Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0388
         (700 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    27   0.23 
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    27   0.23 
DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex det...    27   0.23 
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          24   1.6  
L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        21   8.5  

>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 26.6 bits (56), Expect = 0.23
 Identities = 13/44 (29%), Positives = 25/44 (56%)
 Frame = +2

Query: 137 KY*KSKERHARKHQDDLDRDPNKSIIKSR*H*GDRKDREESRRH 268
           +Y +S+ER    ++++ +    +   K R    DRK+RE+S+ H
Sbjct: 38  RYSRSREREQNSYKNEREYRKYRETSKERSR--DRKEREKSKEH 79


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 26.6 bits (56), Expect = 0.23
 Identities = 13/44 (29%), Positives = 25/44 (56%)
 Frame = +2

Query: 137 KY*KSKERHARKHQDDLDRDPNKSIIKSR*H*GDRKDREESRRH 268
           +Y +S+ER    ++++ +    +   K R    DRK+RE+S+ H
Sbjct: 38  RYSRSREREQNSYKNEREYRKYRETSKERSR--DRKEREKSKEH 79


>DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 26.6 bits (56), Expect = 0.23
 Identities = 13/44 (29%), Positives = 25/44 (56%)
 Frame = +2

Query: 137 KY*KSKERHARKHQDDLDRDPNKSIIKSR*H*GDRKDREESRRH 268
           +Y +S+ER    ++++ +    +   K R    DRK+RE+S+ H
Sbjct: 38  RYSRSREREQNSYKNEREYRKYRETSKERSR--DRKEREKSKEH 79


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = +3

Query: 12  LVALLNHGDHIVSSDDVYGGTNRLLRQVVSRLGINTTFTD 131
           L AL NH   +  +   +G  +  L Q   RLGI+T   D
Sbjct: 420 LEALRNHDMSLTKASATFGIPSTTLWQRAHRLGIDTPKKD 459


>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +3

Query: 162 MQENTKMIWIETPTNPLLKVV 224
           MQEN KM W+    + LL  V
Sbjct: 238 MQENDKMSWLFESEDVLLPSV 258


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,311
Number of Sequences: 438
Number of extensions: 3625
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)