Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0388
(700 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_3123| Best HMM Match : No HMM Matches (HMM E-Value=.) 92 3e-19
SB_42056| Best HMM Match : TPR_3 (HMM E-Value=1.3) 32 0.51
SB_6359| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6
SB_29418| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_48435| Best HMM Match : Ion_trans (HMM E-Value=1.7e-11) 29 4.8
SB_857| Best HMM Match : Mago_nashi (HMM E-Value=0) 29 4.8
SB_31612| Best HMM Match : Aminotran_1_2 (HMM E-Value=7.8e-12) 28 6.3
SB_15596| Best HMM Match : 7tm_1 (HMM E-Value=0.0026) 28 6.3
SB_38519| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3
SB_27310| Best HMM Match : CUB (HMM E-Value=9.7e-17) 28 8.4
SB_33645| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.4
SB_22497| Best HMM Match : Ras (HMM E-Value=7.7e-07) 28 8.4
SB_12617| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.4
>SB_3123| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 259
Score = 92.3 bits (219), Expect = 3e-19
Identities = 40/83 (48%), Positives = 55/83 (66%)
Frame = +3
Query: 369 GHSDVIMGAAIVNDKAIGDKLRFLQNAMGIVPSPIDCYFVNRSLKTLALRMEHHKKSSLI 548
GHSDV G N+ + KL+FLQ A G VPSP DCY NR LKTL +RM H++++
Sbjct: 113 GHSDVCTGVIATNNDELAKKLKFLQFASGPVPSPFDCYLANRGLKTLHVRMREHERNAKA 172
Query: 549 IANWLEKHPKIVEVLHPXLXTHP 617
+A++LEK P++ V +P L +HP
Sbjct: 173 VASFLEKDPRVTAVKYPGLQSHP 195
Score = 31.9 bits (69), Expect = 0.51
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = +3
Query: 3 TTTLVALLNHGDHIVSSDDVYGGTNRLLRQVVS 101
T LV L GDHI DDVYGG + + V++
Sbjct: 91 TMLLVHTLKSGDHIACIDDVYGGHSDVCTGVIA 123
>SB_42056| Best HMM Match : TPR_3 (HMM E-Value=1.3)
Length = 215
Score = 31.9 bits (69), Expect = 0.51
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = +3
Query: 24 LNHGDHIVSSDDVYGGTNRLLRQVVSRLGINTTFTDFT-NIEKVKNAMQENT 176
L+H D++ DV L +V LG NT D + N+ K+K+ ++ NT
Sbjct: 123 LDHSDNLNRLKDVIESNMSLKAMLVPSLGFNTDTLDHSDNLNKLKDVIESNT 174
>SB_6359| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 309
Score = 30.3 bits (65), Expect = 1.6
Identities = 12/48 (25%), Positives = 25/48 (52%)
Frame = +3
Query: 123 FTDFTNIEKVKNAMQENTKMIWIETPTNPLLKVVDIEAIVKIARSRGD 266
F + +N+E K QE + +++E NP K+V ++++ G+
Sbjct: 175 FCELSNLESFKQEQQEWLESVFLEAQVNPPQKIVVLQSVAWFRSDGGE 222
>SB_29418| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 427
Score = 29.5 bits (63), Expect = 2.7
Identities = 24/97 (24%), Positives = 41/97 (42%), Gaps = 12/97 (12%)
Frame = -1
Query: 310 CKYGVKKVLSTTTIMSPRL----LAIFTIASMSTTFNNGFVGVSIQIILVFSCMAFFT-- 149
C +K + TTI P L + I +I M+T + +I I + + +T
Sbjct: 138 CAITIKSIPDMTTIYIPNLHTCAITIKSIPDMTTIYTPNLHTFAIPIQFILDMITIYTPN 197
Query: 148 ---FSIFVKSVN---VVLIPNLETTCLNSLFVPPYTS 56
+I +KS+ + PNL T + F+P T+
Sbjct: 198 LHTCAIPIKSITDMTTIYTPNLHTCAIPIQFIPDMTT 234
Score = 28.3 bits (60), Expect = 6.3
Identities = 24/98 (24%), Positives = 42/98 (42%), Gaps = 12/98 (12%)
Frame = -1
Query: 310 CKYGVKKVLSTTTIMSPRL----LAIFTIASMSTTFNNGFVGVSIQIILVFSCMAFF--- 152
C +K + TTI +P L + I +I M+T + +I I + +
Sbjct: 285 CAITIKSIPDMTTIYTPNLHTCAITIKSIPDMTTIYTPNLHTCAITIKSIPKMTTIYIPN 344
Query: 151 --TFSIFVKSV---NVVLIPNLETTCLNSLFVPPYTSS 53
T +I +KS+ + PNL T + F+P T++
Sbjct: 345 PHTCAIQIKSIPDMTTIYTPNLHTCAIPIQFIPDMTTT 382
Score = 27.9 bits (59), Expect = 8.4
Identities = 24/97 (24%), Positives = 41/97 (42%), Gaps = 12/97 (12%)
Frame = -1
Query: 310 CKYGVKKVLSTTTIMSPRL----LAIFTIASMSTTFNNGFVGVSIQIILVFSCMAFF--- 152
C +K + TTI +P L + I +I M+T + +I I + +
Sbjct: 12 CAITIKSIPDMTTIYTPNLHTCAITIKSIPDMTTIYTPNLHTCAITIKSIPKMTTIYIPN 71
Query: 151 --TFSIFVKSV---NVVLIPNLETTCLNSLFVPPYTS 56
T +I +KS+ + PNL T + F+P T+
Sbjct: 72 PHTCAIQIKSIPDMTTIYTPNLHTCAIPIQFIPDMTT 108
>SB_48435| Best HMM Match : Ion_trans (HMM E-Value=1.7e-11)
Length = 1496
Score = 28.7 bits (61), Expect = 4.8
Identities = 25/84 (29%), Positives = 36/84 (42%), Gaps = 1/84 (1%)
Frame = -1
Query: 349 EYITMSAPKSKGFCKYGVKKVLSTT-TIMSPRLLAIFTIASMSTTFNNGFVGVSIQIILV 173
E I A K + K V S T + L +F IA + F N + + +IIL
Sbjct: 670 EEIRQLAAKPPKYIKDKVSVYFSDTWNFVDIFSLTVFIIAIILRFFTNSRIFTASRIILS 729
Query: 172 FSCMAFFTFSIFVKSVNVVLIPNL 101
+ F S+ + SVN +L P L
Sbjct: 730 LDIIFFIVRSLQIFSVNRLLGPKL 753
>SB_857| Best HMM Match : Mago_nashi (HMM E-Value=0)
Length = 900
Score = 28.7 bits (61), Expect = 4.8
Identities = 14/53 (26%), Positives = 25/53 (47%)
Frame = +2
Query: 320 RFRSGHRYVLANEIYEWSF*RHNGSRYCK*QSYRRQTKILAKRHGHRSVTDRL 478
R+ GH+ +E E+ F RY +Y+ T I + + H++V + L
Sbjct: 10 RYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEVYCHKAVIEEL 62
>SB_31612| Best HMM Match : Aminotran_1_2 (HMM E-Value=7.8e-12)
Length = 398
Score = 28.3 bits (60), Expect = 6.3
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Frame = +3
Query: 117 TTFTDFT-NIEKVKNAMQENTKMIWIETPTNPLLKVVDIEAIVKIAR--SRGDIIVVVDN 287
T+ DF + E++++ TK + I TP NPL KV + IA R +I+ + D
Sbjct: 193 TSSKDFLLDPEELESKFSSKTKAMVINTPNNPLGKVFSRSELEMIANLCIRHNILCISDE 252
Query: 288 TF 293
+
Sbjct: 253 VY 254
>SB_15596| Best HMM Match : 7tm_1 (HMM E-Value=0.0026)
Length = 502
Score = 28.3 bits (60), Expect = 6.3
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = -1
Query: 289 VLSTTTIMSPRLLAIFT-IASMSTTFNNGFVGVSIQIILVFSCMAFFTFSIFV 134
VL T + L +F + + S + G +G++I + F C AF F IFV
Sbjct: 423 VLCVTPMYILELTRLFYYMINRSALDSIGLIGLTISFFVAFMCPAFSPFIIFV 475
>SB_38519| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 172
Score = 28.3 bits (60), Expect = 6.3
Identities = 16/29 (55%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Frame = -2
Query: 228 CQRLLIMDLLG-SLSRSSW-CFLAWRSLL 148
CQR L SLSR W CFL W+SLL
Sbjct: 62 CQRNTSKRLAALSLSRCHWLCFLTWQSLL 90
>SB_27310| Best HMM Match : CUB (HMM E-Value=9.7e-17)
Length = 761
Score = 27.9 bits (59), Expect = 8.4
Identities = 16/49 (32%), Positives = 20/49 (40%)
Frame = -1
Query: 256 LLAIFTIASMSTTFNNGFVGVSIQIILVFSCMAFFTFSIFVKSVNVVLI 110
L +F F FV VF AFF F +FV V+VV +
Sbjct: 695 LFVVFAFVVFIFIFFFAFVIFVFNAFFVFVVFAFFVFLVFVFFVSVVFV 743
>SB_33645| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 125
Score = 27.9 bits (59), Expect = 8.4
Identities = 18/82 (21%), Positives = 34/82 (41%)
Frame = -1
Query: 298 VKKVLSTTTIMSPRLLAIFTIASMSTTFNNGFVGVSIQIILVFSCMAFFTFSIFVKSVNV 119
VKK+ P ++ I T + +TT ++ + + I + + V
Sbjct: 4 VKKLKKGIYKQHPHIIIITTTTTTTTTTTTTTTTITTTTTTTINIIIIIIIIIIIIFIIV 63
Query: 118 VLIPNLETTCLNSLFVPPYTSS 53
++I + + +NS PP TSS
Sbjct: 64 LIIVVVIPSIINSSMYPPLTSS 85
>SB_22497| Best HMM Match : Ras (HMM E-Value=7.7e-07)
Length = 769
Score = 27.9 bits (59), Expect = 8.4
Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Frame = +2
Query: 134 YKY*KSKERHARKHQD-DLDRDPNKSIIKSR*H*GDRKDREESRRH 268
+K K KE H K + D D K KSR GD+K + +H
Sbjct: 705 HKKSKDKEEHKEKRRSRHKDNDSAKEHRKSRDEEGDKKKKSSKHKH 750
>SB_12617| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 137
Score = 27.9 bits (59), Expect = 8.4
Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Frame = +2
Query: 134 YKY*KSKERHARKHQD-DLDRDPNKSIIKSR*H*GDRKDREESRRH 268
+K K KE H K + D D K KSR GD+K + +H
Sbjct: 73 HKKSKDKEEHKEKRRSRHKDNDSAKEHRKSRDEEGDKKKKSSKHKH 118
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,934,142
Number of Sequences: 59808
Number of extensions: 392808
Number of successful extensions: 911
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 862
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 908
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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