Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0394
(800 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0164 - 1326002-1326409,1326410-1326428,1326523-1326647,132... 37 0.016
01_06_1682 - 39130696-39131705,39132355-39132583 37 0.016
07_03_0600 + 19866757-19867218,19867920-19868429 32 0.46
01_01_0446 + 3321832-3322232,3322398-3322455,3322810-3323748,332... 31 1.1
03_03_0008 - 13674602-13674708,13675272-13675439,13676169-136767... 31 1.4
05_01_0142 - 940421-940701,941262-941574 30 1.9
03_05_0388 + 23726957-23727418,23730016-23730262,23731072-237312... 30 1.9
10_08_0608 + 19184722-19185224,19185331-19185410,19186048-191862... 30 2.5
07_03_1067 + 23728642-23728690,23728832-23729010 30 2.5
02_01_0302 - 2021221-2023305 30 2.5
01_06_0747 - 31645136-31646521,31647870-31648142,31649080-316491... 30 2.5
11_01_0648 + 5254272-5254468,5254491-5254845,5254945-5255292 29 3.3
01_06_0046 + 25943183-25943590 29 3.3
08_01_0080 + 566509-566746,566904-567151,567347-567532,567639-56... 29 4.3
07_03_1160 - 24430240-24431268 29 4.3
11_01_0385 + 2915532-2916482 29 5.7
09_04_0430 + 17502387-17503505 29 5.7
05_01_0492 - 4102379-4103494,4104105-4104383,4105395-4105724 29 5.7
02_01_0077 - 546033-546223,546314-546566,546635-546865,547165-54... 29 5.7
04_03_0904 + 20717005-20718087 28 7.5
10_01_0129 + 1535823-1537196 28 9.9
03_06_0758 - 36052261-36052301,36052463-36052697,36052895-360529... 28 9.9
>03_01_0164 -
1326002-1326409,1326410-1326428,1326523-1326647,
1327482-1327530,1328834-1328855,1328969-1329071
Length = 241
Score = 37.1 bits (82), Expect = 0.016
Identities = 19/49 (38%), Positives = 21/49 (42%)
Frame = +3
Query: 192 PPIQWKPQNTWNAPPKPIQPINTYPQNNYAPPQNSYYPQNTYAPPQNTY 338
PP Q P + PP YP PP SY PQ +Y PPQ Y
Sbjct: 193 PPAQGYPPAAY--PPAGYPQGGAYPPPGSYPPPGSYPPQGSYPPPQGYY 239
>01_06_1682 - 39130696-39131705,39132355-39132583
Length = 412
Score = 37.1 bits (82), Expect = 0.016
Identities = 23/60 (38%), Positives = 29/60 (48%), Gaps = 11/60 (18%)
Frame = +3
Query: 192 PPIQWKPQNTWNAPPKPIQ-PINTY-------PQNNYAPPQ---NSYYPQNTYAPPQNTY 338
PP Q+ P N++ APP P Y P N Y PP NS PQ ++PP N+Y
Sbjct: 239 PPYQYTPPNSYQAPPTSYNHPPPPYGYNSPIPPTNKYLPPPYYFNSPPPQYQHSPPANSY 298
Score = 32.3 bits (70), Expect = 0.46
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = +3
Query: 195 PIQWKPQNTWNAPPKPIQPINTYPQNNY-APPQNSYYPQNTYAPPQNTY 338
P Q+ P +N P P + PQ++Y +PP Y P N+Y P +Y
Sbjct: 209 PNQFSPP-PFNKFPPPSHQYPSPPQSSYHSPPPYQYTPPNSYQAPPTSY 256
Score = 31.1 bits (67), Expect = 1.1
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Frame = +3
Query: 192 PPIQWK-PQNTWNAPPKPIQPINTYPQNNYAPPQ---NSYYPQNTYAPP 326
PP+ + P + +PP P N+ P N+Y+PP S P Y+PP
Sbjct: 301 PPLAHQYPPPPYKSPPIPPYYFNSPPANHYSPPPYNFGSSPPTYQYSPP 349
>07_03_0600 + 19866757-19867218,19867920-19868429
