Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0388
(700 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g57050.3 68416.m06352 cystathionine beta-lyase, chloroplast /... 177 4e-45
At3g57050.2 68416.m06351 cystathionine beta-lyase, chloroplast /... 177 4e-45
At3g57050.1 68416.m06350 cystathionine beta-lyase, chloroplast /... 177 4e-45
At3g01120.1 68416.m00016 cystathionine gamma-synthase, chloropla... 147 7e-36
At1g33320.1 68414.m04121 cystathionine gamma-synthase, chloropla... 130 7e-31
At1g64660.1 68414.m07330 Cys/Met metabolism pyridoxal-phosphate-... 109 1e-24
At1g77670.1 68414.m09043 aminotransferase class I and II family ... 37 0.015
At1g28060.1 68414.m03435 small nuclear ribonucleoprotein family ... 34 0.079
At2g40650.1 68415.m05016 pre-mRNA splicing factor PRP38 family p... 32 0.42
At4g33010.1 68417.m04695 glycine dehydrogenase [decarboxylating]... 31 0.73
At5g02790.1 68418.m00221 In2-1 protein, putative similar to In2-... 29 2.2
At2g26080.1 68415.m03131 glycine dehydrogenase [decarboxylating]... 29 2.2
At1g34060.1 68414.m04222 alliinase family protein contains Pfam ... 29 2.2
At3g03340.1 68416.m00332 LUC7 N_terminus domain-containing prote... 29 3.0
At5g26190.1 68418.m03116 DC1 domain-containing protein contains ... 29 3.9
At4g36630.2 68417.m05198 expressed protein 28 5.2
At4g36630.1 68417.m05199 expressed protein 28 5.2
At2g16820.1 68415.m01928 hypothetical protein 28 5.2
At5g02780.1 68418.m00220 In2-1 protein, putative similar to In2-... 28 6.8
At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit... 28 6.8
At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit... 28 6.8
At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit... 28 6.8
At3g03200.1 68416.m00316 no apical meristem (NAM) family protein... 28 6.8
At4g24860.1 68417.m03559 AAA-type ATPase family protein contains... 27 9.0
At2g11462.1 68415.m01231 hypothetical protein 27 9.0
>At3g57050.3 68416.m06352 cystathionine beta-lyase, chloroplast /
beta-cystathionase / cysteine lyase (CBL) identical to
SP|P53780 Cystathionine beta-lyase, chloroplast
precursor (EC 4.4.1.8) (CBL) (Beta-cystathionase)
(Cysteine lyase) {Arabidopsis thaliana}
Length = 378
Score = 177 bits (432), Expect = 4e-45
Identities = 82/199 (41%), Positives = 134/199 (67%)
Frame = +3
Query: 21 LLNHGDHIVSSDDVYGGTNRLLRQVVSRLGINTTFTDFTNIEKVKNAMQENTKMIWIETP 200
L+ +G+ IV+ DDVYGG++RLL QVV R G+ + T +++V A+ TK++W+E+P
Sbjct: 167 LIKNGEEIVAGDDVYGGSDRLLSQVVPRSGVVVKRVNTTKLDEVAAAIGPQTKLVWLESP 226
Query: 201 TNPLLKVVDIEAIVKIARSRGDIIVVVDNTFLTPYLQKPLDFGADIVMYSLTKYMNGHSD 380
TNP ++ DI I ++A ++G +V+VDN+ ++P L +PL+ GADIVM+S TK++ GHSD
Sbjct: 227 TNPRQQISDIRKISEMAHAQG-ALVLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSD 285
Query: 381 VIMGAAIVNDKAIGDKLRFLQNAMGIVPSPIDCYFVNRSLKTLALRMEHHKKSSLIIANW 560
V+ G V + + ++ FLQN+ G +P DC+ R +KT+ALR+E ++++ IA +
Sbjct: 286 VMAGVLAVKGEKLAKEVYFLQNSEGSGLAPFDCWLCLRGIKTMALRIEKQQENARKIAMY 345
Query: 561 LEKHPKIVEVLHPXLXTHP 617
L HP++ +V + L HP
Sbjct: 346 LSSHPRVKKVYYAGLPDHP 364
>At3g57050.2 68416.m06351 cystathionine beta-lyase, chloroplast /
beta-cystathionase / cysteine lyase (CBL) identical to
SP|P53780 Cystathionine beta-lyase, chloroplast
precursor (EC 4.4.1.8) (CBL) (Beta-cystathionase)
(Cysteine lyase) {Arabidopsis thaliana}
Length = 449
Score = 177 bits (432), Expect = 4e-45
Identities = 82/199 (41%), Positives = 134/199 (67%)
Frame = +3
Query: 21 LLNHGDHIVSSDDVYGGTNRLLRQVVSRLGINTTFTDFTNIEKVKNAMQENTKMIWIETP 200
L+ +G+ IV+ DDVYGG++RLL QVV R G+ + T +++V A+ TK++W+E+P
Sbjct: 152 LIKNGEEIVAGDDVYGGSDRLLSQVVPRSGVVVKRVNTTKLDEVAAAIGPQTKLVWLESP 211
Query: 201 TNPLLKVVDIEAIVKIARSRGDIIVVVDNTFLTPYLQKPLDFGADIVMYSLTKYMNGHSD 380
TNP ++ DI I ++A ++G +V+VDN+ ++P L +PL+ GADIVM+S TK++ GHSD
Sbjct: 212 TNPRQQISDIRKISEMAHAQG-ALVLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSD 270
Query: 381 VIMGAAIVNDKAIGDKLRFLQNAMGIVPSPIDCYFVNRSLKTLALRMEHHKKSSLIIANW 560
V+ G V + + ++ FLQN+ G +P DC+ R +KT+ALR+E ++++ IA +
Sbjct: 271 VMAGVLAVKGEKLAKEVYFLQNSEGSGLAPFDCWLCLRGIKTMALRIEKQQENARKIAMY 330
Query: 561 LEKHPKIVEVLHPXLXTHP 617
L HP++ +V + L HP
Sbjct: 331 LSSHPRVKKVYYAGLPDHP 349
>At3g57050.1 68416.m06350 cystathionine beta-lyase, chloroplast /
beta-cystathionase / cysteine lyase (CBL) identical to
SP|P53780 Cystathionine beta-lyase, chloroplast
precursor (EC 4.4.1.8) (CBL) (Beta-cystathionase)
(Cysteine lyase) {Arabidopsis thaliana}
Length = 464
Score = 177 bits (432), Expect = 4e-45
Identities = 82/199 (41%), Positives = 134/199 (67%)
Frame = +3
Query: 21 LLNHGDHIVSSDDVYGGTNRLLRQVVSRLGINTTFTDFTNIEKVKNAMQENTKMIWIETP 200
L+ +G+ IV+ DDVYGG++RLL QVV R G+ + T +++V A+ TK++W+E+P
Sbjct: 167 LIKNGEEIVAGDDVYGGSDRLLSQVVPRSGVVVKRVNTTKLDEVAAAIGPQTKLVWLESP 226
Query: 201 TNPLLKVVDIEAIVKIARSRGDIIVVVDNTFLTPYLQKPLDFGADIVMYSLTKYMNGHSD 380
TNP ++ DI I ++A ++G +V+VDN+ ++P L +PL+ GADIVM+S TK++ GHSD
Sbjct: 227 TNPRQQISDIRKISEMAHAQG-ALVLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSD 285
Query: 381 VIMGAAIVNDKAIGDKLRFLQNAMGIVPSPIDCYFVNRSLKTLALRMEHHKKSSLIIANW 560
V+ G V + + ++ FLQN+ G +P DC+ R +KT+ALR+E ++++ IA +
Sbjct: 286 VMAGVLAVKGEKLAKEVYFLQNSEGSGLAPFDCWLCLRGIKTMALRIEKQQENARKIAMY 345
Query: 561 LEKHPKIVEVLHPXLXTHP 617
L HP++ +V + L HP
Sbjct: 346 LSSHPRVKKVYYAGLPDHP 364
>At3g01120.1 68416.m00016 cystathionine gamma-synthase, chloroplast
/ O-succinylhomoserine (Thiol)-lyase (CGS) identical to
SP|P55217 Cystathionine gamma-synthase, chloroplast
precursor (EC 4.2.99.9) (CGS) (O-succinylhomoserine
(Thiol)-lyase) {Arabidopsis thaliana}
Length = 563
Score = 147 bits (356), Expect = 7e-36
Identities = 78/206 (37%), Positives = 119/206 (57%), Gaps = 1/206 (0%)
Frame = +3
Query: 3 TTTLVALLNHGDHIVSSDDVYGGTNRLLRQVVSRLGINTTFTDFTNIEKVKNAMQE-NTK 179
T L+AL+ G HIV++ D Y T + + +LGI T D +I ++ A+ E
Sbjct: 261 TVMLLALVPAGGHIVTTTDCYRKTRIFMENFLPKLGITVTVIDPADIAGLEAAVNEFKVS 320
Query: 180 MIWIETPTNPLLKVVDIEAIVKIARSRGDIIVVVDNTFLTPYLQKPLDFGADIVMYSLTK 359
+ + E+PTNP L+ VDIE + KI RG + V +D TF TP QK L GAD+V++S TK
Sbjct: 321 LFFTESPTNPFLRCVDIELVSKICHKRGTL-VCIDGTFATPLNQKALALGADLVVHSATK 379
Query: 360 YMNGHSDVIMGAAIVNDKAIGDKLRFLQNAMGIVPSPIDCYFVNRSLKTLALRMEHHKKS 539
Y+ GH+DV+ G + K + + +R L + +G +P Y + R +KTL LR++ +
Sbjct: 380 YIGGHNDVLAGCICGSLKLVSE-IRNLHHVLGGTLNPNAAYLIIRGMKTLHLRVQQQNST 438
Query: 540 SLIIANWLEKHPKIVEVLHPXLXTHP 617
+ +A LE HPK+ V +P L +HP
Sbjct: 439 AFRMAEILEAHPKVSHVYYPGLPSHP 464
>At1g33320.1 68414.m04121 cystathionine gamma-synthase, chloroplast,
putative / O-succinylhomoserine (Thiol)-lyase, putative
strong similarity to SP|P55217 Cystathionine
gamma-synthase, chloroplast precursor (EC 4.2.99.9)
(CGS) (O-succinylhomoserine (Thiol)-lyase) {Arabidopsis
thaliana}; contains Pfam profile PF01053: Cys/Met
metabolism PLP-dependent enzyme
Length = 412
Score = 130 bits (315), Expect = 7e-31
Identities = 71/203 (34%), Positives = 112/203 (55%), Gaps = 1/203 (0%)
Frame = +3
Query: 12 LVALLNHGDHIVSSDDVYGGTNRLLRQVVSRLGINTTFTDFTNIEKVKNAMQEN-TKMIW 188
L+AL+ HIV++ D Y T + +++LGI TF D +I ++ + + + +
Sbjct: 114 LLALVPTNGHIVATKDCYKETRIFMENFLTKLGITVTFIDSDDIAGLQTLVNNHEVSLFF 173
Query: 189 IETPTNPLLKVVDIEAIVKIARSRGDIIVVVDNTFLTPYLQKPLDFGADIVMYSLTKYMN 368
E+PTNP L+ VDI+ + KI RG + V +D T TP QK L GAD+V +S TKY+
Sbjct: 174 TESPTNPFLRCVDIKLVSKICHRRGTL-VCIDATIATPINQKTLALGADLVHHSATKYIG 232
Query: 369 GHSDVIMGAAIVNDKAIGDKLRFLQNAMGIVPSPIDCYFVNRSLKTLALRMEHHKKSSLI 548
GH+D + G +I + K+R L +G +P Y + R +KT+ LR+ + +
Sbjct: 233 GHNDFLAG-SISGSMELVSKIRNLHKLLGGTLNPNAAYLLIRGMKTMHLRVRQQNSTGMK 291
Query: 549 IANWLEKHPKIVEVLHPXLXTHP 617
+A LE HPK+ V + L +HP
Sbjct: 292 MAQVLEAHPKVSRVYYLGLPSHP 314
>At1g64660.1 68414.m07330 Cys/Met metabolism
pyridoxal-phosphate-dependent enzyme family protein
similar to SP|P13254 Methionine gamma-lyase (EC
4.4.1.11) (L-methioninase) {Pseudomonas putida};
contains Pfam profile PF01053: Cys/Met metabolism
PLP-dependent enzyme
Length = 441
Score = 109 bits (263), Expect = 1e-24
Identities = 63/216 (29%), Positives = 120/216 (55%), Gaps = 5/216 (2%)
Frame = +3
Query: 3 TTTLVALLNHGDHIVSSDDVYGGTNRLLRQVVSRL-GINTTFTDFTNIEKVKNAMQEN-T 176
++ ++ L + G H+V++ +YGGT+ LL + R I T+F D T+ V NA+ E T
Sbjct: 130 SSVMLQLCSSGGHVVAASTLYGGTHALLSHFLPRTCNITTSFVDITDHGAVANAIVEGRT 189
Query: 177 KMIWIETPTNPLLKVVDIEAIVKIARSRGDIIVVVDNTFLTPYLQKPLDFGADIVMYSLT 356
++++ E+ NP L V DI + ++A +G + VVVDNTF P + P GAD+V++S++
Sbjct: 190 QVLYFESVANPTLTVADIPELSRMAHEKG-VTVVVDNTF-APMVLSPAKLGADVVVHSIS 247
Query: 357 KYMNGHSDVIMGAAIVNDKAIGDKLRFLQNAMGIVPSPID---CYFVNRSLKTLALRMEH 527
K+++G +D+I GA ++ + + + ++ ++ ++ + ++ + L LRM
Sbjct: 248 KFISGGADIIAGAVCGSENLVKEMMDLRGGSLMLLGPTMNAKVAFELSERIPHLGLRMRE 307
Query: 528 HKKSSLIIANWLEKHPKIVEVLHPXLXTHPHTXXLK 635
H + + A + ++V++P L THP K
Sbjct: 308 HSHRAQVYAERMRDLG--MKVIYPGLETHPQHKLFK 341
>At1g77670.1 68414.m09043 aminotransferase class I and II family
protein similar to kynurenine aminotransferase
/glutamine transaminase K GI:1030066 [Rattus norvegicus]
Length = 440
Score = 36.7 bits (81), Expect = 0.015
Identities = 26/98 (26%), Positives = 46/98 (46%), Gaps = 4/98 (4%)
Frame = +3
Query: 12 LVALLNHGDHIVSSDDVYGGTNRLLRQVVSRL-GINTTFTDFT-NIEKVKNAMQENTKMI 185
++ L+N GD ++ Y L +++ GI DF+ +E++K A+ T+ I
Sbjct: 157 MLGLINPGDEVILFAPFYDSYEATLSMAGAKVKGITLRPPDFSIPLEELKAAVTNKTRAI 216
Query: 186 WIETPTNPLLKVVDIEAIVKIAR--SRGDIIVVVDNTF 293
+ TP NP K+ E + IA D++V D +
Sbjct: 217 LMNTPHNPTGKMFTREELETIASLCIENDVLVFSDEVY 254
>At1g28060.1 68414.m03435 small nuclear ribonucleoprotein family
protein / snRNP family protein contains similarity to
U4/U6 small nuclear ribonucleoprotein hPrp3 [Homo
sapiens] gi|2708307|gb|AAC51926
Length = 786
Score = 34.3 bits (75), Expect = 0.079
Identities = 21/50 (42%), Positives = 30/50 (60%), Gaps = 5/50 (10%)
Frame = +2
Query: 152 KERHARKHQDDLDRDPNKSIIKSR*H*GDRKDRE-ESRR----HYRCCRQ 286
KER++R H+DD DRD + R G R+DR+ +S+R HYR R+
Sbjct: 3 KERYSRSHRDDRDRDSSPDHSPQR-EGGRRRDRDVDSKRRDSDHYRSSRR 51
>At2g40650.1 68415.m05016 pre-mRNA splicing factor PRP38 family
protein contains Pfam profile PF03371: PRP38 family
Length = 355
Score = 31.9 bits (69), Expect = 0.42
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Frame = +2
Query: 146 KSKERHARKHQD---DLDRDPNKSIIKSR*H*GDRKDREESRRHYR 274
+ RH + D D+DRD ++ + R H DR DRE R HYR
Sbjct: 227 RDSHRHRDRDYDRDYDMDRDHDRDYERERGHGRDR-DRERDRDHYR 271
>At4g33010.1 68417.m04695 glycine dehydrogenase [decarboxylating],
putative / glycine decarboxylase, putative / glycine
cleavage system P-protein, putative strong similarity to
SP|P49361 Glycine dehydrogenase [decarboxylating] A,
mitochondrial precursor (EC 1.4.4.2) {Flaveria
pringlei}; contains Pfam profile PF02347: Glycine
cleavage system P-protein
Length = 1037
Score = 31.1 bits (67), Expect = 0.73
Identities = 16/49 (32%), Positives = 27/49 (55%)
Frame = +3
Query: 216 KVVDIEAIVKIARSRGDIIVVVDNTFLTPYLQKPLDFGADIVMYSLTKY 362
+V+D VK A + G +V+ + L+ P +FGADIV+ S ++
Sbjct: 292 EVLDYAEFVKNAHANGVKVVMATDLLALTVLKPPGEFGADIVVGSAQRF 340
>At5g02790.1 68418.m00221 In2-1 protein, putative similar to In2-1,
Zea mays, EMBL:X58573
Length = 235
Score = 29.5 bits (63), Expect = 2.2
Identities = 29/106 (27%), Positives = 45/106 (42%), Gaps = 7/106 (6%)
Frame = +3
Query: 60 VYGGTNRLLRQVVSRLGINTTFT-DFTNI-EKVKNA-MQENTKMIWIETPTNPLLKVVDI 230
++ GT RL V T +F + EK+K + + W + P KV +
Sbjct: 24 LFDGTTRLYTSYVCPFAQRVWITRNFKGLQEKIKLVPLDLGNRPAWYKEKVYPENKVPAL 83
Query: 231 EAIVKIARSRGDIIVVVDNTFLTPYL----QKPLDFGADIVMYSLT 356
E KI D+I +DNTF P L +FG +++ Y+ T
Sbjct: 84 EHNGKIIGESLDLIKYLDNTFEGPSLYPEDHAKREFGDELLKYTDT 129
>At2g26080.1 68415.m03131 glycine dehydrogenase [decarboxylating],
putative / glycine decarboxylase, putative / glycine
cleavage system P-protein, putative strong similarity to
SP|P26969 Glycine dehydrogenase [decarboxylating],
mitochondrial precursor (EC 1.4.4.2) {Pisum sativum};
contains Pfam profile PF02347: Glycine cleavage system
P-protein
Length = 1044
Score = 29.5 bits (63), Expect = 2.2
Identities = 16/45 (35%), Positives = 25/45 (55%)
Frame = +3
Query: 216 KVVDIEAIVKIARSRGDIIVVVDNTFLTPYLQKPLDFGADIVMYS 350
+V+D VK A + G +V+ + L+ P +FGADIV+ S
Sbjct: 298 EVLDYGEFVKNAHANGVKVVMATDLLALTMLKPPGEFGADIVVGS 342
>At1g34060.1 68414.m04222 alliinase family protein contains Pfam
profiles: PF04864 allinase C-terminal domain, PF04863
alliinase EGF-like domain
Length = 463
Score = 29.5 bits (63), Expect = 2.2
Identities = 17/44 (38%), Positives = 29/44 (65%), Gaps = 2/44 (4%)
Frame = +3
Query: 333 DIVMYSLTKYMNGHSDVIMGAAIVNDKAIGDKL-RFLQ-NAMGI 458
D+ ++SL+K GH+ G +V DKAI +K+ RF++ +MG+
Sbjct: 277 DLSLFSLSK-TTGHAGSRFGWGLVKDKAIYEKMDRFIRLTSMGV 319
>At3g03340.1 68416.m00332 LUC7 N_terminus domain-containing protein
contains Pfam domain PF03194: LUC7 N_terminus
Length = 402
Score = 29.1 bits (62), Expect = 3.0
Identities = 12/43 (27%), Positives = 23/43 (53%)
Frame = +2
Query: 146 KSKERHARKHQDDLDRDPNKSIIKSR*H*GDRKDREESRRHYR 274
+SKER++++ + DR+ + + DR+ R+ R H R
Sbjct: 319 RSKERNSKERESSKDREKEQETSREHRRDYDRRSRDRDRHHDR 361
>At5g26190.1 68418.m03116 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 556
Score = 28.7 bits (61), Expect = 3.9
Identities = 18/78 (23%), Positives = 31/78 (39%)
Frame = +2
Query: 272 RCCRQYLLDAVFTKAFRFRSGHRYVLANEIYEWSF*RHNGSRYCK*QSYRRQTKILAKRH 451
+CC +D V K+ R GH ++L + ++ H +C S R + + K
Sbjct: 471 KCCSTLHIDCVLGKSPYMRPGHSFLLCSREFQVVSNNHTSRPFCTICSLRCKDAFVLK-- 528
Query: 452 GHRSVTDRLLFCEQELKD 505
+ TD C + D
Sbjct: 529 -SKDETDTSCLCSLKCLD 545
>At4g36630.2 68417.m05198 expressed protein
Length = 950
Score = 28.3 bits (60), Expect = 5.2
Identities = 14/45 (31%), Positives = 27/45 (60%)
Frame = +3
Query: 207 PLLKVVDIEAIVKIARSRGDIIVVVDNTFLTPYLQKPLDFGADIV 341
PL++ + ++ I ++ +S +IV +DN+ Y+ P+ GA IV
Sbjct: 262 PLIQTIVLQNIRRLVKSNNAVIVGLDNSV---YVLFPVSIGAQIV 303
>At4g36630.1 68417.m05199 expressed protein
Length = 519
Score = 28.3 bits (60), Expect = 5.2
Identities = 14/45 (31%), Positives = 27/45 (60%)
Frame = +3
Query: 207 PLLKVVDIEAIVKIARSRGDIIVVVDNTFLTPYLQKPLDFGADIV 341
PL++ + ++ I ++ +S +IV +DN+ Y+ P+ GA IV
Sbjct: 262 PLIQTIVLQNIRRLVKSNNAVIVGLDNSV---YVLFPVSIGAQIV 303
>At2g16820.1 68415.m01928 hypothetical protein
Length = 201
Score = 28.3 bits (60), Expect = 5.2
Identities = 18/49 (36%), Positives = 23/49 (46%)
Frame = +3
Query: 174 TKMIWIETPTNPLLKVVDIEAIVKIARSRGDIIVVVDNTFLTPYLQKPL 320
T +W E P+ LL VV + A + I I V +N LTP PL
Sbjct: 100 TMDLWGEVPSILLLMVVKVVAKIMITTKEHGIGNVEENVILTPGEFSPL 148
>At5g02780.1 68418.m00220 In2-1 protein, putative similar to In2-1
[Zea mays] EMBL:X58573
Length = 237
Score = 27.9 bits (59), Expect = 6.8
Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
Frame = +3
Query: 186 WIETPTNPLLKVVDIEAIVKIARSRGDIIVVVDNTF----LTPYLQKPLDFGADIVMY 347
W++ NP KV +E KI D+I VD+ F L P +FG +++ Y
Sbjct: 71 WLKEKVNPANKVPALEHNGKITGESLDLIKYVDSNFDGPSLYPEDSAKREFGEELLKY 128
>At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 565
Score = 27.9 bits (59), Expect = 6.8
Identities = 17/46 (36%), Positives = 23/46 (50%)
Frame = +2
Query: 146 KSKERHARKHQDDLDRDPNKSIIKSR*H*GDRKDREESRRHYRCCR 283
K +ER + + DRD KS +SR KDR+ RH+R R
Sbjct: 62 KDRERDSEVSRRSRDRDGEKSKERSR-----DKDRDHRERHHRSSR 102
>At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 542
Score = 27.9 bits (59), Expect = 6.8
Identities = 17/46 (36%), Positives = 23/46 (50%)
Frame = +2
Query: 146 KSKERHARKHQDDLDRDPNKSIIKSR*H*GDRKDREESRRHYRCCR 283
K +ER + + DRD KS +SR KDR+ RH+R R
Sbjct: 62 KDRERDSEVSRRSRDRDGEKSKERSR-----DKDRDHRERHHRSSR 102
>At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 573
Score = 27.9 bits (59), Expect = 6.8
Identities = 17/46 (36%), Positives = 23/46 (50%)
Frame = +2
Query: 146 KSKERHARKHQDDLDRDPNKSIIKSR*H*GDRKDREESRRHYRCCR 283
K +ER + + DRD KS +SR KDR+ RH+R R
Sbjct: 62 KDRERDSEVSRRSRDRDGEKSKERSR-----DKDRDHRERHHRSSR 102
>At3g03200.1 68416.m00316 no apical meristem (NAM) family protein
similar to NAC2 (GI:6456751) {Arabidopsis thaliana}
Length = 479
Score = 27.9 bits (59), Expect = 6.8
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +2
Query: 110 NQHYIYGLYKY*KSKERHARKHQDDLDRDP 199
NQ+YIY K KE+ R D+ D DP
Sbjct: 314 NQNYIYAFEKTGYIKEQKIRSSLDNTDEDP 343
>At4g24860.1 68417.m03559 AAA-type ATPase family protein contains
Pfam profile PF00004: ATPase, AAA family
Length = 1122
Score = 27.5 bits (58), Expect = 9.0
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +3
Query: 78 RLLRQVVSRLGINTTFTDFTNIEKVKNAMQE 170
RLL V+ I+ TF D +EKVK+ ++E
Sbjct: 804 RLLSDVILPSDIDVTFDDIGALEKVKDILKE 834
>At2g11462.1 68415.m01231 hypothetical protein
Length = 144
Score = 27.5 bits (58), Expect = 9.0
Identities = 16/38 (42%), Positives = 20/38 (52%)
Frame = +3
Query: 483 FVNRSLKTLALRMEHHKKSSLIIANWLEKHPKIVEVLH 596
F+ SLK A ME K+S NWL+ +IVE H
Sbjct: 100 FLEESLKRKAALMEKGKQSGDEKKNWLKHWTRIVEDGH 137
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,752,348
Number of Sequences: 28952
Number of extensions: 262009
Number of successful extensions: 748
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 714
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 738
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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