Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0389
(507 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U00067-8|AAK20077.1| 140|Caenorhabditis elegans Ribosomal prote... 134 3e-32
AL023844-2|CAA19527.1| 163|Caenorhabditis elegans Hypothetical ... 35 0.039
U21319-5|AAL02454.1| 1100|Caenorhabditis elegans Hypothetical pr... 29 1.5
U21319-4|AAL02455.1| 1097|Caenorhabditis elegans Hypothetical pr... 29 1.5
AC006729-4|AAK84600.1| 265|Caenorhabditis elegans Ribosomal pro... 29 1.9
AC006729-3|AAM15612.1| 245|Caenorhabditis elegans Ribosomal pro... 29 1.9
U88311-6|AAB42347.1| 382|Caenorhabditis elegans Hypothetical pr... 29 2.6
AF067621-1|AAC17540.2| 4368|Caenorhabditis elegans Hypothetical ... 28 3.4
AC024805-6|AAK39340.1| 448|Caenorhabditis elegans Hypothetical ... 28 3.4
Z83238-11|CAE11318.1| 326|Caenorhabditis elegans Hypothetical p... 28 4.5
Z81114-2|CAB03286.1| 604|Caenorhabditis elegans Hypothetical pr... 28 4.5
Z66521-1|CAA91393.2| 382|Caenorhabditis elegans Hypothetical pr... 28 4.5
U29614-3|AAA68811.1| 91|Caenorhabditis elegans Hypothetical pr... 27 7.8
AF098989-1|AAK18955.1| 1219|Caenorhabditis elegans Defective spe... 27 7.8
>U00067-8|AAK20077.1| 140|Caenorhabditis elegans Ribosomal protein,
small subunitprotein 12 protein.
Length = 140
Score = 134 bits (324), Expect = 3e-32
Identities = 62/101 (61%), Positives = 75/101 (74%)
Frame = +3
Query: 93 ALQEVLKTALIHGGLVHGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCNEHQIPL 272
AL+ VL+ A GL GLHE KALDKR+A CVLAENCDE Y KLV+ LC EHQIPL
Sbjct: 25 ALRAVLRAAHHADGLAKGLHETCKALDKREAHFCVLAENCDEPQYVKLVETLCAEHQIPL 84
Query: 273 VKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVVIKDFGEE 395
+KV + K +GE+ GLCK DK+GKARK+VGCS V+ ++G E
Sbjct: 85 IKVADKKIIGEYCGLCKYDKEGKARKVVGCSSAVVTNWGNE 125
>AL023844-2|CAA19527.1| 163|Caenorhabditis elegans Hypothetical
protein Y48A6B.3 protein.
Length = 163
Score = 34.7 bits (76), Expect = 0.039
Identities = 15/56 (26%), Positives = 28/56 (50%)
Frame = +3
Query: 135 LVHGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCNEHQIPLVKVDNNKKLG 302
L G+ + K L + + +C+LA N + +C E +IP V + + ++LG
Sbjct: 69 LREGIKDVQKELRRNEKGICILAGNVSPIDVYSHIPGICEEKEIPYVYIPSREQLG 124
>U21319-5|AAL02454.1| 1100|Caenorhabditis elegans Hypothetical
protein C30G12.6a protein.
Length = 1100
Score = 29.5 bits (63), Expect = 1.5
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = -2
Query: 230 LVCSFITVLSQNT*YCLPLVKSFSGFVK 147
L+C+ I ++ Q + CLPLVK F+ + K
Sbjct: 818 LMCAIIMLVFQKSNECLPLVKIFASYCK 845
>U21319-4|AAL02455.1| 1097|Caenorhabditis elegans Hypothetical
protein C30G12.6b protein.
Length = 1097
Score = 29.5 bits (63), Expect = 1.5
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = -2
Query: 230 LVCSFITVLSQNT*YCLPLVKSFSGFVK 147
L+C+ I ++ Q + CLPLVK F+ + K
Sbjct: 818 LMCAIIMLVFQKSNECLPLVKIFASYCK 845
>AC006729-4|AAK84600.1| 265|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7A, isoform a protein.
Length = 265
Score = 29.1 bits (62), Expect = 1.9
Identities = 12/54 (22%), Positives = 27/54 (50%)
Frame = +3
Query: 141 HGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCNEHQIPLVKVDNNKKLG 302
HG++ + ++ R+A L ++A + + + ALC ++ +P + LG
Sbjct: 139 HGVNTITRLVETRRAQLVLIAHDVNPLEIVLHLPALCRKYNVPYAIIKGKASLG 192
>AC006729-3|AAM15612.1| 245|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7A, isoform c protein.
Length = 245
Score = 29.1 bits (62), Expect = 1.9
Identities = 12/54 (22%), Positives = 27/54 (50%)
Frame = +3
Query: 141 HGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCNEHQIPLVKVDNNKKLG 302
HG++ + ++ R+A L ++A + + + ALC ++ +P + LG
Sbjct: 119 HGVNTITRLVETRRAQLVLIAHDVNPLEIVLHLPALCRKYNVPYAIIKGKASLG 172
>U88311-6|AAB42347.1| 382|Caenorhabditis elegans Hypothetical
protein C10H11.8 protein.
Length = 382
Score = 28.7 bits (61), Expect = 2.6
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +3
Query: 252 NEHQIPLVKVDNNKKLGEWAGLCK 323
N++Q+ + V+NNKK+ +W G K
Sbjct: 345 NDNQVKIWDVENNKKVAQWDGHIK 368
>AF067621-1|AAC17540.2| 4368|Caenorhabditis elegans Hypothetical
protein F55F10.1 protein.
Length = 4368
Score = 28.3 bits (60), Expect = 3.4
Identities = 19/55 (34%), Positives = 30/55 (54%)
Frame = +3
Query: 153 EAAKALDKRQAVLCVLAENCDEAAYKKLVQALCNEHQIPLVKVDNNKKLGEWAGL 317
E KALD+ Q ++ VL + CD A K ++++ EH + N + L E AG+
Sbjct: 3504 EEDKALDQIQVLVDVLKQ-CDIQAVVKSLKSIVEEHCSGEKRRKNLEGLAELAGI 3557
>AC024805-6|AAK39340.1| 448|Caenorhabditis elegans Hypothetical
protein Y51H7C.9 protein.
Length = 448
Score = 28.3 bits (60), Expect = 3.4
Identities = 16/36 (44%), Positives = 21/36 (58%)
Frame = +3
Query: 129 GGLVHGLHEAAKALDKRQAVLCVLAENCDEAAYKKL 236
GGLV G+ A KAL V+ V++E C +A K L
Sbjct: 216 GGLVAGVATAVKALSPTTEVIGVVSETC-QAIVKSL 250
>Z83238-11|CAE11318.1| 326|Caenorhabditis elegans Hypothetical
protein T08G3.12 protein.
Length = 326
Score = 27.9 bits (59), Expect = 4.5
Identities = 25/100 (25%), Positives = 48/100 (48%), Gaps = 8/100 (8%)
Frame = +3
Query: 6 SNSQQPWLMLKSRSPPTPSCRVTTWXVNVALQEVLKTALIHGGL--------VHGLHEAA 161
SNS+Q + + P PS +T V +++LK L+H G+ ++ +
Sbjct: 160 SNSEQSRHNIAKKFPCIPSRIITDPGFYVVTEDLLKAVLLHLGILTFTTVQVLYFFYHTV 219
Query: 162 KALDKRQAVLCVLAENCDEAAYKKLVQALCNEHQIPLVKV 281
K L K + +++E+ + K+L +ALC + IP + +
Sbjct: 220 KYLFKSK----IISES-TKRLQKQLFKALCIQVTIPTIAI 254
>Z81114-2|CAB03286.1| 604|Caenorhabditis elegans Hypothetical
protein T04D3.2 protein.
Length = 604
Score = 27.9 bits (59), Expect = 4.5
Identities = 17/48 (35%), Positives = 25/48 (52%)
Frame = +3
Query: 84 VNVALQEVLKTALIHGGLVHGLHEAAKALDKRQAVLCVLAENCDEAAY 227
V VAL + T LIH +H L++ K L V C+L ++ +A Y
Sbjct: 16 VVVALSDRQYTFLIHS-FIHSLYQHTKRLLFSDFVSCLLPKHLQQAMY 62
>Z66521-1|CAA91393.2| 382|Caenorhabditis elegans Hypothetical
protein W02B12.1 protein.
Length = 382
Score = 27.9 bits (59), Expect = 4.5
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = +2
Query: 89 CSIARGAKDSFNPRWSC 139
CS+A G KD P WSC
Sbjct: 11 CSLAHGLKDLGAPNWSC 27
>U29614-3|AAA68811.1| 91|Caenorhabditis elegans Hypothetical
protein F18E9.6 protein.
Length = 91
Score = 27.1 bits (57), Expect = 7.8
Identities = 17/53 (32%), Positives = 22/53 (41%)
Frame = +1
Query: 208 TVMKLHTRNLFRLCATNIRFHLSRLTTTKSLENGLVSARLTRMARQGKLSAAP 366
T M L T+ L + T +R LTT GL RLT + + S P
Sbjct: 14 TTMDLTTKGLSTMGLTTMRLTTMDLTTKGLSTMGLTRMRLTTIGLYNRTSGGP 66
>AF098989-1|AAK18955.1| 1219|Caenorhabditis elegans Defective
spermatogenesis protein15 protein.
Length = 1219
Score = 27.1 bits (57), Expect = 7.8
Identities = 15/55 (27%), Positives = 22/55 (40%)
Frame = +1
Query: 250 ATNIRFHLSRLTTTKSLENGLVSARLTRMARQGKLSAAPVLSSKISARKLQRWMC 414
+T+ RL G V+AR+T +A G A S ++ R W C
Sbjct: 4 STHSTADFGRLVWISDEAEGFVAARITDIAENGFTLATEKTSETVNRRYEDTWAC 58
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,846,822
Number of Sequences: 27780
Number of extensions: 217882
Number of successful extensions: 653
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 626
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 653
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 977860456
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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