Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0389
(507 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g32060.3 68415.m03918 40S ribosomal protein S12 (RPS12C) 143 5e-35
At2g32060.2 68415.m03917 40S ribosomal protein S12 (RPS12C) 143 5e-35
At2g32060.1 68415.m03916 40S ribosomal protein S12 (RPS12C) 143 5e-35
At1g15930.2 68414.m01912 40S ribosomal protein S12 (RPS12A) simi... 138 2e-33
At1g15930.1 68414.m01911 40S ribosomal protein S12 (RPS12A) simi... 138 2e-33
At5g08180.1 68418.m00955 ribosomal protein L7Ae/L30e/S12e/Gadd45... 32 0.19
At1g76780.1 68414.m08935 expressed protein ; expression supporte... 31 0.34
At1g58190.1 68414.m06605 leucine-rich repeat family protein cont... 31 0.45
At3g62870.1 68416.m07063 60S ribosomal protein L7A (RPL7aB) 60S ... 30 0.78
At2g47610.1 68415.m05940 60S ribosomal protein L7A (RPL7aA) 30 0.78
At5g65130.1 68418.m08193 AP2 domain-containing transcription fac... 30 1.0
At1g17960.1 68414.m02222 threonyl-tRNA synthetase, putative / th... 29 1.8
At1g51920.1 68414.m05853 expressed protein 29 2.4
At1g77110.1 68414.m08981 auxin transport protein, putative simil... 28 4.2
At5g45640.1 68418.m05612 subtilase family protein contains Pfam ... 27 7.3
At3g10690.1 68416.m01286 DNA gyrase subunit A family protein sim... 27 7.3
At2g26000.1 68415.m03122 zinc finger (C3HC4-type RING finger) fa... 27 9.6
At2g02980.1 68415.m00250 pentatricopeptide (PPR) repeat-containi... 27 9.6
>At2g32060.3 68415.m03918 40S ribosomal protein S12 (RPS12C)
Length = 144
Score = 143 bits (347), Expect = 5e-35
Identities = 64/107 (59%), Positives = 84/107 (78%)
Frame = +3
Query: 84 VNVALQEVLKTALIHGGLVHGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCNEHQ 263
V+ AL+ ++ + +GG+V GLHE+AK ++KR A LCVLAE+C++ Y KLV+ALC +H
Sbjct: 27 VSTALELTVRKSRAYGGVVRGLHESAKLIEKRNAQLCVLAEDCNQPDYVKLVKALCADHS 86
Query: 264 IPLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVVIKDFGEETPA 404
I L+ V + K LGEWAGLCKID +G ARK+VGCSC+VIKDFGEET A
Sbjct: 87 IKLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCSCLVIKDFGEETTA 133
>At2g32060.2 68415.m03917 40S ribosomal protein S12 (RPS12C)
Length = 144
Score = 143 bits (347), Expect = 5e-35
Identities = 64/107 (59%), Positives = 84/107 (78%)
Frame = +3
Query: 84 VNVALQEVLKTALIHGGLVHGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCNEHQ 263
V+ AL+ ++ + +GG+V GLHE+AK ++KR A LCVLAE+C++ Y KLV+ALC +H
Sbjct: 27 VSTALELTVRKSRAYGGVVRGLHESAKLIEKRNAQLCVLAEDCNQPDYVKLVKALCADHS 86
Query: 264 IPLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVVIKDFGEETPA 404
I L+ V + K LGEWAGLCKID +G ARK+VGCSC+VIKDFGEET A
Sbjct: 87 IKLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCSCLVIKDFGEETTA 133
>At2g32060.1 68415.m03916 40S ribosomal protein S12 (RPS12C)
Length = 144
Score = 143 bits (347), Expect = 5e-35
Identities = 64/107 (59%), Positives = 84/107 (78%)
Frame = +3
Query: 84 VNVALQEVLKTALIHGGLVHGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCNEHQ 263
V+ AL+ ++ + +GG+V GLHE+AK ++KR A LCVLAE+C++ Y KLV+ALC +H
Sbjct: 27 VSTALELTVRKSRAYGGVVRGLHESAKLIEKRNAQLCVLAEDCNQPDYVKLVKALCADHS 86
Query: 264 IPLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVVIKDFGEETPA 404
I L+ V + K LGEWAGLCKID +G ARK+VGCSC+VIKDFGEET A
Sbjct: 87 IKLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCSCLVIKDFGEETTA 133
>At1g15930.2 68414.m01912 40S ribosomal protein S12 (RPS12A) similar
to 40S ribosomal protein S12 GI:4263712 from
[Arabidopsis thaliana]
Length = 144
Score = 138 bits (334), Expect = 2e-33
Identities = 62/104 (59%), Positives = 81/104 (77%)
Frame = +3
Query: 93 ALQEVLKTALIHGGLVHGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCNEHQIPL 272
AL+ L+ A +GG+V GLHE AK ++KR A L VLAE+C++ Y KLV+ALC +H++ L
Sbjct: 30 ALELTLRKARAYGGVVRGLHECAKLIEKRVAQLVVLAEDCNQPDYVKLVKALCADHEVRL 89
Query: 273 VKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVVIKDFGEETPA 404
+ V + K LGEWAGLCKID +G ARK+VGCSC+V+KDFGEET A
Sbjct: 90 LTVPSAKTLGEWAGLCKIDSEGNARKVVGCSCLVVKDFGEETTA 133
>At1g15930.1 68414.m01911 40S ribosomal protein S12 (RPS12A) similar
to 40S ribosomal protein S12 GI:4263712 from
[Arabidopsis thaliana]
Length = 144
Score = 138 bits (334), Expect = 2e-33
Identities = 62/104 (59%), Positives = 81/104 (77%)
Frame = +3
Query: 93 ALQEVLKTALIHGGLVHGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCNEHQIPL 272
AL+ L+ A +GG+V GLHE AK ++KR A L VLAE+C++ Y KLV+ALC +H++ L
Sbjct: 30 ALELTLRKARAYGGVVRGLHECAKLIEKRVAQLVVLAEDCNQPDYVKLVKALCADHEVRL 89
Query: 273 VKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVVIKDFGEETPA 404
+ V + K LGEWAGLCKID +G ARK+VGCSC+V+KDFGEET A
Sbjct: 90 LTVPSAKTLGEWAGLCKIDSEGNARKVVGCSCLVVKDFGEETTA 133
>At5g08180.1 68418.m00955 ribosomal protein L7Ae/L30e/S12e/Gadd45
family protein Similar to NHP2/L7Ae family proteins, see
SWISSPROT:P32495 and PMID:2063628.
Length = 156
Score = 32.3 bits (70), Expect = 0.19
Identities = 20/63 (31%), Positives = 30/63 (47%)
Frame = +3
Query: 135 LVHGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCNEHQIPLVKVDNNKKLGEWAG 314
L G+ E K++ + Q LCV+A N + LC E +P V V + + L + AG
Sbjct: 51 LKRGVKEVVKSIRRGQKGLCVIAGNISPIDVITHLPILCEEAGVPYVYVPSKEDLAQ-AG 109
Query: 315 LCK 323
K
Sbjct: 110 ATK 112
>At1g76780.1 68414.m08935 expressed protein ; expression supported by
MPSS
Length = 1871
Score = 31.5 bits (68), Expect = 0.34
Identities = 23/85 (27%), Positives = 41/85 (48%)
Frame = +3
Query: 105 VLKTALIHGGLVHGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCNEHQIPLVKVD 284
V+K G L +GL + K + + + L E+ ++ +KK+ + P+++
Sbjct: 1364 VVKLVAEDGSLRNGLEFSEK--ESTVSKMLKLDESKEKEEHKKIRKPTEERSNAPVIEKQ 1421
Query: 285 NNKKLGEWAGLCKIDKDGKARKIVG 359
NKK E KID+ GK ++I G
Sbjct: 1422 GNKKNAEEEMQDKIDRRGKNQEIKG 1446
>At1g58190.1 68414.m06605 leucine-rich repeat family protein contains
leucine rich-repeat (LRR) domains Pfam:PF00560,
INTERPRO:IPR001611; contains similarity to Cf-2.2
[Lycopersicon pimpinellifolium] gi|1184077|gb|AAC15780
Length = 1784
Score = 31.1 bits (67), Expect = 0.45
Identities = 20/73 (27%), Positives = 35/73 (47%)
Frame = +3
Query: 108 LKTALIHGGLVHGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCNEHQIPLVKVDN 287
LKT ++HG + G + ++ R L L++N + V L N H + + + +
Sbjct: 1008 LKTLILHGNNMEGTFPMKELINLRNLELLDLSKN----QFVGPVPDLANFHNLQGLDMSD 1063
Query: 288 NKKLGEWAGLCKI 326
NK G GLC++
Sbjct: 1064 NKFSGSNKGLCQL 1076
>At3g62870.1 68416.m07063 60S ribosomal protein L7A (RPL7aB) 60S
RIBOSOMAL PROTEIN L7A - Oryza sativa,
SWISSPROT:RL7A_ORYSA
Length = 256
Score = 30.3 bits (65), Expect = 0.78
Identities = 14/54 (25%), Positives = 27/54 (50%)
Frame = +3
Query: 141 HGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCNEHQIPLVKVDNNKKLG 302
+GL+ +++ +A L V+A + D + ALC + ++P V +LG
Sbjct: 128 YGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEVPYCIVKGKSRLG 181
>At2g47610.1 68415.m05940 60S ribosomal protein L7A (RPL7aA)
Length = 257
Score = 30.3 bits (65), Expect = 0.78
Identities = 14/54 (25%), Positives = 27/54 (50%)
Frame = +3
Query: 141 HGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCNEHQIPLVKVDNNKKLG 302
+GL+ +++ +A L V+A + D + ALC + ++P V +LG
Sbjct: 129 YGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEVPYCIVKGKSRLG 182
>At5g65130.1 68418.m08193 AP2 domain-containing transcription
factor, putative similar to AP2 domain transcription
factor
Length = 277
Score = 29.9 bits (64), Expect = 1.0
Identities = 12/43 (27%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = +3
Query: 237 VQALCNEHQIPLVKVDNNKKLGE-WAGLCKIDKDGKARKIVGC 362
++++CN +PL +++ K E +G K +K+ + +I GC
Sbjct: 187 IESICNSSDLPLPQIEKQNKTEEVLSGFSKPEKEPEFGEIYGC 229
>At1g17960.1 68414.m02222 threonyl-tRNA synthetase, putative /
threonine--tRNA ligase, putative similar to SP|O04630
Threonyl-tRNA synthetase, mitochondrial precursor (EC
6.1.1.3) (Threonine--tRNA ligase) (ThrRS) {Arabidopsis
thaliana}; contains Pfam profiles PF00587: tRNA
synthetase class II core domain (G, H, P, S and T),
PF03129: Anticodon binding domain, PF02824: TGS domain
Length = 458
Score = 29.1 bits (62), Expect = 1.8
Identities = 14/30 (46%), Positives = 20/30 (66%)
Frame = +3
Query: 168 LDKRQAVLCVLAENCDEAAYKKLVQALCNE 257
L RQA++C L+E+C ++Y K VQ NE
Sbjct: 355 LSPRQAIVCSLSEDC--SSYAKQVQKQINE 382
>At1g51920.1 68414.m05853 expressed protein
Length = 78
Score = 28.7 bits (61), Expect = 2.4
Identities = 19/48 (39%), Positives = 23/48 (47%)
Frame = -1
Query: 345 LPCHPCQSCRDQPILQAFCCCQP*QVESDVRCTEPEQVSCMQLHHSSQ 202
+P P S R PI A CC+P + S RC V+ Q HH SQ
Sbjct: 33 IPRAPISSRR--PICPACVCCEPAPLGSCCRCCASPIVT--QTHHHSQ 76
>At1g77110.1 68414.m08981 auxin transport protein, putative similar
to auxin transport protein EIR1 GI:3377507 from
[Arabidopsis thaliana]
Length = 570
Score = 27.9 bits (59), Expect = 4.2
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Frame = -2
Query: 323 LAETSPFSKLFVVVNLDKWNLMFVAQSLNKFLVCSFITVLSQNT*YCLPLVKSFSG-FVK 147
LA+T SK+FV V L W + F A L+ + I L +PL+++ G + +
Sbjct: 73 LADT--LSKIFVFVLLSLWAVFFKAGGLDWLITLFSIATLPNTLVMGIPLLQAMYGDYTQ 130
Query: 146 TVHKTTVD*SCL 111
T+ V C+
Sbjct: 131 TLMVQLVVLQCI 142
>At5g45640.1 68418.m05612 subtilase family protein contains Pfam
domain, PF00082: Subtilase family; contains Pfam domain,
PF02225: protease associated (PA) domain
Length = 754
Score = 27.1 bits (57), Expect = 7.3
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -1
Query: 192 IVLLASCQEL*RLREDRAQDHRGLKLSLAP 103
+ LLASC + +LRE+RA G L P
Sbjct: 18 VPLLASCTKEKQLREERASSINGFAAELTP 47
>At3g10690.1 68416.m01286 DNA gyrase subunit A family protein
similar to SP|P94605 DNA gyrase subunit A (EC 5.99.1.3).
{Clostridium acetobutylicum}; contains Pfam profiles
PF00521: DNA gyrase/topoisomerase IV A subunit, PF03989:
DNA gyrase C-terminal domain beta-propeller
Length = 950
Score = 27.1 bits (57), Expect = 7.3
Identities = 17/56 (30%), Positives = 26/56 (46%)
Frame = -1
Query: 354 QFSLPCHPCQSCRDQPILQAFCCCQP*QVESDVRCTEPEQVSCMQLHHSSQPKHIV 187
Q S C+ C +P L + Q D RC+ E+ + +L H+ Q KHI+
Sbjct: 422 QSSFSCNMVGICDGEPKLMGLK--ELLQAFIDFRCSVVERRARFKLSHAQQRKHII 475
>At2g26000.1 68415.m03122 zinc finger (C3HC4-type RING finger)
family protein similar to BRCA1-associated protein 2
[Homo sapiens] GI:3252872; contains Pfam profiles
PF00097: Zinc finger, C3HC4 type (RING finger), PF02148:
Zn-finger in ubiquitin-hydrolases and other protein
Length = 461
Score = 26.6 bits (56), Expect = 9.6
Identities = 19/72 (26%), Positives = 25/72 (34%)
Frame = -1
Query: 339 CHPCQSCRDQPILQAFCCCQP*QVESDVRCTEPEQVSCMQLHHSSQPKHIVLLASCQEL* 160
C C+ C+ QP C CQ E+ C V C + +H C L
Sbjct: 203 CPVCRYCQQQPENSVCCVCQ--TTENLWMCVICGVVGCGRYKEGHARRHWEETEHCYSL- 259
Query: 159 RLREDRAQDHRG 124
L R D+ G
Sbjct: 260 ELETQRVWDYAG 271
>At2g02980.1 68415.m00250 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 603
Score = 26.6 bits (56), Expect = 9.6
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +3
Query: 288 NKKLGEWAGLCKIDKDGKARKIVGCSCVVIKDFGEE 395
NKK L K+ KD KA K+ GCS + + + E
Sbjct: 446 NKKWEYVDSLRKVMKDRKAVKVPGCSSIEVNNVVHE 481
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,261,661
Number of Sequences: 28952
Number of extensions: 198368
Number of successful extensions: 584
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 569
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 583
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 908059136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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