Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0387
         (739 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g37270.1 68415.m04572 40S ribosomal protein S5 (RPS5A) identi...   299   2e-81
At3g11940.2 68416.m01470 40S ribosomal protein S5 (RPS5B) simila...   296   9e-81
At3g11940.1 68416.m01469 40S ribosomal protein S5 (RPS5B) simila...   296   9e-81
At4g39450.1 68417.m05582 expressed protein                             30   1.8  
At1g27180.1 68414.m03311 disease resistance protein (TIR-NBS-LRR...    29   4.3  
At4g38530.1 68417.m05454 phosphoinositide-specific phospholipase...    28   7.4  
At5g01940.1 68418.m00113 eukaryotic translation initiation facto...    27   9.8  
At1g79490.1 68414.m09264 pentatricopeptide (PPR) repeat-containi...    27   9.8  

>At2g37270.1 68415.m04572 40S ribosomal protein S5 (RPS5A) identical
           to GP:3043428
          Length = 207

 Score =  299 bits (733), Expect = 2e-81
 Identities = 144/182 (79%), Positives = 163/182 (89%), Gaps = 1/182 (0%)
 Frame = +1

Query: 112 EIKLFGRWSCYDVQVSDMSLQDYISVK-EKYAKYLPHSAGRYAHKRFRKAQCPIVERLTN 288
           E+KLF RWS  DV V+D+SL DYI V+  K+A ++PH+AGRY+ KRFRKAQCPIVERLTN
Sbjct: 18  EVKLFNRWSFDDVSVTDISLVDYIGVQPSKHATFVPHTAGRYSVKRFRKAQCPIVERLTN 77

Query: 289 SLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVTAIINSGPREDSTRIGRAGTV 468
           SLMMHGRNNGKKLMAVRIVKHA EIIHLL+  NP+QV++ AI+NSGPRED+TRIG AG V
Sbjct: 78  SLMMHGRNNGKKLMAVRIVKHAMEIIHLLSDLNPIQVIIDAIVNSGPREDATRIGSAGVV 137

Query: 469 RRQAVDVSPLRRVNQAIWLLCTGAREAAFXNIKTIAECVADELINAAXGSSNSYAIKKKD 648
           RRQAVD+SPLRRVNQAI+LL TGAREAAF NIKTIAEC+ADELINAA GSSNSYAIKKKD
Sbjct: 138 RRQAVDISPLRRVNQAIFLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKD 197

Query: 649 EL 654
           E+
Sbjct: 198 EI 199


>At3g11940.2 68416.m01470 40S ribosomal protein S5 (RPS5B) similar
           to 40S ribosomal protein S5 GB:AAC98068 GI:4056502 from
           [Arabidopsis thaliana]
          Length = 207

 Score =  296 bits (727), Expect = 9e-81
 Identities = 144/188 (76%), Positives = 165/188 (87%), Gaps = 1/188 (0%)
 Frame = +1

Query: 94  QAADIPEIKLFGRWSCYDVQVSDMSLQDYISVKE-KYAKYLPHSAGRYAHKRFRKAQCPI 270
           Q A   E+KLF RW+  DV V+D+SL DYI V+  K+A ++PH+AGRY+ KRFRKAQCPI
Sbjct: 12  QQALTNEVKLFNRWTYDDVTVTDISLVDYIGVQAAKHATFVPHTAGRYSVKRFRKAQCPI 71

Query: 271 VERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVTAIINSGPREDSTRI 450
           VERLTNSLMMHGRNNGKKLMAVRIVKHA EIIHLL+  NP+QV++ AI+NSGPRED+TRI
Sbjct: 72  VERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLSDLNPIQVIIDAIVNSGPREDATRI 131

Query: 451 GRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFXNIKTIAECVADELINAAXGSSNSY 630
           G AG VRRQAVD+SPLRRVNQAI+L+ TGAREAAF NIKTIAEC+ADELINAA GSSNSY
Sbjct: 132 GSAGVVRRQAVDISPLRRVNQAIFLITTGAREAAFRNIKTIAECLADELINAAKGSSNSY 191

Query: 631 AIKKKDEL 654
           AIKKKDE+
Sbjct: 192 AIKKKDEI 199


>At3g11940.1 68416.m01469 40S ribosomal protein S5 (RPS5B) similar
           to 40S ribosomal protein S5 GB:AAC98068 GI:4056502 from
           [Arabidopsis thaliana]
          Length = 207

 Score =  296 bits (727), Expect = 9e-81
 Identities = 144/188 (76%), Positives = 165/188 (87%), Gaps = 1/188 (0%)
 Frame = +1

Query: 94  QAADIPEIKLFGRWSCYDVQVSDMSLQDYISVKE-KYAKYLPHSAGRYAHKRFRKAQCPI 270
           Q A   E+KLF RW+  DV V+D+SL DYI V+  K+A ++PH+AGRY+ KRFRKAQCPI
Sbjct: 12  QQALTNEVKLFNRWTYDDVTVTDISLVDYIGVQAAKHATFVPHTAGRYSVKRFRKAQCPI 71

Query: 271 VERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVTAIINSGPREDSTRI 450
           VERLTNSLMMHGRNNGKKLMAVRIVKHA EIIHLL+  NP+QV++ AI+NSGPRED+TRI
Sbjct: 72  VERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLSDLNPIQVIIDAIVNSGPREDATRI 131

Query: 451 GRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFXNIKTIAECVADELINAAXGSSNSY 630
           G AG VRRQAVD+SPLRRVNQAI+L+ TGAREAAF NIKTIAEC+ADELINAA GSSNSY
Sbjct: 132 GSAGVVRRQAVDISPLRRVNQAIFLITTGAREAAFRNIKTIAECLADELINAAKGSSNSY 191

Query: 631 AIKKKDEL 654
           AIKKKDE+
Sbjct: 192 AIKKKDEI 199


>At4g39450.1 68417.m05582 expressed protein
          Length = 1553

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 21/48 (43%), Positives = 26/48 (54%)
 Frame = +1

Query: 484 DVSPLRRVNQAIWLLCTGAREAAFXNIKTIAECVADELINAAXGSSNS 627
           DVSPL  +   IWL  T ARE +   +  I   +A E I AA  S+NS
Sbjct: 411 DVSPLSCLT--IWLEITAARETSSIKVNDITTKIA-ENIGAAVVSTNS 455


>At1g27180.1 68414.m03311 disease resistance protein (TIR-NBS-LRR
            class), putative domain signature TIR-NBS-LRR exists,
            suggestive of a disease resistance protein.
          Length = 1556

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 2/82 (2%)
 Frame = +2

Query: 53   PRQAAWL-WKPC-LYHKPPTFLKLSFSADGVATMCKSLICLCRTTFPLKRSTQNIYLIQL 226
            P +  W+ WK   L + PP  L       GV  + +S +   +T  P KR  +N+ ++ L
Sbjct: 795  PSELKWIQWKGFPLENLPPDILSRQL---GVLDLSESGVRRVKT-LPRKRGDENLKVVNL 850

Query: 227  AGMHTSVSVKPSAQSWSALQTL 292
             G H  +   P   + +AL+ L
Sbjct: 851  RGCH-GLEAIPDLSNHNALEKL 871


>At4g38530.1 68417.m05454 phosphoinositide-specific phospholipase C
           nearly identical to phosphoinositide-specific
           phospholipase C GI:557880 from [Arabidopsis thaliana];
           contains Pfam profile: PF00388
           phosphatidylinositol-specific phospholipase C
          Length = 526

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = +2

Query: 614 VHLTPTPSKRRTSWXRVA 667
           VH T TP+ + TSW RVA
Sbjct: 223 VHTTRTPTVKETSWNRVA 240


>At5g01940.1 68418.m00113 eukaryotic translation initiation factor
           2B family protein / eIF-2B family protein similar to
           SP|P41035 Eukaryotic translation initiation factor 2
           subunit (eIF-2-beta) {Oryctolagus cuniculus}; contains
           Pfam profile PF01873: Domain found in IF2B/IF5
          Length = 231

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +2

Query: 128 ADGVATMCKSLICLCRTTFPLKRSTQNIYLIQLAGMHTSVSV 253
           A+G  T+C +   LCRT   + R   ++    LA M T VS+
Sbjct: 109 AEGTITVCLNFADLCRT---MHRKPDHVMKFLLAQMETKVSL 147


>At1g79490.1 68414.m09264 pentatricopeptide (PPR) repeat-containing
           protein low similarity to fertility restorer [Petunia x
           hybrida] GI:22128587; contains Pfam profile PF01535: PPR
           repeat
          Length = 836

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 22/89 (24%), Positives = 39/89 (43%)
 Frame = +1

Query: 160 DMSLQDYISVKEKYAKYLPHSAGRYAHKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVR 339
           D+S   Y  V +  AK           K+ +++ C I  +  N+LMM   N G    A  
Sbjct: 240 DLSFNAYNQVIQYLAKAEKLEVAFCCFKKAQESGCKIDTQTYNNLMMLFLNKGLPYKAFE 299

Query: 340 IVKHAFEIIHLLTGENPLQVLVTAIINSG 426
           I +   +   LL G +  ++++ ++  SG
Sbjct: 300 IYESMEKTDSLLDG-STYELIIPSLAKSG 327


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,502,875
Number of Sequences: 28952
Number of extensions: 317461
Number of successful extensions: 736
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 727
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 733
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1624036432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)