QNDYVPHYRSFYQQHEQNP 403
>SPBP4H10.10 |||rhomboid family protease|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 392
Score = 25.4 bits (53), Expect = 9.5
Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = -1
Query: 578 VDGVNFAISSSV-RVPALFHQACLFCVGI 495
V G F + SS+ +PA++ + L+CVGI
Sbjct: 352 VSGTFFGVVSSLFLLPAMWKRRSLYCVGI 380
>SPCC1840.04 |||caspase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 425
Score = 25.4 bits (53), Expect = 9.5
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
Frame = +3
Query: 216 NTWNAPPKPIQPINTYPQNNYAPPQNSYYPQNT---YAPPQ 329
N +N P P NTY + NY+ P N NT Y PP+
Sbjct: 6 NPYNGGQYP--PYNTYTRPNYS-PNNGSQSNNTVHQYQPPR 43
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,897,807
Number of Sequences: 5004
Number of extensions: 55980
Number of successful extensions: 190
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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