Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0390
         (762 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    24   1.8  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    21   9.4  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    21   9.4  

>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = +2

Query: 14  ILTVVND*YNCGGVVGLSELLSYV-SSTCKC 103
           +L + +D  +  GV+ L++L SYV S   KC
Sbjct: 404 LLVISDDNIHIKGVISLNKLTSYVISGIVKC 434



 Score = 22.6 bits (46), Expect = 4.1
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = -1

Query: 615 KCLFTMPNKILYERLAVYFSHKAK 544
           KC+  MP K+  E+++  ++  AK
Sbjct: 123 KCIIVMPEKMSDEKISTLYALGAK 146


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = -2

Query: 626 MKH*SVYSLCPIKFYMRDWLCTFPTRRR 543
           M+H  ++     K   R WL  FPTR +
Sbjct: 386 MQHCELHMQPRKKNCCRSWLSKFPTRSK 413


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = -2

Query: 626 MKH*SVYSLCPIKFYMRDWLCTFPTRRR 543
           M+H  ++     K   R WL  FPTR +
Sbjct: 386 MQHCELHMQPRKKNCCRSWLSKFPTRSK 413


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,855
Number of Sequences: 438
Number of extensions: 3952
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23789892
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)