Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0389
         (507 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    24   1.0  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   5.6  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    21   7.3  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   9.7  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   9.7  

>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 23.8 bits (49), Expect = 1.0
 Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
 Frame = +3

Query: 231 KLVQALCNEHQIPLVKVDNNKKLGEWAGLCKIDKDGKARK--IVGCSCV 371
           KL+  +  E    L +VD  + LGE   L   D   K +K  + GC CV
Sbjct: 564 KLIDNIKKEIYDILPEVDVEEILGEAKVLQNFDIKDKNKKVNVAGCRCV 612


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = -1

Query: 69  PDKMGLVGTSTSTSAMVVDY 10
           PDK  L+G  T      VDY
Sbjct: 447 PDKYDLIGNGTKLIIKNVDY 466


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 6/14 (42%), Positives = 12/14 (85%)
 Frame = -3

Query: 370 TQEQPTIFLALPSL 329
           T++Q T+F+A+P +
Sbjct: 67  TEQQSTVFVAIPRI 80


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 20.6 bits (41), Expect = 9.7
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -1

Query: 279  P*QVESDVRCTEPEQVSCMQLHHSSQ 202
            P  VESD   ++P+Q++  +   S+Q
Sbjct: 1777 PGDVESDESESDPDQLTSSRTESSNQ 1802


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 20.6 bits (41), Expect = 9.7
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -1

Query: 279  P*QVESDVRCTEPEQVSCMQLHHSSQ 202
            P  VESD   ++P+Q++  +   S+Q
Sbjct: 1773 PGDVESDESESDPDQLTSSRTESSNQ 1798


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 127,689
Number of Sequences: 438
Number of extensions: 2287
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13986774
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)