Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0388
         (700 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY089545-1|AAL90283.1|  393|Drosophila melanogaster LD22255p pro...   272   3e-73
AE013599-2732|AAF57663.1|  393|Drosophila melanogaster CG5345-PA...   272   3e-73
AF095822-1|AAD17839.1|  393|Drosophila melanogaster ecdysteroid-...   269   2e-72
BT003457-1|AAO39460.1|  985|Drosophila melanogaster RH34107p pro...    33   0.28 
AE014297-1126|AAF54512.1|  985|Drosophila melanogaster CG3999-PA...    33   0.28 
AY069489-1|AAL39634.1|  973|Drosophila melanogaster LD21888p pro...    31   1.5  
AE014296-1931|AAF50078.1|  973|Drosophila melanogaster CG6190-PA...    31   1.5  
U03559-1|AAC13746.1|  147|Drosophila melanogaster mago nashi pro...    29   6.1  
AY071060-1|AAL48682.1|  147|Drosophila melanogaster RE14116p pro...    29   6.1  
AE013599-3136|AAF46677.1|  147|Drosophila melanogaster CG9401-PA...    29   6.1  

>AY089545-1|AAL90283.1|  393|Drosophila melanogaster LD22255p
           protein.
          Length = 393

 Score =  272 bits (667), Expect = 3e-73
 Identities = 123/213 (57%), Positives = 166/213 (77%), Gaps = 2/213 (0%)
 Frame = +3

Query: 3   TTTLVALLNHGDHIVSSDDVYGGTNRLLRQVVSRLGINTTFTDFTNIEKVKNAMQENTKM 182
           TT ++ +L+ GDHI+  DDVYGGTNRL+RQV +RLGI+ TF D T ++ +K++++  TK+
Sbjct: 86  TTAVLTMLSSGDHIIMGDDVYGGTNRLIRQVATRLGISATFVDPTKLDLIKSSIKPETKL 145

Query: 183 IWIETPTNPLLKVVDIEAIVKIARS-RGDIIVVVDNTFLTPYLQKPLDFGADIVMYSLTK 359
           +WIE+PTNPL+KV DIEAI ++    R DI++ VDNTFLT Y Q+PL+ GAD+V YSLTK
Sbjct: 146 VWIESPTNPLVKVADIEAIAQLVHGVREDIVLAVDNTFLTSYFQRPLELGADLVCYSLTK 205

Query: 360 YMNGHSDVIMGAAIVNDKAIGDKLRFLQNAMGIVPSPIDCYFVNRSLKTLALRMEHHKKS 539
           YMNGH+DV+MG   +N + +   L+FLQNA+GIVPSP DCY VNRSLKTL+LRME H+K+
Sbjct: 206 YMNGHTDVVMGGITMNSEKLYKSLKFLQNAVGIVPSPFDCYQVNRSLKTLSLRMEQHQKN 265

Query: 540 SLIIANWLEKHPKIVEVLHPXLXTHP-HTXXLK 635
           +L +A +LE +P + +VLHP L +HP H   LK
Sbjct: 266 ALKVAKYLETNPFVEKVLHPSLPSHPQHKIALK 298



 Score = 28.7 bits (61), Expect = 8.0
 Identities = 14/26 (53%), Positives = 15/26 (57%)
 Frame = +2

Query: 620 HXIXKKXMTGHSGVFSFKXSGGLKES 697
           H I  K   G+SGVFSF   G LK S
Sbjct: 293 HKIALKQAYGYSGVFSFYIKGELKHS 318


>AE013599-2732|AAF57663.1|  393|Drosophila melanogaster CG5345-PA
           protein.
          Length = 393

 Score =  272 bits (667), Expect = 3e-73
 Identities = 123/213 (57%), Positives = 166/213 (77%), Gaps = 2/213 (0%)
 Frame = +3

Query: 3   TTTLVALLNHGDHIVSSDDVYGGTNRLLRQVVSRLGINTTFTDFTNIEKVKNAMQENTKM 182
           TT ++ +L+ GDHI+  DDVYGGTNRL+RQV +RLGI+ TF D T ++ +K++++  TK+
Sbjct: 86  TTAVLTMLSSGDHIIMGDDVYGGTNRLIRQVATRLGISATFVDPTKLDLIKSSIKPETKL 145

Query: 183 IWIETPTNPLLKVVDIEAIVKIARS-RGDIIVVVDNTFLTPYLQKPLDFGADIVMYSLTK 359
           +WIE+PTNPL+KV DIEAI ++    R DI++ VDNTFLT Y Q+PL+ GAD+V YSLTK
Sbjct: 146 VWIESPTNPLVKVADIEAIAQLVHGVREDIVLAVDNTFLTSYFQRPLELGADLVCYSLTK 205

Query: 360 YMNGHSDVIMGAAIVNDKAIGDKLRFLQNAMGIVPSPIDCYFVNRSLKTLALRMEHHKKS 539
           YMNGH+DV+MG   +N + +   L+FLQNA+GIVPSP DCY VNRSLKTL+LRME H+K+
Sbjct: 206 YMNGHTDVVMGGITMNSEKLYKSLKFLQNAVGIVPSPFDCYQVNRSLKTLSLRMEQHQKN 265

Query: 540 SLIIANWLEKHPKIVEVLHPXLXTHP-HTXXLK 635
           +L +A +LE +P + +VLHP L +HP H   LK
Sbjct: 266 ALKVAKYLETNPFVEKVLHPSLPSHPQHKIALK 298



 Score = 28.7 bits (61), Expect = 8.0
 Identities = 14/26 (53%), Positives = 15/26 (57%)
 Frame = +2

Query: 620 HXIXKKXMTGHSGVFSFKXSGGLKES 697
           H I  K   G+SGVFSF   G LK S
Sbjct: 293 HKIALKQAYGYSGVFSFYIKGELKHS 318


>AF095822-1|AAD17839.1|  393|Drosophila melanogaster
           ecdysteroid-inducible polypeptideEIP40 protein.
          Length = 393

 Score =  269 bits (660), Expect = 2e-72
 Identities = 122/213 (57%), Positives = 165/213 (77%), Gaps = 2/213 (0%)
 Frame = +3

Query: 3   TTTLVALLNHGDHIVSSDDVYGGTNRLLRQVVSRLGINTTFTDFTNIEKVKNAMQENTKM 182
           TT ++ +L+ GDHI+  DDVYGGTNRL+RQV +RLGI+ TF D T ++ +K++++  TK+
Sbjct: 86  TTAVLTMLSSGDHIIMGDDVYGGTNRLIRQVATRLGISATFVDPTKLDLIKSSIKPETKL 145

Query: 183 IWIETPTNPLLKVVDIEAIVKIARS-RGDIIVVVDNTFLTPYLQKPLDFGADIVMYSLTK 359
           +WIE+PTNPL+KV DIEAI ++    R DI++ VDNTFLT Y Q+PL+ GAD+V YSLTK
Sbjct: 146 VWIESPTNPLVKVADIEAIAQLVHGVREDIVLAVDNTFLTSYFQRPLELGADLVCYSLTK 205

Query: 360 YMNGHSDVIMGAAIVNDKAIGDKLRFLQNAMGIVPSPIDCYFVNRSLKTLALRMEHHKKS 539
           YMNGH+DV+MG   +N + +   L+FLQNA+ IVPSP DCY VNRSLKTL+LRME H+K+
Sbjct: 206 YMNGHTDVVMGGITMNSEKLYKSLKFLQNAVDIVPSPFDCYQVNRSLKTLSLRMEQHQKN 265

Query: 540 SLIIANWLEKHPKIVEVLHPXLXTHP-HTXXLK 635
           +L +A +LE +P + +VLHP L +HP H   LK
Sbjct: 266 ALKVAKYLETNPFVEKVLHPSLPSHPQHKIALK 298



 Score = 28.7 bits (61), Expect = 8.0
 Identities = 14/26 (53%), Positives = 15/26 (57%)
 Frame = +2

Query: 620 HXIXKKXMTGHSGVFSFKXSGGLKES 697
           H I  K   G+SGVFSF   G LK S
Sbjct: 293 HKIALKQAYGYSGVFSFYIKGELKHS 318


>BT003457-1|AAO39460.1|  985|Drosophila melanogaster RH34107p
           protein.
          Length = 985

 Score = 33.5 bits (73), Expect = 0.28
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = +3

Query: 219 VVDIEAIVKIARSRGDIIVVVDNTFLTPYLQKPLDFGADIVM 344
           V D E I  +A+  G ++VV  +      L+ P +FGADI +
Sbjct: 247 VKDFEDIAALAKKNGTLVVVATDLLSLTLLRPPAEFGADIAV 288


>AE014297-1126|AAF54512.1|  985|Drosophila melanogaster CG3999-PA
           protein.
          Length = 985

 Score = 33.5 bits (73), Expect = 0.28
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = +3

Query: 219 VVDIEAIVKIARSRGDIIVVVDNTFLTPYLQKPLDFGADIVM 344
           V D E I  +A+  G ++VV  +      L+ P +FGADI +
Sbjct: 247 VKDFEDIAALAKKNGTLVVVATDLLSLTLLRPPAEFGADIAV 288


>AY069489-1|AAL39634.1|  973|Drosophila melanogaster LD21888p
           protein.
          Length = 973

 Score = 31.1 bits (67), Expect = 1.5
 Identities = 24/73 (32%), Positives = 40/73 (54%), Gaps = 3/73 (4%)
 Frame = +3

Query: 33  GDHIVSSDDVYGGTNRLLRQVVSRLGINTTFTDF---TNIEKVKNAMQENTKMIWIETPT 203
           GD +V  + V  G + L+ Q    L +N  ++DF   TNIE+  NA ++  +M+  E+P 
Sbjct: 787 GD-VVQHELVPNGQDVLVGQHNKELFVNL-YSDFLLNTNIEQQFNAFRKGFEMVTDESPL 844

Query: 204 NPLLKVVDIEAIV 242
             L +  +IE +V
Sbjct: 845 KLLFRPEEIEMLV 857


>AE014296-1931|AAF50078.1|  973|Drosophila melanogaster CG6190-PA
           protein.
          Length = 973

 Score = 31.1 bits (67), Expect = 1.5
 Identities = 24/73 (32%), Positives = 40/73 (54%), Gaps = 3/73 (4%)
 Frame = +3

Query: 33  GDHIVSSDDVYGGTNRLLRQVVSRLGINTTFTDF---TNIEKVKNAMQENTKMIWIETPT 203
           GD +V  + V  G + L+ Q    L +N  ++DF   TNIE+  NA ++  +M+  E+P 
Sbjct: 787 GD-VVQHELVPNGQDVLVGQHNKELFVNL-YSDFLLNTNIEQQFNAFRKGFEMVTDESPL 844

Query: 204 NPLLKVVDIEAIV 242
             L +  +IE +V
Sbjct: 845 KLLFRPEEIEMLV 857


>U03559-1|AAC13746.1|  147|Drosophila melanogaster mago nashi
           protein protein.
          Length = 147

 Score = 29.1 bits (62), Expect = 6.1
 Identities = 15/53 (28%), Positives = 24/53 (45%)
 Frame = +2

Query: 320 RFRSGHRYVLANEIYEWSF*RHNGSRYCK*QSYRRQTKILAKRHGHRSVTDRL 478
           R+  GH+    +E  E+ F      RY    +Y+  T I  +   H+SV + L
Sbjct: 9   RYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEAFVHQSVMEEL 61


>AY071060-1|AAL48682.1|  147|Drosophila melanogaster RE14116p
           protein.
          Length = 147

 Score = 29.1 bits (62), Expect = 6.1
 Identities = 15/53 (28%), Positives = 24/53 (45%)
 Frame = +2

Query: 320 RFRSGHRYVLANEIYEWSF*RHNGSRYCK*QSYRRQTKILAKRHGHRSVTDRL 478
           R+  GH+    +E  E+ F      RY    +Y+  T I  +   H+SV + L
Sbjct: 9   RYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEAFVHQSVMEEL 61


>AE013599-3136|AAF46677.1|  147|Drosophila melanogaster CG9401-PA
           protein.
          Length = 147

 Score = 29.1 bits (62), Expect = 6.1
 Identities = 15/53 (28%), Positives = 24/53 (45%)
 Frame = +2

Query: 320 RFRSGHRYVLANEIYEWSF*RHNGSRYCK*QSYRRQTKILAKRHGHRSVTDRL 478
           R+  GH+    +E  E+ F      RY    +Y+  T I  +   H+SV + L
Sbjct: 9   RYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEAFVHQSVMEEL 61


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,501,315
Number of Sequences: 53049
Number of extensions: 541553
Number of successful extensions: 1360
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1313
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1357
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3067209849
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)