Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0390
         (762 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY119654-1|AAM50308.1|  574|Drosophila melanogaster RE74287p pro...    31   1.7  
AE013599-653|AAF59087.2|  574|Drosophila melanogaster CG8695-PA ...    31   1.7  
BT029928-1|ABM92802.1|  347|Drosophila melanogaster IP09469p pro...    30   4.0  
BT022852-1|AAY55268.1|  347|Drosophila melanogaster IP13061p pro...    30   4.0  
AE014296-3082|AAF49210.1|  627|Drosophila melanogaster CG14076-P...    30   4.0  

>AY119654-1|AAM50308.1|  574|Drosophila melanogaster RE74287p
           protein.
          Length = 574

 Score = 31.1 bits (67), Expect = 1.7
 Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 3/78 (3%)
 Frame = +2

Query: 269 YKYICPIYEGILLQSLQATYRKEAAIAQ*CLETHSQTLALLNNVTYTIIYVLFMYY---T 439
           Y Y+  IY     ++L+  Y     I +   E       LL    Y+ + VL  YY   T
Sbjct: 251 YTYLQHIYTTDQPETLELVYAFRDVIEEIDAELGGDDRVLLTEA-YSPLEVLMQYYGNGT 309

Query: 440 HYNSMNKLNFKLIAKCAF 493
           H  S    NF+L+AK ++
Sbjct: 310 HLGSQIPFNFELLAKISY 327


>AE013599-653|AAF59087.2|  574|Drosophila melanogaster CG8695-PA
           protein.
          Length = 574

 Score = 31.1 bits (67), Expect = 1.7
 Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 3/78 (3%)
 Frame = +2

Query: 269 YKYICPIYEGILLQSLQATYRKEAAIAQ*CLETHSQTLALLNNVTYTIIYVLFMYY---T 439
           Y Y+  IY     ++L+  Y     I +   E       LL    Y+ + VL  YY   T
Sbjct: 251 YTYLQHIYTTDQPETLELVYAFRDVIEEIDAELGGDDRVLLTEA-YSPLEVLMQYYGNGT 309

Query: 440 HYNSMNKLNFKLIAKCAF 493
           H  S    NF+L+AK ++
Sbjct: 310 HLGSQIPFNFELLAKISY 327


>BT029928-1|ABM92802.1|  347|Drosophila melanogaster IP09469p
           protein.
          Length = 347

 Score = 29.9 bits (64), Expect = 4.0
 Identities = 14/38 (36%), Positives = 23/38 (60%)
 Frame = -2

Query: 419 RILLYM*HYLGELMFASVSQDIIALLQLPSDTLPASSE 306
           RI+++        +F S S +I+ALLQ PSD + + S+
Sbjct: 117 RIIVFTTFVAALFLFTSFSANIVALLQSPSDAIQSLSD 154


>BT022852-1|AAY55268.1|  347|Drosophila melanogaster IP13061p
           protein.
          Length = 347

 Score = 29.9 bits (64), Expect = 4.0
 Identities = 14/38 (36%), Positives = 23/38 (60%)
 Frame = -2

Query: 419 RILLYM*HYLGELMFASVSQDIIALLQLPSDTLPASSE 306
           RI+++        +F S S +I+ALLQ PSD + + S+
Sbjct: 117 RIIVFTTFVAALFLFTSFSANIVALLQSPSDAIQSLSD 154


>AE014296-3082|AAF49210.1|  627|Drosophila melanogaster CG14076-PA
           protein.
          Length = 627

 Score = 29.9 bits (64), Expect = 4.0
 Identities = 14/38 (36%), Positives = 23/38 (60%)
 Frame = -2

Query: 419 RILLYM*HYLGELMFASVSQDIIALLQLPSDTLPASSE 306
           RI+++        +F S S +I+ALLQ PSD + + S+
Sbjct: 397 RIIVFTTFVAALFLFTSFSANIVALLQSPSDAIQSLSD 434


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,363,193
Number of Sequences: 53049
Number of extensions: 516497
Number of successful extensions: 708
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 690
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 708
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3499501170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)