Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0389
(507 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_39846| Best HMM Match : SIR2 (HMM E-Value=1.4013e-45) 172 2e-43
SB_19199| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.002
SB_3513| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.002
SB_55500| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=2.8e-24) 31 0.55
SB_16903| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.55
SB_33518| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.72
SB_39360| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.2
SB_22093| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.8
SB_7961| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.8
SB_33148| Best HMM Match : 7tm_1 (HMM E-Value=6.1e-09) 27 8.9
>SB_39846| Best HMM Match : SIR2 (HMM E-Value=1.4013e-45)
Length = 427
Score = 172 bits (418), Expect = 2e-43
Identities = 77/99 (77%), Positives = 89/99 (89%)
Frame = +3
Query: 84 VNVALQEVLKTALIHGGLVHGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCNEHQ 263
+N ALQEVLKTALIH GL GLHEAAK+LDKR+A LC+L+ NCDEA Y KLV+ALC EH
Sbjct: 21 INTALQEVLKTALIHDGLSRGLHEAAKSLDKREAHLCILSNNCDEAMYVKLVEALCAEHG 80
Query: 264 IPLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVVIK 380
IPL+KVD++KKLGEWAGLCKIDK+GKARK+VGCSCVV+K
Sbjct: 81 IPLLKVDDSKKLGEWAGLCKIDKEGKARKVVGCSCVVVK 119
>SB_19199| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 68
Score = 39.1 bits (87), Expect = 0.002
Identities = 22/52 (42%), Positives = 31/52 (59%), Gaps = 4/52 (7%)
Frame = +3
Query: 171 DKRQAVLCVLAEN--CDEA--AYKKLVQALCNEHQIPLVKVDNNKKLGEWAG 314
D LCVL EN D + +L++A C E+ IP+VKVD+++KL AG
Sbjct: 2 DPDDVTLCVLVENRHADPGIQVHCRLIEAFCWEYPIPVVKVDSSRKLKTIAG 53
>SB_3513| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 104
Score = 39.1 bits (87), Expect = 0.002
Identities = 22/52 (42%), Positives = 31/52 (59%), Gaps = 4/52 (7%)
Frame = +3
Query: 171 DKRQAVLCVLAEN--CDEA--AYKKLVQALCNEHQIPLVKVDNNKKLGEWAG 314
D LCVL EN D + +L++A C E+ IP+VKVD+++KL AG
Sbjct: 2 DPDDVTLCVLVENRHADPGIQVHCRLIEAFCWEYPIPVVKVDSSRKLKTIAG 53
>SB_55500| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=2.8e-24)
Length = 172
Score = 31.1 bits (67), Expect = 0.55
Identities = 14/55 (25%), Positives = 28/55 (50%)
Frame = +3
Query: 141 HGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCNEHQIPLVKVDNNKKLGE 305
+G++ ++ ++A L V+A + D + ALC + Q+P V +LG+
Sbjct: 47 YGINHITSLVENKKAQLVVIAHDVDPIEIVVWLPALCRKMQVPYCIVKGKARLGK 101
>SB_16903| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 263
Score = 31.1 bits (67), Expect = 0.55
Identities = 14/55 (25%), Positives = 28/55 (50%)
Frame = +3
Query: 141 HGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCNEHQIPLVKVDNNKKLGE 305
+G++ ++ ++A L V+A + D + ALC + Q+P V +LG+
Sbjct: 138 YGINHITSLVENKKAQLVVIAHDVDPIEIVVWLPALCRKMQVPYCIVKGKARLGK 192
>SB_33518| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 455
Score = 30.7 bits (66), Expect = 0.72
Identities = 16/48 (33%), Positives = 25/48 (52%)
Frame = -2
Query: 293 FVVVNLDKWNLMFVAQSLNKFLVCSFITVLSQNT*YCLPLVKSFSGFV 150
F VNL +W++ F A +L+++ +C F TV C V F F+
Sbjct: 256 FQAVNLSRWSMCFQAVNLSRWFMC-FQTVNLSRWFMCFQAVNLFRWFM 302
Score = 27.9 bits (59), Expect = 5.1
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = -2
Query: 311 SPFSKLFVVVNLDKWNLMFVAQSLNKFLVC 222
S +S F VNL +W + F A +L+++ +C
Sbjct: 178 SRWSMCFQTVNLSRWFMCFQAVNLSRWFMC 207
Score = 27.5 bits (58), Expect = 6.7
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = -2
Query: 293 FVVVNLDKWNLMFVAQSLNKFLVC 222
F VNL +W + F A +L+++L+C
Sbjct: 112 FQAVNLSRWFMCFQAVNLSRWLMC 135
Score = 27.5 bits (58), Expect = 6.7
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = -2
Query: 293 FVVVNLDKWNLMFVAQSLNKFLVC 222
F VNL +W + F A +L+++L+C
Sbjct: 196 FQAVNLSRWFMCFQAVNLSRWLMC 219
Score = 27.5 bits (58), Expect = 6.7
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = -2
Query: 293 FVVVNLDKWNLMFVAQSLNKFLVC 222
F VNL +W + F A +L+++L+C
Sbjct: 316 FQAVNLSRWFMCFQAVNLSRWLMC 339
>SB_39360| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 209
Score = 29.1 bits (62), Expect = 2.2
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -2
Query: 377 DDNTGAADNFPCLAILVNLAETSPFSKLF 291
DD +D +PC+ I+VN++ T +K F
Sbjct: 10 DDGLTCSDVYPCVEIMVNISSTGSETKKF 38
>SB_22093| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 742
Score = 28.3 bits (60), Expect = 3.8
Identities = 19/76 (25%), Positives = 32/76 (42%), Gaps = 4/76 (5%)
Frame = +3
Query: 147 LHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCNEHQIPLVKVDNNKK----LGEWAG 314
LH+ LD A + +L N + Q L P+ DN + + ++ G
Sbjct: 363 LHQRGVNLDTTTANMTILTSNIIQQLNNVSFQGLTG----PVSFTDNQRNGIIAIKQFQG 418
Query: 315 LCKIDKDGKARKIVGC 362
+ +DK K R ++GC
Sbjct: 419 MAPLDKPAKIRLVIGC 434
>SB_7961| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1957
Score = 28.3 bits (60), Expect = 3.8
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Frame = +3
Query: 129 GGLVHGLHEAAK--ALDKRQAVLCVLAENCDEAAYKKLVQALCNEHQI 266
G L LHE +K +L R A+ C ++E + +++V N H I
Sbjct: 167 GSLHFVLHETSKEISLPDRVAIFCDVSEGLEFLKSRRIVHCFLNSHSI 214
>SB_33148| Best HMM Match : 7tm_1 (HMM E-Value=6.1e-09)
Length = 330
Score = 27.1 bits (57), Expect = 8.9
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = +3
Query: 99 QEVLKTALIHGGLVHGLHEAAKALDKRQAVLCVLAENCDEAAYKKLV 239
+ +L+ +G ++ L A + R LCV A CDE ++ LV
Sbjct: 70 KSLLQQPCPNGRVILSLAVADLCIGLRLEALCVFAARCDEMTWRVLV 116
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,946,003
Number of Sequences: 59808
Number of extensions: 304646
Number of successful extensions: 869
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 762
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 868
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1111677931
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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