Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0389
(507 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0875 - 7265529-7265588,7265681-7265746,7266008-7266293,726... 148 3e-36
07_01_0360 + 2646279-2646283,2647113-2647398,2648043-2648108,264... 146 9e-36
06_01_1127 + 9294079-9294193,9294300-9294369,9294611-9294716,929... 33 0.13
08_02_0101 + 12374476-12376683 31 0.53
02_05_0610 - 30342105-30342266,30343024-30343129,30343788-303438... 31 0.53
09_04_0677 - 19388888-19389019,19389124-19389216,19389317-193894... 29 1.6
02_05_0441 + 29040250-29040524,29040656-29040772,29040834-290411... 29 1.6
05_04_0167 + 18668004-18668287,18668961-18669043,18669346-186694... 29 2.1
01_07_0018 - 40488702-40488833,40488928-40489020,40489125-404892... 29 2.1
06_03_0493 + 21402536-21404599 29 2.8
12_01_1092 - 11362094-11362367,11362739-11362795,11363256-113636... 28 3.7
12_01_0222 - 1675077-1675289,1675476-1675553,1675943-1676002,167... 28 5.0
11_01_0221 - 1720952-1721164,1721351-1721428,1721836-1721895,172... 28 5.0
04_04_0965 - 29762388-29762564,29764272-29766361,29766567-297671... 27 6.5
11_06_0013 - 19252779-19252805,19252947-19253090,19253572-192536... 27 8.7
03_05_1052 - 29981142-29981546,29981637-29981707,29981887-299820... 27 8.7
>07_01_0875 -
7265529-7265588,7265681-7265746,7266008-7266293,
7267138-7267142
Length = 138
Score = 148 bits (358), Expect = 3e-36
Identities = 71/118 (60%), Positives = 86/118 (72%)
Frame = +3
Query: 45 SPPTPSCRVTTWXVNVALQEVLKTALIHGGLVHGLHEAAKALDKRQAVLCVLAENCDEAA 224
+PP P + ALQ V+K + H GLV GL EAAKA++K A LCVLAE+CD+
Sbjct: 9 APPAPVLG-EPMDLMTALQLVMKKSSAHDGLVKGLREAAKAIEKHAAQLCVLAEDCDQPD 67
Query: 225 YKKLVQALCNEHQIPLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVVIKDFGEET 398
Y KLV+ALC EH + LV V + K LGEWAGLCKID +GKARK+VGCSCVV+KDFGEE+
Sbjct: 68 YVKLVKALCAEHNVHLVTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEES 125
>07_01_0360 +
2646279-2646283,2647113-2647398,2648043-2648108,
2648199-2648258
Length = 138
Score = 146 bits (354), Expect = 9e-36
Identities = 67/102 (65%), Positives = 81/102 (79%)
Frame = +3
Query: 93 ALQEVLKTALIHGGLVHGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCNEHQIPL 272
ALQ V+K + H GLV GL EAAKA++K A LCVLAE+CD+ Y KLV+ALC EH + L
Sbjct: 24 ALQLVMKKSSAHDGLVKGLREAAKAIEKHAAQLCVLAEDCDQPDYVKLVKALCAEHNVHL 83
Query: 273 VKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVVIKDFGEET 398
V V + K LGEWAGLCKID +GKARK+VGCSCVV+KD+GEE+
Sbjct: 84 VTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDYGEES 125
>06_01_1127 +
9294079-9294193,9294300-9294369,9294611-9294716,
9295665-9295805,9296377-9296475
Length = 176
Score = 33.1 bits (72), Expect = 0.13
Identities = 21/63 (33%), Positives = 29/63 (46%)
Frame = +3
Query: 135 LVHGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCNEHQIPLVKVDNNKKLGEWAG 314
L G+ E K++ + Q LC++A N V LC E IP V V + + L AG
Sbjct: 45 LKRGVKEVVKSIRRGQKGLCIIAGNISPIDVITHVPILCEEANIPYVYVPSKEDLAT-AG 103
Query: 315 LCK 323
K
Sbjct: 104 TTK 106
>08_02_0101 + 12374476-12376683
Length = 735
Score = 31.1 bits (67), Expect = 0.53
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Frame = +3
Query: 54 TPSCRVTTWXVNVALQEVLKTALIHGGLVHGLHEAAKALDKRQAVLCVLAENC--DEAAY 227
T +CRV V + L+ L+TA + L+HGL A + + + A++C D Y
Sbjct: 124 THACRV---FVLMPLRGCLRTAFTYTALLHGLLGAGMVREAMAVFVGMRADSCAPDTHVY 180
Query: 228 KKLVQALC 251
+V LC
Sbjct: 181 ATMVHGLC 188
>02_05_0610 -
30342105-30342266,30343024-30343129,30343788-30343857,
30343978-30344092
Length = 150
Score = 31.1 bits (67), Expect = 0.53
Identities = 20/63 (31%), Positives = 28/63 (44%)
Frame = +3
Query: 135 LVHGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCNEHQIPLVKVDNNKKLGEWAG 314
L G+ E K++ + LCV+A N V LC E IP + V + + L AG
Sbjct: 45 LKRGVKEVVKSIRRGNKGLCVIAGNISPIDVITHVPILCEEANIPYIYVPSKEDLAT-AG 103
Query: 315 LCK 323
K
Sbjct: 104 TTK 106
>09_04_0677 -
19388888-19389019,19389124-19389216,19389317-19389445,
19389559-19389728,19390280-19390481,19390576-19390623,
19390797-19390799
Length = 258
Score = 29.5 bits (63), Expect = 1.6
Identities = 14/54 (25%), Positives = 27/54 (50%)
Frame = +3
Query: 141 HGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCNEHQIPLVKVDNNKKLG 302
+GL+ +++ +A L V+A + D + ALC + ++P V +LG
Sbjct: 130 YGLNHVTYLIEQSKAQLVVIAHDVDPIELVVWLPALCRKMEVPYCIVKGKARLG 183
>02_05_0441 +
29040250-29040524,29040656-29040772,29040834-29041143,
29041863-29042018,29042332-29042483,29042783-29042936,
29043897-29043998,29044168-29044209
Length = 435
Score = 29.5 bits (63), Expect = 1.6
Identities = 19/82 (23%), Positives = 37/82 (45%)
Frame = +1
Query: 187 YYVFWLRTVMKLHTRNLFRLCATNIRFHLSRLTTTKSLENGLVSARLTRMARQGKLSAAP 366
Y V W R KL + CA+ + S + ++++ + LV + +T A
Sbjct: 349 YLVTWARHREKLTIGVPYETCASELLESTSHVVKSRNMASKLVVSAITSFGYILSSLAQN 408
Query: 367 VLSSKISARKLQRWMCSXTTSS 432
V + + +A+K+Q C T++
Sbjct: 409 VDTERSAAKKIQAKFCDSETNN 430
>05_04_0167 +
18668004-18668287,18668961-18669043,18669346-18669434,
18670085-18670158,18670234-18670284,18671486-18671553,
18671666-18672234,18672333-18672383
Length = 422
Score = 29.1 bits (62), Expect = 2.1
Identities = 16/53 (30%), Positives = 30/53 (56%)
Frame = -1
Query: 270 VESDVRCTEPEQVSCMQLHHSSQPKHIVLLASCQEL*RLREDRAQDHRGLKLS 112
+ES ++ TEP + + LH +S+P +V L++C L + ++ + KLS
Sbjct: 268 IESSMQRTEPYKFPSLGLHSNSKPSSVV-LSACDILSQSDAFKSFSEKSTKLS 319
>01_07_0018 -
40488702-40488833,40488928-40489020,40489125-40489253,
40489379-40489500,40490292-40490544,40490636-40490638
Length = 243
Score = 29.1 bits (62), Expect = 2.1
Identities = 15/54 (27%), Positives = 26/54 (48%)
Frame = +3
Query: 141 HGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCNEHQIPLVKVDNNKKLG 302
+GL +++ +A L V+A + D + ALC + +IP V +LG
Sbjct: 115 YGLDHVTYLIEQSKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKARLG 168
>06_03_0493 + 21402536-21404599
Length = 687
Score = 28.7 bits (61), Expect = 2.8
Identities = 20/63 (31%), Positives = 28/63 (44%)
Frame = +3
Query: 90 VALQEVLKTALIHGGLVHGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCNEHQIP 269
V E+L T LIHG ++ E A L + D + Y L+Q LCN H++
Sbjct: 394 VRANELLYTTLIHGHFMNKNSEKALGLLSEMKNKGL---ELDISLYGALIQGLCNVHKLD 450
Query: 270 LVK 278
K
Sbjct: 451 EAK 453
>12_01_1092 -
11362094-11362367,11362739-11362795,11363256-11363683,
11364350-11365462
Length = 623
Score = 28.3 bits (60), Expect = 3.7
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +3
Query: 201 AENCDEAAYKKLVQALCNEHQIPLVKVDNNKKLG 302
A CDE +K + +CN + L + D+N +G
Sbjct: 316 AFKCDEYTVRKCSKVICNRSKNSLYRFDSNASIG 349
>12_01_0222 - 1675077-1675289,1675476-1675553,1675943-1676002,
1676103-1676206,1676321-1676479,1676768-1676894,
1677569-1677736,1677890-1678000,1678090-1678243,
1678409-1678744,1678854-1679038,1679141-1679239,
