Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0387
         (739 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55686| Best HMM Match : Ribosomal_S7 (HMM E-Value=0)               344   5e-95
SB_14427| Best HMM Match : Cadherin (HMM E-Value=0)                    29   5.2  
SB_18806| Best HMM Match : RVT_1 (HMM E-Value=1.7e-14)                 28   6.9  
SB_36821| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.9  

>SB_55686| Best HMM Match : Ribosomal_S7 (HMM E-Value=0)
          Length = 272

 Score =  344 bits (845), Expect = 5e-95
 Identities = 163/196 (83%), Positives = 180/196 (91%)
 Frame = +1

Query: 67  VVVETMSLPQAADIPEIKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLPHSAGRYAHKR 246
           VV +  +   A ++P+IKLFG+WS  DVQVSD+SL DYI+VKEKY+ YLPH+AGRYA KR
Sbjct: 69  VVDDDAAAVVAPEVPDIKLFGKWSTEDVQVSDISLTDYIAVKEKYSTYLPHTAGRYAAKR 128

Query: 247 FRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVTAIINSG 426
           FRKAQCPIVER+TNS+MMHGRNNGKKLM VRI+KH+FEIIHLLTGENPLQVLV AIINSG
Sbjct: 129 FRKAQCPIVERITNSMMMHGRNNGKKLMTVRIIKHSFEIIHLLTGENPLQVLVNAIINSG 188

Query: 427 PREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFXNIKTIAECVADELINA 606
           PREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGARE+AF NIK+IAEC+ADELINA
Sbjct: 189 PREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGARESAFRNIKSIAECLADELINA 248

Query: 607 AXGSSNSYAIKKKDEL 654
           A GSSNSYAIKKKDEL
Sbjct: 249 AKGSSNSYAIKKKDEL 264



 Score = 42.3 bits (95), Expect = 4e-04
 Identities = 19/35 (54%), Positives = 26/35 (74%)
 Frame = +1

Query: 67  VVVETMSLPQAADIPEIKLFGRWSCYDVQVSDMSL 171
           VV +  +   A ++P+IKLFG+WS  DVQVSD+SL
Sbjct: 6   VVDDDAAAVVAPEVPDIKLFGKWSTEDVQVSDISL 40


>SB_14427| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 2325

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -2

Query: 606  CIN*FICNTLCDCFNIXECSLTCTC 532
            C+N  +C+    C  +   SLTCTC
Sbjct: 2164 CVNETVCDGNATCARVKGTSLTCTC 2188


>SB_18806| Best HMM Match : RVT_1 (HMM E-Value=1.7e-14)
          Length = 556

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = +1

Query: 106 IPEIKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLPHSAGRYA 237
           IPE  L     C DV   +  LQ+++ + +KY  YL + A +Y+
Sbjct: 511 IPEEAL--NLECPDVDFRESVLQEFLLLDKKYESYLEYLALKYS 552


>SB_36821| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1503

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 17/59 (28%), Positives = 25/59 (42%)
 Frame = +2

Query: 17  QSWPRRTGMTTXPRQAAWLWKPCLYHKPPTFLKLSFSADGVATMCKSLICLCRTTFPLK 193
           ++WP  T + T   +A W W    Y    TFL +S         C  ++   R T+P K
Sbjct: 706 EAWPEPTPLITSALRADWTWLGRRYGLATTFLIISL-------WCLFILAKDRRTYPRK 757


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,735,019
Number of Sequences: 59808
Number of extensions: 476288
Number of successful extensions: 1222
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1221
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1986074805
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)