Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0389
         (507 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.       22   2.7  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    22   3.6  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    22   3.6  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    22   3.6  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    22   3.6  
U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic pr...    21   8.4  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   8.4  

>U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.
          Length = 470

 Score = 22.2 bits (45), Expect = 2.7
 Identities = 23/86 (26%), Positives = 31/86 (36%)
 Frame = +3

Query: 6   SNSQQPWLMLKSRSPPTPSCRVTTWXVNVALQEVLKTALIHGGLVHGLHEAAKALDKRQA 185
           S    P+ +L  R+PP P   VT+  + V  +  L    IH      L   A    K Q 
Sbjct: 337 STGFSPYEILYGRTPPNPLDAVTSGLLPV--RPPLTREEIHEKARENLKHHANLRQKNQK 394

Query: 186 VLCVLAENCDEAAYKKLVQALCNEHQ 263
               + E  D    K  V +    HQ
Sbjct: 395 GEVTVLEIEDWVLLKNKVTSDTRTHQ 420


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 3.6
 Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 4/57 (7%)
 Frame = -2

Query: 374 DNTGAADNFPCLAILVNLAETSPFSKLFVVV----NLDKWNLMFVAQSLNKFLVCSF 216
           + +G+  N  CL I V + +   +   FV+V     + K  L+F+   L    V  F
Sbjct: 52  EESGSMANQKCLEITVKILKIVAYLVTFVIVLGSGVISKGTLLFMTSQLKPDKVTVF 108


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 3.6
 Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 4/57 (7%)
 Frame = -2

Query: 374 DNTGAADNFPCLAILVNLAETSPFSKLFVVV----NLDKWNLMFVAQSLNKFLVCSF 216
           + +G+  N  CL I V + +   +   FV+V     + K  L+F+   L    V  F
Sbjct: 52  EESGSMANQKCLEITVKILKIVAYLVTFVIVLGSGVISKGTLLFMTSQLKPDKVTVF 108


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 3.6
 Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 4/57 (7%)
 Frame = -2

Query: 374 DNTGAADNFPCLAILVNLAETSPFSKLFVVV----NLDKWNLMFVAQSLNKFLVCSF 216
           + +G+  N  CL I V + +   +   FV+V     + K  L+F+   L    V  F
Sbjct: 52  EESGSMANQKCLEITVKILKIVAYLVTFVIVLGSGVISKGTLLFMTSQLKPDKVTVF 108


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 3.6
 Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 4/57 (7%)
 Frame = -2

Query: 374 DNTGAADNFPCLAILVNLAETSPFSKLFVVV----NLDKWNLMFVAQSLNKFLVCSF 216
           + +G+  N  CL I V + +   +   FV+V     + K  L+F+   L    V  F
Sbjct: 52  EESGSMANQKCLEITVKILKIVAYLVTFVIVLGSGVISKGTLLFMTSQLKPDKVTVF 108


>U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic
           protein protein.
          Length = 372

 Score = 20.6 bits (41), Expect = 8.4
 Identities = 6/9 (66%), Positives = 7/9 (77%)
 Frame = -2

Query: 80  PCCYPTRWG 54
           PCC PT+ G
Sbjct: 335 PCCVPTQLG 343


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 20.6 bits (41), Expect = 8.4
 Identities = 5/9 (55%), Positives = 6/9 (66%)
 Frame = -2

Query: 74   CYPTRWGWW 48
            CY T W W+
Sbjct: 1402 CYFTNWAWY 1410



 Score = 20.6 bits (41), Expect = 8.4
 Identities = 5/9 (55%), Positives = 6/9 (66%)
 Frame = -2

Query: 74   CYPTRWGWW 48
            CY T W W+
Sbjct: 1827 CYFTNWAWY 1835



 Score = 20.6 bits (41), Expect = 8.4
 Identities = 5/9 (55%), Positives = 6/9 (66%)
 Frame = -2

Query: 74   CYPTRWGWW 48
            CY T W W+
Sbjct: 2325 CYFTNWAWY 2333


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 109,664
Number of Sequences: 336
Number of extensions: 2171
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12049355
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)