1679376-1679639,1679776-1679952,1680351-1680644,
1680753-1680920,1681574-1681918,1682002-1682171,
1682272-1682422,1683296-1683365,1683456-1683640,
1683999-1684092,1684195-1684313,1684658-1684717,
1684844-1684930,1685631-1685717,1685905-1686013,
1686105-1686183,1686350-1686437,1686611-1686675,
1687570-1687722,1688514-1688620,1688702-1688784,
1688926-1689016,1689095-1689231,1689612-1689701,
1689795-1689962,1690366-1690560
Length = 1809
Score = 27.9 bits (59), Expect = 5.0
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = +3
Query: 267 PLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVVIKDFGEET 398
PLV K GE A LC+ +K +A+ + ++KDF + T
Sbjct: 1759 PLVDRKGPKFSGELAELCESEKSEQAKAFLKQCMDILKDFEDPT 1802
>11_01_0221 - 1720952-1721164,1721351-1721428,1721836-1721895,
1721996-1722099,1722214-1722372,1722668-1722794,
1723469-1723636,1723789-1723899,1723989-1724142,
1724308-1724643,1724753-1724937,1725040-1725138,
1725275-1725538,1725674-1725850,1726249-1726542,
1726649-1726816,1727473-1727817,1727901-1728070,
1728171-1728321,1729193-1729262,1729353-1729537,
1729896-1729989,1730094-1730212,1730558-1730617,
1730744-1730830,1732348-1732434,1732622-1732730,
1732822-1732900,1733067-1733154,1733328-1733392,
1734287-1734439,1735231-1735337,1735419-1735501,
1735643-1735733,1735812-1735948,1736118-1736207,
1736301-1736468,1736875-1737057
Length = 1805
Score = 27.9 bits (59), Expect = 5.0
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = +3
Query: 267 PLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVVIKDFGEET 398
PLV K GE A LC+ +K +A+ + ++KDF + T
Sbjct: 1755 PLVDRKGPKFSGELAELCESEKSEQAKAFLKQCMDILKDFEDAT 1798
>04_04_0965 - 29762388-29762564,29764272-29766361,29766567-29767170,
29768395-29768637,29768704-29770203
Length = 1537
Score = 27.5 bits (58), Expect = 6.5
Identities = 13/18 (72%), Positives = 14/18 (77%), Gaps = 1/18 (5%)
Frame = -1
Query: 363 SSRQFS-LPCHPCQSCRD 313
SSR+FS LPC PC S RD
Sbjct: 1207 SSREFSVLPCQPCCSERD 1224
>11_06_0013 -
19252779-19252805,19252947-19253090,19253572-19253663,
19253757-19253835,19253965-19254031,19254163-19254254,
19254986-19255102,19255254-19255365,19255479-19255594,
19255680-19255756,19255912-19255993,19256077-19256214,
19258806-19259009
Length = 448
Score = 27.1 bits (57), Expect = 8.7
Identities = 19/61 (31%), Positives = 30/61 (49%)
Frame = +3
Query: 120 LIHGGLVHGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCNEHQIPLVKVDNNKKL 299
++ GG HG+HE +D R+ L + + A LV ALC +I L +V + +
Sbjct: 139 ILQGGFFHGIHELTYGVDIRKIRLMGVLQ---RIAIAYLVVALC---EIWLRRVSSGGNI 192
Query: 300 G 302
G
Sbjct: 193 G 193
>03_05_1052 -
29981142-29981546,29981637-29981707,29981887-29982022,
29982263-29982727,29982872-29983179,29983601-29983976
Length = 586
Score = 27.1 bits (57), Expect = 8.7
Identities = 12/43 (27%), Positives = 21/43 (48%)
Frame = +3
Query: 42 RSPPTPSCRVTTWXVNVALQEVLKTALIHGGLVHGLHEAAKAL 170
RS P P +W N +++ L + + LV G ++A A+
Sbjct: 125 RSGPLPKHNGVSWRGNSCMKDGLSDSTVRKSLVGGFYDAGDAI 167
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,923,441
Number of Sequences: 37544
Number of extensions: 251376
Number of successful extensions: 834
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 823
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 834
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1083123860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -