Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0394
         (800 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21376| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.029
SB_27756| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.088
SB_50258| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_8305| Best HMM Match : Plasmodium_HRP (HMM E-Value=8.8)             30   1.9  
SB_27977| Best HMM Match : ARID (HMM E-Value=1.6e-26)                  30   2.5  
SB_51714| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_46326| Best HMM Match : Scramblase (HMM E-Value=0)                  29   3.3  
SB_53344| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.4  
SB_3702| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.4  
SB_28586| Best HMM Match : DNA_primase_lrg (HMM E-Value=3.7e-05)       29   5.8  
SB_17603| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.8  
SB_55550| Best HMM Match : PLAC8 (HMM E-Value=0.00022)                 28   7.7  
SB_31091| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.7  
SB_11832| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.7  
SB_3180| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.7  

>SB_21376| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 290

 Score = 36.3 bits (80), Expect = 0.029
 Identities = 17/46 (36%), Positives = 19/46 (41%)
 Frame = +3

Query: 195 PIQWKPQNTWNAPPKPIQPINTYPQNNYAPPQNSYYPQNTYAPPQN 332
           P    P   +  PP P  P   YP     PP N+ YP   Y PP N
Sbjct: 139 PYPPSPNAPYPPPPNPPYPPPLYPPPPNPPPPNAPYPPPPYPPPPN 184



 Score = 34.7 bits (76), Expect = 0.088
 Identities = 15/34 (44%), Positives = 15/34 (44%)
 Frame = +3

Query: 231 PPKPIQPINTYPQNNYAPPQNSYYPQNTYAPPQN 332
           PP P  P    P   Y PP N  YP   Y PP N
Sbjct: 133 PPPPNAPYPPSPNAPYPPPPNPPYPPPLYPPPPN 166



 Score = 34.3 bits (75), Expect = 0.12
 Identities = 19/50 (38%), Positives = 20/50 (40%), Gaps = 3/50 (6%)
 Frame = +3

Query: 192 PPIQWKPQNTWNAPPKPIQPINTYPQNNYAPPQNSYY---PQNTYAPPQN 332
           PP    P   +  PP P  P   YP   Y PP N  Y   P   Y PP N
Sbjct: 151 PPNPPYPPPLYPPPPNPPPPNAPYPPPPYPPPPNPPYPPPPNPPYPPPPN 200



 Score = 33.1 bits (72), Expect = 0.27
 Identities = 18/50 (36%), Positives = 21/50 (42%), Gaps = 3/50 (6%)
 Frame = +3

Query: 192 PPIQWKPQNTWNAPPKPIQPINTYPQNNYAPPQNSYYPQN---TYAPPQN 332
           PP  + P      PP P  P    P   Y PP N+ YP +    Y PP N
Sbjct: 104 PPPPYPPPPNPPYPPPPNAPYPPPPNPPYPPPPNAPYPPSPNAPYPPPPN 153



 Score = 29.9 bits (64), Expect = 2.5
 Identities = 19/54 (35%), Positives = 22/54 (40%), Gaps = 7/54 (12%)
 Frame = +3

Query: 192 PPIQWKPQNTWNAPP-KPIQPINTYP---QNNYAPPQNSYY---PQNTYAPPQN 332
           PP  + P   +  PP  P  P   YP      Y PP N+ Y   P   Y PP N
Sbjct: 84  PPTNFSPNPPYPPPPYPPYPPPPPYPPPPNPPYPPPPNAPYPPPPNPPYPPPPN 137


>SB_27756| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 520

 Score = 34.7 bits (76), Expect = 0.088
 Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = +3

Query: 210 PQNTWNAPPKPIQPINTYPQNNYAPPQNSYY-PQNTYAPPQNTYR 341
           P  ++  P K  QP    P  +Y PP  SY  P  +Y PP  +Y+
Sbjct: 429 PHKSYQPPHKSYQP----PHKSYQPPHKSYQPPHKSYQPPHKSYQ 469



 Score = 34.7 bits (76), Expect = 0.088
 Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = +3

Query: 210 PQNTWNAPPKPIQPINTYPQNNYAPPQNSYY-PQNTYAPPQNTYR 341
           P  ++  P K  QP    P  +Y PP  SY  P  +Y PP  +Y+
Sbjct: 436 PHKSYQPPHKSYQP----PHKSYQPPHKSYQPPHKSYQPPHKSYQ 476



 Score = 34.3 bits (75), Expect = 0.12
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
 Frame = +3

Query: 204 WKPQNTWNAPPKPIQP-INTY--PQNNYAPPQNSYY-PQNTYAPPQNTYR 341
           + P++ +  P K  QP   +Y  P  +Y PP  SY  P  +Y PP  +Y+
Sbjct: 406 YDPESQFRPPFKSYQPPYKSYQPPHKSYQPPHKSYQPPHKSYQPPHKSYQ 455



 Score = 34.3 bits (75), Expect = 0.12
 Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = +3

Query: 210 PQNTWNAPPKPIQPINTYPQNNYAPPQNSYY-PQNTYAPPQNTYR 341
           P  ++  P K  QP    P  +Y PP  SY  P  +Y PP  +Y+
Sbjct: 422 PYKSYQPPHKSYQP----PHKSYQPPHKSYQPPHKSYQPPHKSYQ 462



 Score = 34.3 bits (75), Expect = 0.12
 Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = +3

Query: 210 PQNTWNAPPKPIQPINTYPQNNYAPPQNSYY-PQNTYAPPQNTYR 341
           P  ++  P K  QP    P  +Y PP  SY  P  +Y PP  +Y+
Sbjct: 443 PHKSYQPPHKSYQP----PHKSYQPPHKSYQPPHKSYQPPYKSYQ 483



 Score = 33.5 bits (73), Expect = 0.20
 Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = +3

Query: 210 PQNTWNAPPKPIQPINTYPQNNYAPPQNSYY-PQNTYAPPQNTYR 341
           P  ++  P K  QP    P  +Y PP  SY  P  +Y PP  +Y+
Sbjct: 457 PHKSYQPPHKSYQP----PHKSYQPPYKSYQPPYKSYQPPYKSYQ 497


>SB_50258| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 795

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +3

Query: 228 APPKPIQPINTYPQNNYAPPQNSYYPQNTYAPPQNT 335
           +PP    P    P ++ APP+ S  P  + APPQ T
Sbjct: 738 SPPSSKHPPTVSPSSSSAPPRPSTPPSVSSAPPQTT 773


>SB_8305| Best HMM Match : Plasmodium_HRP (HMM E-Value=8.8)
          Length = 366

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 17/43 (39%), Positives = 22/43 (51%)
 Frame = +3

Query: 207 KPQNTWNAPPKPIQPINTYPQNNYAPPQNSYYPQNTYAPPQNT 335
           +P N  N P   IQP +TY Q  +   QN   P +TY P  +T
Sbjct: 17  QPNNPCN-PTTYIQPKDTYNQTTHTTQQNK-QPNDTYNPTTHT 57


>SB_27977| Best HMM Match : ARID (HMM E-Value=1.6e-26)
          Length = 1536

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 13/44 (29%), Positives = 20/44 (45%)
 Frame = +3

Query: 210 PQNTWNAPPKPIQPINTYPQNNYAPPQNSYYPQNTYAPPQNTYR 341
           P + +NA  +P+Q  +  P            PQ   APP N+Y+
Sbjct: 645 PGSQYNASSEPVQMFDYLPPGQSGRSMRPSMPQYPQAPPYNSYQ 688


>SB_51714| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 542

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 17/43 (39%), Positives = 19/43 (44%)
 Frame = +3

Query: 213 QNTWNAPPKPIQPINTYPQNNYAPPQNSYYPQNTYAPPQNTYR 341
           +NT   PP P Q   T    N +PPQ      N   PP NT R
Sbjct: 475 ENTRRNPPPPSQDPTT---GNPSPPQEQPTTGNPTPPPNNTLR 514