Length = 323
Score = 32.3 bits (70), Expect = 0.46
Identities = 20/49 (40%), Positives = 21/49 (42%)
Frame = +3
Query: 192 PPIQWKPQNTWNAPPKPIQPINTYPQNNYAPPQNSYYPQNTYAPPQNTY 338
PP Q +P W PP P P PQ PPQ P YAPP Y
Sbjct: 62 PPPQ-QPPAMWGQPPPP--P----PQYAPPPPQQFQLPHQQYAPPPQHY 103
>01_01_0446 +
3321832-3322232,3322398-3322455,3322810-3323748,
3324504-3324654,3324740-3324818,3325826-3325934
Length = 578
Score = 31.1 bits (67), Expect = 1.1
Identities = 18/53 (33%), Positives = 23/53 (43%), Gaps = 6/53 (11%)
Frame = +3
Query: 192 PPIQWKPQNTWNAPPKPIQPINTYPQNNYAPPQNSY------YPQNTYAPPQN 332
PP P + APP N Y ++ PP +SY YP + APP N
Sbjct: 308 PPSYGGPGGDYAAPPSSYGGNNAYNSDSAVPPPSSYGGGPGSYPPSYGAPPPN 360
>03_03_0008 - 13674602-13674708,13675272-13675439,13676169-13676787,
13676868-13677330,13677855-13678036,13678093-13678235,
13678315-13678423,13679000-13679456,13680490-13682473,
13682507-13682626,13682920-13682971
Length = 1467
Score = 30.7 bits (66), Expect = 1.4
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Frame = +3
Query: 231 PPKPIQPIN-TYPQNNYAPPQNSYYPQNTYAPP 326
PP PI P+N P N+ P Y+ N + PP
Sbjct: 1213 PPPPIAPLNPPGPHGNFPAPPAPYHGNNYHQPP 1245
Score = 27.9 bits (59), Expect = 9.9
Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Frame = +2
Query: 119 STKQKLIPQHGC*CIQLVRTFEPEPAYPVE--TSKYVERSTQADPADKHLSPKQLRPPSK 292
ST +P + R F ++P +KY+ + PA K S KQL P ++
Sbjct: 739 STSPDSMPMKELIAVAQARRFSRSTSFPDNFLNAKYIPETVVDTPAFKEGSQKQLSPLNR 798
Query: 293 LILSS 307
+I S+
Sbjct: 799 IIRST 803
>05_01_0142 - 940421-940701,941262-941574
Length = 197
Score = 30.3 bits (65), Expect = 1.9
Identities = 17/49 (34%), Positives = 20/49 (40%)
Frame = +3
Query: 192 PPIQWKPQNTWNAPPKPIQPINTYPQNNYAPPQNSYYPQNTYAPPQNTY 338
PP Q P + PP P P Y PP +Y P PPQ+ Y
Sbjct: 30 PPHQGYPPQGYPPPPGAYPP----PPGAYPPPPGAYPPPPGAYPPQHGY 74
>03_05_0388 +
23726957-23727418,23730016-23730262,23731072-23731220,
23731313-23731597,23731665-23731889,23734251-23734445
Length = 520
Score = 30.3 bits (65), Expect = 1.9
Identities = 14/41 (34%), Positives = 18/41 (43%), Gaps = 4/41 (9%)
Frame = +3
Query: 195 PIQWKPQNTWNAPPKPIQP----INTYPQNNYAPPQNSYYP 305
P W P W PP + P +PQ PQ++YYP
Sbjct: 301 PQPWGPPQPWGPPPSHLPPGGPGYGGHPQFMPPRPQDNYYP 341
>10_08_0608 + 19184722-19185224,19185331-19185410,19186048-19186235,
19187021-19187927,19188015-19188142,19189270-19189356,
19189422-19189472,19189582-19189668,19189746-19189873,
19190469-19190608,19190721-19190882,19190964-19192733,
19192807-19192922,19193077-19193227,19193243-19193371,
19193598-19194139
Length = 1722
Score = 29.9 bits (64), Expect = 2.5
Identities = 20/50 (40%), Positives = 29/50 (58%)
Frame = +2
Query: 182 EPEPAYPVETSKYVERSTQADPADKHLSPKQLRPPSKLILSSEYICSSSK 331
EP PA +E + + ++D A LSP++ R PS L LSS Y+ S+K
Sbjct: 1437 EPSPA--LEKKRIEKVKPKSDAA---LSPEESRKPSGLQLSSTYLQGSTK 1481
>07_03_1067 + 23728642-23728690,23728832-23729010
Length = 75
Score = 29.9 bits (64), Expect = 2.5
Identities = 14/33 (42%), Positives = 14/33 (42%)
Frame = +3
Query: 231 PPKPIQPINTYPQNNYAPPQNSYYPQNTYAPPQ 329
PP P YP Y PPQ Y P PPQ
Sbjct: 30 PPAGYPPAQGYPPAGY-PPQQGYPPPYAQPPPQ 61
>02_01_0302 - 2021221-2023305
Length = 694
Score = 29.9 bits (64), Expect = 2.5
Identities = 16/49 (32%), Positives = 22/49 (44%)
Frame = +3
Query: 192 PPIQWKPQNTWNAPPKPIQPINTYPQNNYAPPQNSYYPQNTYAPPQNTY 338
PP PQ+T P P P+ P PP ++ P +APP +Y
Sbjct: 528 PPSHSPPQSTPTHPSYPSPPVTYTP----PPPTSADRPDVRFAPPPGSY 572
>01_06_0747 -
31645136-31646521,31647870-31648142,31649080-31649148,
31649486-31649614
Length = 618
Score = 29.9 bits (64), Expect = 2.5
Identities = 18/53 (33%), Positives = 23/53 (43%), Gaps = 5/53 (9%)
Frame = +3
Query: 192 PPIQWKPQNTWNAPPKPIQPINTYPQNNYAPPQN-----SYYPQNTYAPPQNT 335
PP+Q + NT PP+ +QP P N PQ Y P + PP T
Sbjct: 397 PPVQPQQSNT-QLPPQAMQPQQHPPVQNQMRPQTPPNYPHYQPHQSLNPPPET 448
>11_01_0648 + 5254272-5254468,5254491-5254845,5254945-5255292
Length = 299
Score = 29.5 bits (63), Expect = 3.3
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +2
Query: 182 EPEPAYPVETSKYVERSTQADPADKHLSPKQLRP 283
+P P Y ET+ + + +D ADK + P+++ P
Sbjct: 260 QPRPYYQGETNGVAKEAPSSDSADKEIQPEKVVP 293
>01_06_0046 + 25943183-25943590
Length = 135
Score = 29.5 bits (63), Expect = 3.3
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = +3
Query: 228 APPKPIQPINTYPQNNYAPPQNSYYPQNTYAPPQNTY 338
+PP P P P Y+PP +YYP + PP Y
Sbjct: 49 SPPPPALPPPP-PYYYYSPPPPAYYPGSYCPPPPAAY 84
>08_01_0080 +
566509-566746,566904-567151,567347-567532,567639-567734,
567836-567907,567990-568106,570531-571676
Length = 700
Score = 29.1 bits (62), Expect = 4.3
Identities = 18/54 (33%), Positives = 23/54 (42%), Gaps = 6/54 (11%)
Frame = +3
Query: 195 PIQWKPQNTWNAPPKPIQPINTYPQNNYAPPQNSYY------PQNTYAPPQNTY 338
P +PQ +APP+ P P+ N P YY PQ Y P Q+ Y
Sbjct: 440 PNYGQPQYPQSAPPQNYGPGYGDPRYNAPAPNQQYYGQPPAGPQQGYPPQQDPY 493
>07_03_1160 - 24430240-24431268
Length = 342
Score = 29.1 bits (62), Expect = 4.3
Identities = 18/47 (38%), Positives = 18/47 (38%), Gaps = 4/47 (8%)
Frame = +3
Query: 210 PQNTWNAPPKPIQPINTYPQNNYAPPQ----NSYYPQNTYAPPQNTY 338
PQ N PPKP QP P P Q N P PPQ Y
Sbjct: 272 PQPNPNGPPKPDQPPQPNPNGPSKPDQPPRPNPDMPPKPDQPPQPEY 318
>11_01_0385 + 2915532-2916482
Length = 316
Score = 28.7 bits (61), Expect = 5.7
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = +3
Query: 201 QWKPQNTWNAPPKPIQPINTYPQNNYAPPQNSYYPQNTYAPP 326
QW P +N PP P P +P N + PP ++P T A P
Sbjct: 178 QWPPLPPFNQPPTPEWP---HPGNKW-PPLPPFHPPPTPAWP 215
>09_04_0430 + 17502387-17503505
Length = 372
Score = 28.7 bits (61), Expect = 5.7
