Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0389
(507 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC962.04 |rps1201|rps12-1, rps12|40S ribosomal protein S12|Sch... 151 6e-38
SPBC1685.02c |rps1202|rps12-2|40S ribosomal protein S12|Schizosa... 150 1e-37
SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyce... 32 0.057
SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyce... 31 0.099
SPBC106.13 |||conserved eukaryotic protein|Schizosaccharomyces p... 27 1.6
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 26 3.7
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 26 3.7
SPAC977.12 |||L-asparaginase |Schizosaccharomyces pombe|chr 1|||... 25 4.9
SPBPB8B6.05c |||L-asparaginase |Schizosaccharomyces pombe|chr 2|... 25 4.9
SPAPJ696.01c |vps17||retromer complex subunit Vps17|Schizosaccha... 25 6.5
SPBC2G2.08 |ade9||C-1-tetrahydrofolatesynthase/methylenetetrahyd... 25 8.6
>SPCC962.04 |rps1201|rps12-1, rps12|40S ribosomal protein
S12|Schizosaccharomyces pombe|chr 3|||Manual
Length = 145
Score = 151 bits (366), Expect = 6e-38
Identities = 68/110 (61%), Positives = 86/110 (78%)
Frame = +3
Query: 75 TWXVNVALQEVLKTALIHGGLVHGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCN 254
T V AL+EVLK AL+H GL G+ EA+KALD+RQA LCVL E+CD+ AY KLV+ALC
Sbjct: 26 TVSVEDALKEVLKRALVHDGLARGIREASKALDRRQAHLCVLCESCDQEAYVKLVEALCA 85
Query: 255 EHQIPLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVVIKDFGEETPA 404
E + PL+KV + K LGEWAGLC +D+DG ARK+VGCSCV + D+GE++ A
Sbjct: 86 ESETPLIKVADPKVLGEWAGLCVLDRDGNARKVVGCSCVAVTDYGEDSAA 135
>SPBC1685.02c |rps1202|rps12-2|40S ribosomal protein
S12|Schizosaccharomyces pombe|chr 2|||Manual
Length = 148
Score = 150 bits (364), Expect = 1e-37
Identities = 68/107 (63%), Positives = 85/107 (79%)
Frame = +3
Query: 84 VNVALQEVLKTALIHGGLVHGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCNEHQ 263
V +L+EVLK AL+H GL G+ EA+KALD+RQA LCVL E+CD+ AY KLV+ALC E Q
Sbjct: 32 VEDSLKEVLKRALVHDGLARGIREASKALDRRQAHLCVLCESCDQEAYVKLVEALCAESQ 91
Query: 264 IPLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVVIKDFGEETPA 404
PLVKV + K LGEWAGLC +D+DG ARK+VGCSCV + D+GE++ A
Sbjct: 92 TPLVKVADPKILGEWAGLCVLDRDGNARKVVGCSCVAVTDYGEDSVA 138
>SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 154
Score = 31.9 bits (69), Expect = 0.057
Identities = 17/74 (22%), Positives = 35/74 (47%)
Frame = +3
Query: 84 VNVALQEVLKTALIHGGLVHGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCNEHQ 263
+N + + +K A ++ G+ E KA+ K + L +LA + + LC ++
Sbjct: 37 LNKKMMKTVKKASKQKHILRGVKEVVKAVRKGEKGLVILAGDISPMDVISHIPVLCEDNN 96
Query: 264 IPLVKVDNNKKLGE 305
+P + + + LGE
Sbjct: 97 VPYLYTVSKELLGE 110
>SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 259
Score = 31.1 bits (67), Expect = 0.099
Identities = 14/54 (25%), Positives = 27/54 (50%)
Frame = +3
Query: 141 HGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCNEHQIPLVKVDNNKKLG 302
+GL+ ++ ++A L ++A + D + ALC + +P V N +LG
Sbjct: 134 YGLNHVVALIEAKKAKLVLIASDVDPIELVVFLPALCKKMGVPYAIVKNKARLG 187
