Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0390
         (762 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26639| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.8  
SB_18991| Best HMM Match : RVT_1 (HMM E-Value=2.8e-34)                 30   2.4  
SB_51606| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.5  

>SB_26639| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 287

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = -3

Query: 361 KTLLRYCSFLPIRCLQALKQYSFIYRAYILINKTYY 254
           +T L Y +++ +R L +  Q +F Y  YI++ K +Y
Sbjct: 136 QTTLYYANYIILRKLHSTTQATFYYANYIILRKLHY 171


>SB_18991| Best HMM Match : RVT_1 (HMM E-Value=2.8e-34)
          Length = 899

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 15/55 (27%), Positives = 28/55 (50%)
 Frame = +2

Query: 260 SFIYKYICPIYEGILLQSLQATYRKEAAIAQ*CLETHSQTLALLNNVTYTIIYVL 424
           +F Y+    + E +LL  LQ+ YRK  +     L+  +  L  +N+   T++ +L
Sbjct: 311 AFFYQLYAHVTENVLLPELQSAYRKSYSTETALLKIANDILINMNSQHVTLLVLL 365


>SB_51606| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 131

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = -1

Query: 411 IVYVTLFRR-ANVCECVSRHYCAIAASFRY 325
           +VY+T FR  A + E  S +YCAIA   RY
Sbjct: 51  LVYLTCFRTLARLLEKRSPYYCAIAPLSRY 80


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,906,484
Number of Sequences: 59808
Number of extensions: 370573
Number of successful extensions: 717
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 648
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 712
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2082369341
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)