Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0390
         (762 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g28190.1 68414.m03460 expressed protein                             28   5.9  
At5g14920.1 68418.m01750 gibberellin-regulated family protein si...    28   7.8  

>At1g28190.1 68414.m03460 expressed protein
          Length = 266

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -2

Query: 572 WLCTFPTRRRSSNNGFIILLNSDVIVQ 492
           WLC  P   R+SN G I L+ SD  +Q
Sbjct: 23  WLCLHPRPDRTSNGGRIKLVRSDGSLQ 49


>At5g14920.1 68418.m01750 gibberellin-regulated family protein
           similar to SP|P46689 Gibberellin-regulated protein 1
           precursor {Arabidopsis thaliana}; contains Pfam profile
           PF02704: Gibberellin regulated protein
          Length = 275

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = -2

Query: 398 HYLGELMFASVSQDIIALLQLPSDTLPASSEA 303
           H    ++FA+ +++  AL+ LP+ TLP+ S A
Sbjct: 13  HVFTNVVFAASNEESNALVSLPTPTLPSPSPA 44


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,785,753
Number of Sequences: 28952
Number of extensions: 250087
Number of successful extensions: 451
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 442
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 451
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1702303248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)