Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0394
         (800 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    35   0.001
DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex det...    22   7.6  
DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex det...    22   7.6  
DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex det...    22   7.6  
DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex det...    22   7.6  
AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding prote...    22   7.6  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   7.6  

>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 34.7 bits (76), Expect = 0.001
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +3

Query: 510 EASLVKKGWYSYTGADGKVYTVHYWADKTGYHAYGDHL 623
           E  +V +G  SYT  DG+  ++ Y AD+ G+   G H+
Sbjct: 66  ETPVVSQGSDSYTAPDGQQVSITYVADENGFQVQGSHI 103


>DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 11/29 (37%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
 Frame = +3

Query: 234 PKPIQPI-NTYPQNNYAPPQNSYYPQNTY 317
           PK I  + N Y  +NY    N+ Y  N Y
Sbjct: 79  PKIISSLSNNYKYSNYNNYNNNNYNNNNY 107


>DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 11/29 (37%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
 Frame = +3

Query: 234 PKPIQPI-NTYPQNNYAPPQNSYYPQNTY 317
           PK I  + N Y  +NY    N+ Y  N Y
Sbjct: 79  PKIISSLSNNYKYSNYNNYNNNNYNNNNY 107


>DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 11/29 (37%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
 Frame = +3

Query: 234 PKPIQPI-NTYPQNNYAPPQNSYYPQNTY 317
           PK I  + N Y  +NY    N+ Y  N Y
Sbjct: 79  PKIISSLSNNYKYSNYNNYNNNNYNNNNY 107


>DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 11/29 (37%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
 Frame = +3

Query: 234 PKPIQPI-NTYPQNNYAPPQNSYYPQNTY 317
           PK I  + N Y  +NY    N+ Y  N Y
Sbjct: 79  PKIISSLSNNYKYSNYNNYNNNNYNNNNY 107


>AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding protein
           ASP5 protein.
          Length = 143

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +3

Query: 390 VPVIKNEMYYGDNGXYKYEY 449
           V V +NE Y GD+    Y+Y
Sbjct: 109 VAVCRNEEYTGDDCQKTYQY 128


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +3

Query: 192  PPIQWKPQNTWNAPP 236
            P + + P N WN PP
Sbjct: 1154 PHLPFTPFNFWNPPP 1168


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 205,256
Number of Sequences: 438
Number of extensions: 4860
Number of successful extensions: 16
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25367793
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)