>SB_46326| Best HMM Match : Scramblase (HMM E-Value=0)
          Length = 554

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 18/47 (38%), Positives = 20/47 (42%), Gaps = 4/47 (8%)
 Frame = +3

Query: 210 PQNTWNAPPKPIQP--INTYPQNNYAPPQNSYYP--QNTYAPPQNTY 338
           PQ   + PP  +Q       PQ  Y PPQ  Y P  Q  Y P Q  Y
Sbjct: 237 PQGYGHPPPVDVQSGYAGQPPQQGYPPPQGGYPPPQQPGYNPQQPGY 283


>SB_53344| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1554

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
 Frame = +3

Query: 192 PPIQWKPQNTWNAPP--KPIQPINTYPQNNYAPPQNSYYPQNT 314
           PP Q  P     APP  +P+QP + Y      PPQ   YP ++
Sbjct: 451 PPSQSTPSQ--QAPPTKQPMQPQHQYQARPGGPPQQRQYPPSS 491


>SB_3702| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 302

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +3

Query: 222 WNAPPKPIQPINTYPQNNYAPP 287
           ++ PP+    + TYP NNY PP
Sbjct: 14  YSQPPQGYPGVQTYPINNYPPP 35


>SB_28586| Best HMM Match : DNA_primase_lrg (HMM E-Value=3.7e-05)
          Length = 322

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +2

Query: 302 SSEYICSSSKHISSHLEHAFISDFDYNNSRSSDQ 403
           S EY    SKH+S  L H +IS+   + S ++D+
Sbjct: 71  SKEYKEKMSKHLSDFLPHLYISNMYSSKSTANDE 104


>SB_17603| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 826

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 4/49 (8%)
 Frame = +3

Query: 204 WKPQNTWNAPPKPIQPINTYPQNNYAPPQNSYYP---QNTYAP-PQNTY 338
           + P +  + PP P Q      Q +Y P     YP   Q +Y P PQ +Y
Sbjct: 302 YPPTSQQSYPPTPQQSYPLTSQQSYLPTSQQSYPPTSQQSYPPSPQQSY 350


>SB_55550| Best HMM Match : PLAC8 (HMM E-Value=0.00022)
          Length = 236

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 15/44 (34%), Positives = 18/44 (40%), Gaps = 3/44 (6%)
 Frame = +3

Query: 216 NTWNAPPKPIQPINT---YPQNNYAPPQNSYYPQNTYAPPQNTY 338
           N     P+  QP+     YP     PPQ  Y PQ  Y   Q T+
Sbjct: 11  NRMQEGPEMAQPVTGQPGYPPQQGYPPQQGYPPQQGYPHAQTTH 54


>SB_31091| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 607

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 12/25 (48%), Positives = 12/25 (48%)
 Frame = +3

Query: 228 APPKPIQPINTYPQNNYAPPQNSYY 302
           APP P  PI T       PP N YY
Sbjct: 41  APPMPTVPIQTPSAPYQPPPSNDYY 65


>SB_11832| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 493

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 19/48 (39%), Positives = 21/48 (43%), Gaps = 5/48 (10%)
 Frame = +3

Query: 198 IQWKPQNTWNAPPKPIQPINTYPQ---NNYA--PPQNSYYPQNTYAPP 326
           +Q +P      PP P    N YP     NYA  PP   Y PQ   APP
Sbjct: 356 LQGQPPPGTYYPPPPQGNYNQYPVPGGQNYAGAPPPPYYPPQEYQAPP 403


>SB_3180| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 351

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
 Frame = +2

Query: 185 PEPAYPVETSKYVERSTQADPADKH--LSPKQLRPPSK 292
           P+P  P+  SK   R T+   A KH  LS +  R P K
Sbjct: 307 PQPTKPLPASKEASRKTKKSAASKHRILSVRLHRKPKK 344


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,266,292
Number of Sequences: 59808
Number of extensions: 460661
Number of successful extensions: 1652
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1366
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1624
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2215746665
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)