Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0394
(800 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z78411-2|CAB01646.1| 285|Caenorhabditis elegans Hypothetical pr... 32 0.42
Z77663-5|CAB01215.1| 365|Caenorhabditis elegans Hypothetical pr... 31 1.3
Z70756-9|CAA94797.1| 275|Caenorhabditis elegans Hypothetical pr... 31 1.3
U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical pr... 31 1.3
AL031635-5|CAA21042.1| 1113|Caenorhabditis elegans Hypothetical ... 30 1.7
Z78013-1|CAB01425.3| 1140|Caenorhabditis elegans Hypothetical pr... 30 2.2
U49946-2|AAC48134.1| 950|Caenorhabditis elegans Diacylglycerol ... 30 2.2
AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical ... 29 3.9
Z96047-4|CAB09414.1| 796|Caenorhabditis elegans Hypothetical pr... 29 5.1
Z49127-2|CAA88949.1| 245|Caenorhabditis elegans Hypothetical pr... 29 5.1
AF125971-9|AAD14764.1| 442|Caenorhabditis elegans Hypothetical ... 28 6.8
Z81054-12|CAB61006.1| 1781|Caenorhabditis elegans Hypothetical p... 28 8.9
Z81032-6|CAB60991.1| 1781|Caenorhabditis elegans Hypothetical pr... 28 8.9
Z73105-4|CAA97443.2| 1406|Caenorhabditis elegans Hypothetical pr... 28 8.9
Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical pr... 28 8.9
Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical pr... 28 8.9
Z69384-10|CAA93420.2| 1406|Caenorhabditis elegans Hypothetical p... 28 8.9
U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog (hed... 28 8.9
U39678-12|AAK39209.2| 1185|Caenorhabditis elegans Hypothetical p... 28 8.9
AF038576-1|AAC38973.1| 1781|Caenorhabditis elegans CED-5 protein. 28 8.9
AC084152-9|AAK39313.1| 296|Caenorhabditis elegans Hypothetical ... 28 8.9
AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha... 28 8.9
AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha... 28 8.9
>Z78411-2|CAB01646.1| 285|Caenorhabditis elegans Hypothetical
protein F02D8.2 protein.
Length = 285
Score = 32.3 bits (70), Expect = 0.42
Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Frame = +3
Query: 210 PQNTWN-APPKPIQPINTYPQN--NYAPPQNSYYPQNTYAPPQNTY 338
PQ +N P P P N+Y NYA P N+Y Y+ P N+Y
Sbjct: 55 PQQRFNYGLPPPTPPANSYATAPANYAAPSNAYPFAPQYSIPMNSY 100
>Z77663-5|CAB01215.1| 365|Caenorhabditis elegans Hypothetical
protein F53F4.6 protein.
Length = 365
Score = 30.7 bits (66), Expect = 1.3
Identities = 11/39 (28%), Positives = 21/39 (53%)
Frame = +3
Query: 225 NAPPKPIQPINTYPQNNYAPPQNSYYPQNTYAPPQNTYR 341
N+PP+ P++ +P N Y+ +S++P Q Y+
Sbjct: 102 NSPPQSPTPLHHFPVNQYSSASSSHHPPTINQSQQQIYQ 140
>Z70756-9|CAA94797.1| 275|Caenorhabditis elegans Hypothetical
protein T06E4.11 protein.
Length = 275
Score = 30.7 bits (66), Expect = 1.3
Identities = 18/47 (38%), Positives = 20/47 (42%)
Frame = +3
Query: 192 PPIQWKPQNTWNAPPKPIQPINTYPQNNYAPPQNSYYPQNTYAPPQN 332
PP Q KPQ Q YPQ+ AP YPQ PPQ+
Sbjct: 30 PPSQQKPQGYTQGYQDSAQVPQGYPQSQQAPQAPQGYPQQ---PPQD 73
>U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical
protein C01G8.9a protein.
Length = 1724
Score = 30.7 bits (66), Expect = 1.3
Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +3
Query: 210 PQNTWNAPPKPIQPIN-TYPQNNYAPPQNSYYPQNTYAPP 326
PQ + P + P + + P N++APP ++PQ+ PP
Sbjct: 53 PQQPYEHPAQQHPPQHHSVPPNSFAPPPGQHHPQHPGMPP 92
>AL031635-5|CAA21042.1| 1113|Caenorhabditis elegans Hypothetical
protein Y47D3B.7 protein.
Length = 1113
Score = 30.3 bits (65), Expect = 1.7
Identities = 11/35 (31%), Positives = 18/35 (51%)
Frame = +3
Query: 195 PIQWKPQNTWNAPPKPIQPINTYPQNNYAPPQNSY 299
P+ + ++ W P QP + P N ++PPQ Y
Sbjct: 33 PLDFDMEHNWQEPGPSQQPDPSIPGNQHSPPQEYY 67
>Z78013-1|CAB01425.3| 1140|Caenorhabditis elegans Hypothetical
protein F15B9.4 protein.
Length = 1140
Score = 29.9 bits (64), Expect = 2.2
Identities = 19/47 (40%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
Frame = +3
Query: 192 PPIQWKPQNTWNAPPKPIQP-INTY-PQNNYAPPQNSYYPQNTYAPP 326
PP P NAPP P P IN + P PP P +T APP
Sbjct: 475 PPSSLLPLINTNAPPPPPMPSINGHAPNPPPPPPLLGIAPMSTNAPP 521
>U49946-2|AAC48134.1| 950|Caenorhabditis elegans Diacylglycerol
kinase protein 1,isoform a protein.
Length = 950
Score = 29.9 bits (64), Expect = 2.2
Identities = 16/54 (29%), Positives = 27/54 (50%)
Frame = +2
Query: 257 HLSPKQLRPPSKLILSSEYICSSSKHISSHLEHAFISDFDYNNSRSSDQERNVL 418
H P+ L PSK+ ++ + +S + + + I FD NNS S RN++
Sbjct: 233 HDQPQSLSSPSKI--QADDVSTSGEDVKEREDFEIIRVFDGNNSYRSQISRNIV 284
>AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical
protein Y63D3A.5 protein.
Length = 486
Score = 29.1 bits (62), Expect = 3.9
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Frame = +3
Query: 192 PPIQWKPQNTWNAPPKPIQPINTYPQNNY-APPQNSYY---PQNTYAPP 326
PP Q PQ + APP+ P PQ ++ APP ++ PQ+ PP
Sbjct: 321 PPPQGAPQQGFGAPPQG-PPQGGPPQGSFGAPPPQQFHAPSPQSFGGPP 368
>Z96047-4|CAB09414.1| 796|Caenorhabditis elegans Hypothetical
protein DY3.5 protein.
Length = 796
Score = 28.7 bits (61), Expect = 5.1
Identities = 16/50 (32%), Positives = 17/50 (34%)
Frame = +3
Query: 192 PPIQWKPQNTWNAPPKPIQPINTYPQNNYAPPQNSYYPQNTYAPPQNTYR 341
PP Q PQ N P P PI P P P Y TY+
Sbjct: 488 PPQQPAPQQPMNFLPAPQAPIIQAPAPQAPAPMQPQQPPKQYVTQPPTYK 537
>Z49127-2|CAA88949.1| 245|Caenorhabditis elegans Hypothetical
protein F13D12.3 protein.
Length = 245
Score = 28.7 bits (61), Expect = 5.1
Identities = 13/29 (44%), Positives = 21/29 (72%), Gaps = 4/29 (13%)
Frame = +3
Query: 264 PQNNYAPPQNSY-YPQNTYAP---PQNTY 338
PQ +Y+PP++SY P+ TY+P P ++Y
Sbjct: 87 PQPSYSPPKSSYGRPEPTYSPYSRPSSSY 115
>AF125971-9|AAD14764.1| 442|Caenorhabditis elegans Hypothetical
protein Y4C6B.1 protein.
Length = 442
Score = 28.3 bits (60), Expect = 6.8
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = +2
Query: 191 PAYPVETSKYVERSTQADPADKHLSPKQLRPPSKLILSSEYICSSSKHISSHLE 352
P +++ + T + PA+K SPK L PP++ I+S+ + H S L+
Sbjct: 331 PLSEIKSDNKLSTVTPSKPAEKKSSPKSL-PPAETIVSNRPYLTDIAHGRSMLK 383
>Z81054-12|CAB61006.1| 1781|Caenorhabditis elegans Hypothetical
protein C02F4.1 protein.
Length = 1781
Score = 27.9 bits (59), Expect = 8.9
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = +3
Query: 231 PPKPIQPINTYPQNNY 278
PP PI PIN P +NY
Sbjct: 1721 PPNPISPINRGPSSNY 1736
>Z81032-6|CAB60991.1| 1781|Caenorhabditis elegans Hypothetical protein
C02F4.1 protein.
Length = 1781
Score = 27.9 bits (59), Expect = 8.9
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = +3
Query: 231 PPKPIQPINTYPQNNY 278
PP PI PIN P +NY
Sbjct: 1721 PPNPISPINRGPSSNY 1736
>Z73105-4|CAA97443.2| 1406|Caenorhabditis elegans Hypothetical protein
T11G6.5 protein.
Length = 1406
Score = 27.9 bits (59), Expect = 8.9
Identities = 16/38 (42%), Positives = 19/38 (50%)
Frame = +3
Query: 228 APPKPIQPINTYPQNNYAPPQNSYYPQNTYAPPQNTYR 341
APP I +N P NNY+ P S+ P Y P N R
Sbjct: 1153 APPG-ISNLNR-PGNNYSGPSQSFRPNQQYNPNFNHQR 1188
>Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical protein
K08C7.3b protein.
Length = 3672
Score = 27.9 bits (59), Expect = 8.9
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = -3
Query: 600 SQSCRPSSGRCKLCHQ 553
S+SC P+SG C LC Q
Sbjct: 1948 SRSCHPNSGDCYLCEQ 1963
>Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical protein
K08C7.3a protein.
Length = 3704
Score = 27.9 bits (59), Expect = 8.9
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = -3
Query: 600 SQSCRPSSGRCKLCHQ 553
S+SC P+SG C LC Q
Sbjct: 1948 SRSCHPNSGDCYLCEQ 1963
>Z69384-10|CAA93420.2| 1406|Caenorhabditis elegans Hypothetical
protein T11G6.5 protein.
Length = 1406
Score = 27.9 bits (59), Expect = 8.9
Identities = 16/38 (42%), Positives = 19/38 (50%)
Frame = +3
Query: 228 APPKPIQPINTYPQNNYAPPQNSYYPQNTYAPPQNTYR 341
APP I +N P NNY+ P S+ P Y P N R
Sbjct: 1153 APPG-ISNLNR-PGNNYSGPSQSFRPNQQYNPNFNHQR 1188
>U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog
(hedgehog-like family)protein 7 protein.
Length = 401
Score = 27.9 bits (59), Expect = 8.9
Identities = 22/55 (40%), Positives = 27/55 (49%), Gaps = 6/55 (10%)
Frame = +3
Query: 192 PPIQWKPQNTWNAPPKPIQPINTYPQNNY---APPQNSYYPQNTY---APPQNTY 338
PP PQ+ A P P P+ +YPQN APP + YPQ+ APP Y
Sbjct: 67 PPPAPYPQH---AVPAPAPPLASYPQNAVPVPAPPP-APYPQHAVPAPAPPPAPY 117
>U39678-12|AAK39209.2| 1185|Caenorhabditis elegans Hypothetical
protein C39D10.7 protein.
Length = 1185
Score = 27.9 bits (59), Expect = 8.9
Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Frame = +3
Query: 240 PIQPINTYPQNN--YAPPQNSYYPQNTYAPPQN 332
P+ P P + Y+PP+ +Y P++T A P N
Sbjct: 285 PVDPTPYAPASAPVYSPPRTTYVPRSTSAAPPN 317
>AF038576-1|AAC38973.1| 1781|Caenorhabditis elegans CED-5 protein.
Length = 1781
Score = 27.9 bits (59), Expect = 8.9
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = +3
Query: 231 PPKPIQPINTYPQNNY 278
PP PI PIN P +NY
Sbjct: 1721 PPNPISPINRGPSSNY 1736
>AC084152-9|AAK39313.1| 296|Caenorhabditis elegans Hypothetical
protein Y102A11A.1 protein.
Length = 296
Score = 27.9 bits (59), Expect = 8.9
Identities = 15/35 (42%), Positives = 16/35 (45%)
Frame = +3
Query: 225 NAPPKPIQPINTYPQNNYAPPQNSYYPQNTYAPPQ 329
NAP P+QPI N PP PQ PPQ
Sbjct: 171 NAPVPPVQPIFNI---NSGPPAAQPAPQQIMIPPQ 202
>AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha
chain protein.
Length = 3704
Score = 27.9 bits (59), Expect = 8.9
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = -3
Query: 600 SQSCRPSSGRCKLCHQ 553
S+SC P+SG C LC Q
Sbjct: 1948 SRSCHPNSGDCYLCEQ 1963
>AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha
protein.
Length = 3704
Score = 27.9 bits (59), Expect = 8.9
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = -3
Query: 600 SQSCRPSSGRCKLCHQ 553
S+SC P+SG C LC Q
Sbjct: 1948 SRSCHPNSGDCYLCEQ 1963
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,323,870
Number of Sequences: 27780
Number of extensions: 337581
Number of successful extensions: 1317
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 1158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1302
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1956310428
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -