Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0389
         (507 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X89659-1|CAA61806.1|  151|Drosophila melanogaster 40S ribosomal ...   182   2e-46
AY058531-1|AAL13760.1|  139|Drosophila melanogaster LD23808p pro...   182   2e-46
AE014296-2235|AAN11844.2|  139|Drosophila melanogaster CG11271-P...   182   2e-46
AE014296-2234|AAN11845.1|  139|Drosophila melanogaster CG11271-P...   182   2e-46
BT001803-1|AAN71558.1|  127|Drosophila melanogaster RH29995p pro...    49   3e-06
AF208396-1|AAF20209.1|  127|Drosophila melanogaster Hoi-polloi p...    36   0.024
AE014134-1677|AAF52798.2|  127|Drosophila melanogaster CG3949-PA...    36   0.024
AY113626-1|AAM29631.1|  163|Drosophila melanogaster RH70774p pro...    30   1.6  
AE013599-321|AAF59278.1|  163|Drosophila melanogaster CG11086-PA...    30   1.6  
X82782-1|CAA58023.1|  271|Drosophila melanogaster ribosomal prot...    29   2.7  
AY089570-1|AAL90308.1|  271|Drosophila melanogaster RE05022p pro...    29   2.7  
AE014298-903|AAF46169.1|  271|Drosophila melanogaster CG3314-PD,...    29   2.7  
AE014298-902|AAN09172.1|  271|Drosophila melanogaster CG3314-PC,...    29   2.7  
AE014298-901|AAN09170.1|  271|Drosophila melanogaster CG3314-PA,...    29   2.7  
AY268063-1|AAQ56699.1|  601|Drosophila melanogaster UDP-GalNAc:p...    28   6.3  
AY113411-1|AAM29416.1|  601|Drosophila melanogaster RE14585p pro...    28   6.3  
AY102665-1|AAM27494.1|  522|Drosophila melanogaster GH22474p pro...    28   6.3  
AF218236-1|AAG13184.1|  601|Drosophila melanogaster polypeptide ...    28   6.3  
AE014298-2736|AAF48856.1|  522|Drosophila melanogaster CG6335-PA...    28   6.3  
AE014298-2735|AAN09471.1|  563|Drosophila melanogaster CG6335-PB...    28   6.3  
AE013599-2069|AAF58130.1|  601|Drosophila melanogaster CG8182-PB...    28   6.3  
AE013599-2068|AAM70974.1|  601|Drosophila melanogaster CG8182-PA...    28   6.3  
BT010257-1|AAQ23575.1|  893|Drosophila melanogaster RE34565p pro...    28   8.3  
AE014134-2224|AAF53208.2|  893|Drosophila melanogaster CG12287-P...    28   8.3  

>X89659-1|CAA61806.1|  151|Drosophila melanogaster 40S ribosomal
           protein S12 protein.
          Length = 151

 Score =  182 bits (443), Expect = 2e-46
 Identities = 82/107 (76%), Positives = 95/107 (88%)
 Frame = +3

Query: 84  VNVALQEVLKTALIHGGLVHGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCNEHQ 263
           +N ALQEVLK +LI  GLVHG+H+A KALDKRQAVLC+LAE+ DE  YKKLV ALCNEHQ
Sbjct: 33  INTALQEVLKKSLIADGLVHGIHQACKALDKRQAVLCILAESFDEPNYKKLVTALCNEHQ 92

Query: 264 IPLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVVIKDFGEETPA 404
           IPL++VD++KKLGEW+GLCKIDK+GK RK+ GCS VVIKDFGEETPA
Sbjct: 93  IPLIRVDSHKKLGEWSGLCKIDKEGKPRKVCGCSVVVIKDFGEETPA 139


>AY058531-1|AAL13760.1|  139|Drosophila melanogaster LD23808p
           protein.
          Length = 139

 Score =  182 bits (443), Expect = 2e-46
 Identities = 82/107 (76%), Positives = 95/107 (88%)
 Frame = +3

Query: 84  VNVALQEVLKTALIHGGLVHGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCNEHQ 263
           +N ALQEVLK +LI  GLVHG+H+A KALDKRQAVLC+LAE+ DE  YKKLV ALCNEHQ
Sbjct: 21  INTALQEVLKKSLIADGLVHGIHQACKALDKRQAVLCILAESFDEPNYKKLVTALCNEHQ 80

Query: 264 IPLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVVIKDFGEETPA 404
           IPL++VD++KKLGEW+GLCKIDK+GK RK+ GCS VVIKDFGEETPA
Sbjct: 81  IPLIRVDSHKKLGEWSGLCKIDKEGKPRKVCGCSVVVIKDFGEETPA 127


>AE014296-2235|AAN11844.2|  139|Drosophila melanogaster CG11271-PC,
           isoform C protein.
          Length = 139

 Score =  182 bits (443), Expect = 2e-46
 Identities = 82/107 (76%), Positives = 95/107 (88%)
 Frame = +3

Query: 84  VNVALQEVLKTALIHGGLVHGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCNEHQ 263
           +N ALQEVLK +LI  GLVHG+H+A KALDKRQAVLC+LAE+ DE  YKKLV ALCNEHQ
Sbjct: 21  INTALQEVLKKSLIADGLVHGIHQACKALDKRQAVLCILAESFDEPNYKKLVTALCNEHQ 80

Query: 264 IPLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVVIKDFGEETPA 404
           IPL++VD++KKLGEW+GLCKIDK+GK RK+ GCS VVIKDFGEETPA
Sbjct: 81  IPLIRVDSHKKLGEWSGLCKIDKEGKPRKVCGCSVVVIKDFGEETPA 127


>AE014296-2234|AAN11845.1|  139|Drosophila melanogaster CG11271-PB,
           isoform B protein.
          Length = 139

 Score =  182 bits (443), Expect = 2e-46
 Identities = 82/107 (76%), Positives = 95/107 (88%)
 Frame = +3

Query: 84  VNVALQEVLKTALIHGGLVHGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCNEHQ 263
           +N ALQEVLK +LI  GLVHG+H+A KALDKRQAVLC+LAE+ DE  YKKLV ALCNEHQ
Sbjct: 21  INTALQEVLKKSLIADGLVHGIHQACKALDKRQAVLCILAESFDEPNYKKLVTALCNEHQ 80

Query: 264 IPLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVVIKDFGEETPA 404
           IPL++VD++KKLGEW+GLCKIDK+GK RK+ GCS VVIKDFGEETPA
Sbjct: 81  IPLIRVDSHKKLGEWSGLCKIDKEGKPRKVCGCSVVVIKDFGEETPA 127


>BT001803-1|AAN71558.1|  127|Drosophila melanogaster RH29995p
           protein.
          Length = 127

 Score = 49.2 bits (112), Expect = 3e-06
 Identities = 21/31 (67%), Positives = 26/31 (83%)
 Frame = +3

Query: 84  VNVALQEVLKTALIHGGLVHGLHEAAKALDK 176
           +N ALQEVLK +LI  GL+HG+H+A KALDK
Sbjct: 37  INTALQEVLKKSLIADGLIHGIHQACKALDK 67


>AF208396-1|AAF20209.1|  127|Drosophila melanogaster Hoi-polloi
           protein.
          Length = 127

 Score = 36.3 bits (80), Expect = 0.024
 Identities = 21/76 (27%), Positives = 38/76 (50%)
 Frame = +3

Query: 96  LQEVLKTALIHGGLVHGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCNEHQIPLV 275
           +  +L+ AL +  L  G +EA K L++  A + VLA + +       +  LC +  +P V
Sbjct: 21  IMNLLQQALNYNQLRKGANEATKTLNRGLADIVVLAGDAEPIEILLHLPLLCEDKNVPYV 80

Query: 276 KVDNNKKLGEWAGLCK 323
            V + + LG   G+ +
Sbjct: 81  FVRSKQALGRACGVSR 96


>AE014134-1677|AAF52798.2|  127|Drosophila melanogaster CG3949-PA
           protein.
          Length = 127

 Score = 36.3 bits (80), Expect = 0.024
 Identities = 21/76 (27%), Positives = 38/76 (50%)
 Frame = +3

Query: 96  LQEVLKTALIHGGLVHGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCNEHQIPLV 275
           +  +L+ AL +  L  G +EA K L++  A + VLA + +       +  LC +  +P V
Sbjct: 21  IMNLLQQALNYNQLRKGANEATKTLNRGLADIVVLAGDAEPIEILLHLPLLCEDKNVPYV 80

Query: 276 KVDNNKKLGEWAGLCK 323
            V + + LG   G+ +
Sbjct: 81  FVRSKQALGRACGVSR 96


>AY113626-1|AAM29631.1|  163|Drosophila melanogaster RH70774p
           protein.
          Length = 163

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 23/92 (25%), Positives = 46/92 (50%), Gaps = 6/92 (6%)
 Frame = +3

Query: 96  LQEVLKTALIHGGLVHGLHEAAKALDKRQ--AVLCVLAENCD-EAA---YKKLVQALCNE 257
           ++  L  A     ++ GL  A   L K    ++ C++A+  D ++A   ++ L++A C E
Sbjct: 35  IKSALLRAQSEARVIVGLSAAINVLSKSPEGSLFCLMAQPKDGDSATHMHEVLLEAFCYE 94

Query: 258 HQIPLVKVDNNKKLGEWAGLCKIDKDGKARKI 353
           + I ++KVD+  KL    G   ++     +K+
Sbjct: 95  NDIYVIKVDDATKLSRILGQDSVESCCLVQKV 126


>AE013599-321|AAF59278.1|  163|Drosophila melanogaster CG11086-PA
           protein.
          Length = 163

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 23/92 (25%), Positives = 46/92 (50%), Gaps = 6/92 (6%)
 Frame = +3

Query: 96  LQEVLKTALIHGGLVHGLHEAAKALDKRQ--AVLCVLAENCD-EAA---YKKLVQALCNE 257
           ++  L  A     ++ GL  A   L K    ++ C++A+  D ++A   ++ L++A C E
Sbjct: 35  IKSALLRAQSEARVIVGLSAAINVLSKSPEGSLFCLMAQPKDGDSATHMHEVLLEAFCYE 94

Query: 258 HQIPLVKVDNNKKLGEWAGLCKIDKDGKARKI 353
           + I ++KVD+  KL    G   ++     +K+
Sbjct: 95  NDIYVIKVDDATKLSRILGQDSVESCCLVQKV 126


>X82782-1|CAA58023.1|  271|Drosophila melanogaster ribosomal protein
           L7a protein.
          Length = 271

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 14/53 (26%), Positives = 26/53 (49%)
 Frame = +3

Query: 144 GLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCNEHQIPLVKVDNNKKLG 302
           G +   K +++++A L V+A + D       + ALC +  +P   V    +LG
Sbjct: 144 GTNTVTKLIEQKKAQLVVIAHDVDPLELVLFLPALCRKMGVPYCIVKGKARLG 196


>AY089570-1|AAL90308.1|  271|Drosophila melanogaster RE05022p
           protein.
          Length = 271

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 14/53 (26%), Positives = 26/53 (49%)
 Frame = +3

Query: 144 GLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCNEHQIPLVKVDNNKKLG 302
           G +   K +++++A L V+A + D       + ALC +  +P   V    +LG
Sbjct: 144 GTNTVTKLIEQKKAQLVVIAHDVDPLELVLFLPALCRKMGVPYCIVKGKARLG 196


>AE014298-903|AAF46169.1|  271|Drosophila melanogaster CG3314-PD,
           isoform D protein.
          Length = 271

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 14/53 (26%), Positives = 26/53 (49%)
 Frame = +3

Query: 144 GLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCNEHQIPLVKVDNNKKLG 302
           G +   K +++++A L V+A + D       + ALC +  +P   V    +LG
Sbjct: 144 GTNTVTKLIEQKKAQLVVIAHDVDPLELVLFLPALCRKMGVPYCIVKGKARLG 196


>AE014298-902|AAN09172.1|  271|Drosophila melanogaster CG3314-PC,
           isoform C protein.
          Length = 271

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 14/53 (26%), Positives = 26/53 (49%)
 Frame = +3

Query: 144 GLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCNEHQIPLVKVDNNKKLG 302
           G +   K +++++A L V+A + D       + ALC +  +P   V    +LG
Sbjct: 144 GTNTVTKLIEQKKAQLVVIAHDVDPLELVLFLPALCRKMGVPYCIVKGKARLG 196


>AE014298-901|AAN09170.1|  271|Drosophila melanogaster CG3314-PA,
           isoform A protein.
          Length = 271

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 14/53 (26%), Positives = 26/53 (49%)
 Frame = +3

Query: 144 GLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCNEHQIPLVKVDNNKKLG 302
           G +   K +++++A L V+A + D       + ALC +  +P   V    +LG
Sbjct: 144 GTNTVTKLIEQKKAQLVVIAHDVDPLELVLFLPALCRKMGVPYCIVKGKARLG 196


>AY268063-1|AAQ56699.1|  601|Drosophila melanogaster
           UDP-GalNAc:polypeptide N-acetylgalactosaminyltransferase
           protein.
          Length = 601

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 14/58 (24%), Positives = 25/58 (43%)
 Frame = -1

Query: 237 QVSCMQLHHSSQPKHIVLLASCQEL*RLREDRAQDHRGLKLSLAPLAMLHSRXMLLPD 64
           ++SC  + HS  P + V++  C E     E    +H+ +  S   + + H     L D
Sbjct: 525 ELSCATVQHSESPPYRVVMVPCMENDEFNEQWRYEHQHIIHSNTGMCLDHQGLKSLDD 582


>AY113411-1|AAM29416.1|  601|Drosophila melanogaster RE14585p
           protein.
          Length = 601

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 14/58 (24%), Positives = 25/58 (43%)
 Frame = -1

Query: 237 QVSCMQLHHSSQPKHIVLLASCQEL*RLREDRAQDHRGLKLSLAPLAMLHSRXMLLPD 64
           ++SC  + HS  P + V++  C E     E    +H+ +  S   + + H     L D
Sbjct: 525 ELSCATVQHSESPPYRVVMVPCMENDEFNEQWRYEHQHIIHSNTGMCLDHQGLKSLDD 582


>AY102665-1|AAM27494.1|  522|Drosophila melanogaster GH22474p
           protein.
          Length = 522

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 24/62 (38%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
 Frame = +3

Query: 144 GLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQAL-CNEHQIPLVKVDNNKKLGEWAGLC 320
           GLHE    +        V AE+  +   K LVQ   C EHQIPLV V  + +L +  GL 
Sbjct: 435 GLHEQRLKVLNLLWDAGVKAEHSYKLNPKLLVQLQHCEEHQIPLVVVLGDAELAQ--GLV 492

Query: 321 KI 326
           K+
Sbjct: 493 KL 494


>AF218236-1|AAG13184.1|  601|Drosophila melanogaster polypeptide
           N-acetylgalactosaminyltransferase protein.
          Length = 601

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 14/58 (24%), Positives = 25/58 (43%)
 Frame = -1

Query: 237 QVSCMQLHHSSQPKHIVLLASCQEL*RLREDRAQDHRGLKLSLAPLAMLHSRXMLLPD 64
           ++SC  + HS  P + V++  C E     E    +H+ +  S   + + H     L D
Sbjct: 525 ELSCATVQHSESPPYRVVMVPCMENDEFNEQWRYEHQHIIHSNTGMCLDHQGLKSLDD 582


>AE014298-2736|AAF48856.1|  522|Drosophila melanogaster CG6335-PA,
           isoform A protein.
          Length = 522

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 24/62 (38%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
 Frame = +3

Query: 144 GLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQAL-CNEHQIPLVKVDNNKKLGEWAGLC 320
           GLHE    +        V AE+  +   K LVQ   C EHQIPLV V  + +L +  GL 
Sbjct: 435 GLHEQRLKVLNLLWDAGVKAEHSYKLNPKLLVQLQHCEEHQIPLVVVLGDAELAQ--GLV 492

Query: 321 KI 326
           K+
Sbjct: 493 KL 494


>AE014298-2735|AAN09471.1|  563|Drosophila melanogaster CG6335-PB,
           isoform B protein.
          Length = 563

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 24/62 (38%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
 Frame = +3

Query: 144 GLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQAL-CNEHQIPLVKVDNNKKLGEWAGLC 320
           GLHE    +        V AE+  +   K LVQ   C EHQIPLV V  + +L +  GL 
Sbjct: 476 GLHEQRLKVLNLLWDAGVKAEHSYKLNPKLLVQLQHCEEHQIPLVVVLGDAELAQ--GLV 533

Query: 321 KI 326
           K+
Sbjct: 534 KL 535


>AE013599-2069|AAF58130.1|  601|Drosophila melanogaster CG8182-PB,
           isoform B protein.
          Length = 601

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 14/58 (24%), Positives = 25/58 (43%)
 Frame = -1

Query: 237 QVSCMQLHHSSQPKHIVLLASCQEL*RLREDRAQDHRGLKLSLAPLAMLHSRXMLLPD 64
           ++SC  + HS  P + V++  C E     E    +H+ +  S   + + H     L D
Sbjct: 525 ELSCATVQHSESPPYRVVMVPCMENDEFNEQWRYEHQHIIHSNTGMCLDHQGLKSLDD 582


>AE013599-2068|AAM70974.1|  601|Drosophila melanogaster CG8182-PA,
           isoform A protein.
          Length = 601

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 14/58 (24%), Positives = 25/58 (43%)
 Frame = -1

Query: 237 QVSCMQLHHSSQPKHIVLLASCQEL*RLREDRAQDHRGLKLSLAPLAMLHSRXMLLPD 64
           ++SC  + HS  P + V++  C E     E    +H+ +  S   + + H     L D
Sbjct: 525 ELSCATVQHSESPPYRVVMVPCMENDEFNEQWRYEHQHIIHSNTGMCLDHQGLKSLDD 582


>BT010257-1|AAQ23575.1|  893|Drosophila melanogaster RE34565p
           protein.
          Length = 893

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = -1

Query: 273 QVESDVRCTEPEQVSCMQLHHSSQPKHIVLLASCQ 169
           QV+ +   + PE+ SC  ++H   P +  L  SC+
Sbjct: 128 QVKQEFMESPPERPSCHPMNHQQAPANSALATSCR 162


>AE014134-2224|AAF53208.2|  893|Drosophila melanogaster CG12287-PB,
           isoform B protein.
          Length = 893

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = -1

Query: 273 QVESDVRCTEPEQVSCMQLHHSSQPKHIVLLASCQ 169
           QV+ +   + PE+ SC  ++H   P +  L  SC+
Sbjct: 128 QVKQEFMESPPERPSCHPMNHQQAPANSALATSCR 162


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,633,945
Number of Sequences: 53049
Number of extensions: 430947
Number of successful extensions: 1315
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 1242
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1315
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 1825511424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)