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +3
Query: 231 PPKPIQPINTYPQNNYAPPQNSYYPQNTYAPPQNT 335
PP P+Q P PP+ + P APPQ+T
Sbjct: 159 PPAPMQQPQPQPPPQPTPPRAAPLPTPPRAPPQST 193
>05_01_0492 - 4102379-4103494,4104105-4104383,4105395-4105724
Length = 574
Score = 28.7 bits (61), Expect = 5.7
Identities = 16/52 (30%), Positives = 22/52 (42%), Gaps = 2/52 (3%)
Frame = +3
Query: 192 PPIQWKPQNTWNAPPKPIQPINTYPQNNYAP--PQNSYYPQNTYAPPQNTYR 341
P Q Q + P +Q + P AP PQ SYYP + P T++
Sbjct: 283 PQSQPPSQFPGHLPHSQVQSVPPAPPTPLAPTIPQESYYPPSAVQPTDTTHQ 334
>02_01_0077 -
546033-546223,546314-546566,546635-546865,547165-547331,
547369-548008
Length = 493
Score = 28.7 bits (61), Expect = 5.7
Identities = 17/46 (36%), Positives = 20/46 (43%)
Frame = +3
Query: 192 PPIQWKPQNTWNAPPKPIQPINTYPQNNYAPPQNSYYPQNTYAPPQ 329
PP Q +P APP P Q P + PP+ P T PPQ
Sbjct: 67 PPSQ-EPDTPEPAPPTPPQQ-QQQPWQSPLPPRREPAPPRTVVPPQ 110
>04_03_0904 + 20717005-20718087
Length = 360
Score = 28.3 bits (60), Expect = 7.5
Identities = 21/51 (41%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Frame = +3
Query: 195 PIQWKPQNTWNAPP--KPIQPINTYPQNNYAPPQNSYYPQNTYAPPQNTYR 341
P +KPQ N PP KP QP P Y P +Y PQ PP TY+
Sbjct: 215 PPSYKPQPKPNPPPTYKP-QP-KPNPPPTYKPAPPTYKPQPKPNPPP-TYK 262
Score = 28.3 bits (60), Expect = 7.5
Identities = 22/51 (43%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
Frame = +3
Query: 192 PPIQWKPQNTWNAPP--KPIQPINTY-PQNNYAPPQNSYYPQNTYAPPQNT 335
PP +KPQ N PP KP P TY PQ PP +Y PQ P T
Sbjct: 226 PPPTYKPQPKPNPPPTYKPAPP--TYKPQPKPNPPP-TYKPQPKPTPTPYT 273
>10_01_0129 + 1535823-1537196
Length = 457
Score = 27.9 bits (59), Expect = 9.9
Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Frame = +2
Query: 173 RTFEPEPAYPVETSKYVERSTQADPADKHLSPK-QLRPPSKLILSSEYICSSSKHISSHL 349
R EP PV + E + P + + + LR P+ +L +C S +HI+S
Sbjct: 74 RRGEPPSPSPVPGTATSEAAVAGLPIPEEIQEEILLRLPANSVLHCRAVCRSWRHIAS-- 131
Query: 350 EHAFI 364
HAF+
Sbjct: 132 THAFL 136
>03_06_0758 -
36052261-36052301,36052463-36052697,36052895-36052966,
36056477-36056567,36056650-36056872,36056964-36057300,
36057406-36057588
Length = 393
Score = 27.9 bits (59), Expect = 9.9
Identities = 10/33 (30%), Positives = 16/33 (48%)
Frame = +3
Query: 231 PPKPIQPINTYPQNNYAPPQNSYYPQNTYAPPQ 329
PP+ ++P+ +P APP YY P+
Sbjct: 193 PPEALRPLPPFPPTMLAPPAYPYYHPQPQPDPE 225
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,859,417
Number of Sequences: 37544
Number of extensions: 415734
Number of successful extensions: 1374
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1240
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1351
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2174172540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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