>SPBC106.13 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 404
Score = 27.1 bits (57), Expect = 1.6
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = -2
Query: 404 RWSFLAEIFDDNTGAADNFPCLAIL 330
RW +LA +F N A N P + +L
Sbjct: 257 RWEYLASLFTSNFTAVHNIPSVPLL 281
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 25.8 bits (54), Expect = 3.7
Identities = 16/63 (25%), Positives = 27/63 (42%)
Frame = -1
Query: 228 CMQLHHSSQPKHIVLLASCQEL*RLREDRAQDHRGLKLSLAPLAMLHSRXMLLPDKMGLV 49
C+ S +HIV A L +D +DH G+ L ++P + + + P M +
Sbjct: 517 CVLCTTSESGEHIVAGAGELHLEICLKDLQEDHAGIPLKISPPVVSYRESVSEPSSMTAL 576
Query: 48 GTS 40
S
Sbjct: 577 SKS 579
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 25.8 bits (54), Expect = 3.7
Identities = 16/63 (25%), Positives = 27/63 (42%)
Frame = -1
Query: 228 CMQLHHSSQPKHIVLLASCQEL*RLREDRAQDHRGLKLSLAPLAMLHSRXMLLPDKMGLV 49
C+ S +HIV A L +D +DH G+ L ++P + + + P M +
Sbjct: 517 CVLCTTSESGEHIVAGAGELHLEICLKDLQEDHAGIPLKISPPVVSYRESVSEPSSMTAL 576
Query: 48 GTS 40
S
Sbjct: 577 SKS 579
>SPAC977.12 |||L-asparaginase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 356
Score = 25.4 bits (53), Expect = 4.9
Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
Frame = +3
Query: 45 SPPTPSCRVTTWXVNVALQEVLKTALIHG--GLVHGLHEAAKALDKRQAVLCVLAENCDE 218
SP P+ +V N+ +++ + +++G GL L E+A L + VL +
Sbjct: 229 SPAVPTGKVFFDIYNI--KQLPRVDILYGYQGLNPKLAESAVHLGAKGLVLAAMGATSWT 286
Query: 219 AAYKKLVQALCNEHQIPLV 275
+++ +L EH IP+V
Sbjct: 287 DDGNEVISSLIREHNIPVV 305
>SPBPB8B6.05c |||L-asparaginase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 356
Score = 25.4 bits (53), Expect = 4.9
Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
Frame = +3
Query: 45 SPPTPSCRVTTWXVNVALQEVLKTALIHG--GLVHGLHEAAKALDKRQAVLCVLAENCDE 218
SP P+ +V N+ +++ + +++G GL L E+A L + VL +
Sbjct: 229 SPAVPTGKVFFDIYNI--KQLPRVDILYGYQGLNPKLAESAVHLGAKGLVLAAMGATSWT 286
Query: 219 AAYKKLVQALCNEHQIPLV 275
+++ +L EH IP+V
Sbjct: 287 DDGNEVISSLIREHNIPVV 305
>SPAPJ696.01c |vps17||retromer complex subunit
Vps17|Schizosaccharomyces pombe|chr 1|||Manual
Length = 549
Score = 25.0 bits (52), Expect = 6.5
Identities = 10/28 (35%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
Frame = -1
Query: 372 QHRSSRQFSLPCHPCQSCRD-QPILQAF 292
+ ++ +QF LP PCQ+ + +PI+++F
Sbjct: 226 KRKALKQFPLPPDPCQALANLRPIVKSF 253
>SPBC2G2.08 |ade9||C-1-
tetrahydrofolatesynthase/methylenetetrahydrofolatedehydr
ogenase/methylenetetrahydrofolatecyclohydrolase/formylte
trahydrofolatesynthetase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 969
Score = 24.6 bits (51), Expect = 8.6
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +1
Query: 346 GKLSAAPVLSSKISARKLQR 405
G S+A +L+ K+ ARKLQR
Sbjct: 28 GTSSSANILNGKLLARKLQR 47
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,899,283
Number of Sequences: 5004
Number of extensions: 35126
Number of successful extensions: 109
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 202220600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -