Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0384
         (750 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0451 - 25323178-25323241,25323614-25323741,25324533-253246...    34   0.14 
07_01_1199 + 11391638-11391718,11393477-11393590,11393690-113938...    32   0.56 
12_01_0991 - 10057736-10058249,10058412-10059241,10059266-100606...    29   3.0  
05_04_0174 - 18728199-18731411                                         29   5.2  
02_01_0460 + 3323236-3323950,3325087-3326025,3326104-3326723           29   5.2  
07_03_0249 - 15816515-15816868,15817749-15817958,15818051-158182...    28   6.9  
10_05_0074 - 8865884-8866567,8866612-8866923                           28   9.1  
06_03_0551 - 22027441-22028224,22029015-22029344,22029510-220297...    28   9.1  

>04_04_0451 -
           25323178-25323241,25323614-25323741,25324533-25324634,
           25325314-25325382,25325489-25325557,25325646-25325720,
           25325805-25325909,25326394-25326492,25326626-25328344,
           25328629-25328931,25329031-25329129,25329733-25329850,
           25329933-25330018,25330091-25330159,25330232-25330306,
           25330675-25330772,25331271-25331432,25332391-25332556,
           25332902-25332970,25333064-25333126,25333221-25333376,
           25334027-25334365
          Length = 1410

 Score = 33.9 bits (74), Expect = 0.14
 Identities = 22/62 (35%), Positives = 35/62 (56%)
 Frame = -3

Query: 544 GLSCLGLGTRTHISSPQTNS*LSDSEYSSNTLMKASE*SLIFGFSCRCSASILSILADRL 365
           G S LG GT   ++  +T +  SDS +SSNTL + S+   +   S R   S+L+   +++
Sbjct: 534 GTSALGYGTSAIVAMDKTAAISSDSSFSSNTL-RLSQSKTVGRSSERSLESVLNSSKEKV 592

Query: 364 SA 359
           SA
Sbjct: 593 SA 594


>07_01_1199 +
           11391638-11391718,11393477-11393590,11393690-11393826,
           11393905-11394064
          Length = 163

 Score = 31.9 bits (69), Expect = 0.56
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = +1

Query: 97  IYRNRGIQFSWFSYKVTMTCRTKCHRRLTMSWSDRNSQMNQTF 225
           +Y   GIQF     K+   CR+KCH+   M  + R  +  + +
Sbjct: 13  VYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAY 55


>12_01_0991 - 10057736-10058249,10058412-10059241,10059266-10060633,
            10061785-10062327,10066274-10066498,10066590-10066640
          Length = 1176

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 26/100 (26%), Positives = 45/100 (45%)
 Frame = +3

Query: 54   FTMRWYNGSIAEAVNLSKQRNTIFVVFIQGDNDLSDEMSSTLNDVVVRSKLSNESNFLAV 233
            F+    NG I E +   KQ  ++ +      N+LS E+ S++ D+     ++   N L+ 
Sbjct: 1009 FSWNLINGEIPETIGQLKQLESLDL----SHNELSGEIPSSMQDLNALGTMNLSYNNLSG 1064

Query: 234  NLKSGSTNYTHFAQIYQIVPVPSLFFIGRNGTPLEVVCAG 353
             +  G+T  ++ A  Y       +  IG  G PL   C+G
Sbjct: 1065 RIPRGNTMGSYDASSY-------IGNIGLCGPPLTRNCSG 1097


>05_04_0174 - 18728199-18731411
          Length = 1070

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +2

Query: 665 RNRKQVGTHQATDRSETQRERGEKRRSS 748
           R R    T + TDR  T+RE+GE  R S
Sbjct: 180 RERDAASTRRLTDRKTTKREQGELARRS 207


>02_01_0460 + 3323236-3323950,3325087-3326025,3326104-3326723
          Length = 757

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = +3

Query: 144 DNDLSDEMSSTLNDVVVRSKLSNESNFLAVNLKSGSTNYTHFAQI 278
           +N LS E+ S L ++     L+   NFL  N+ +G  N TH   +
Sbjct: 582 NNSLSGEIPSELTNLRGIQSLNISRNFLQGNIPNGIGNLTHLESL 626


>07_03_0249 -
           15816515-15816868,15817749-15817958,15818051-15818245,
           15818318-15818393,15819982-15820021,15820155-15820283,
           15820363-15820405
          Length = 348

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = +2

Query: 638 EAFGDGDLDRNRKQVGTHQATDRSETQRERGEKRRSS 748
           E  GD D DR+R     ++  +RS   R+RG + RSS
Sbjct: 272 EKSGDRDYDRDR-YYDRNRGRERSHDHRDRGSEYRSS 307


>10_05_0074 - 8865884-8866567,8866612-8866923
          Length = 331

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 12/45 (26%), Positives = 23/45 (51%)
 Frame = +1

Query: 319 GMVLLSKWSALVWTPTICPRGSIGY*QNIGKKIRRLMIIQMPSSK 453
           G V LS W   +++ T C  G   + +++G+ +    I   PS++
Sbjct: 190 GAVSLSAWFGTIYSRTACFAGLAHFVRSMGRGVEAAQIAPSPSAR 234


>06_03_0551 -
           22027441-22028224,22029015-22029344,22029510-22029778,
           22030530-22031453,22037761-22038360,22040049-22040267
          Length = 1041

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 12/24 (50%), Positives = 18/24 (75%)
 Frame = -1

Query: 435 NDH*SSDFLADVLLVSYRSSRTDC 364
           +D  SSD LAD++LVS + S++ C
Sbjct: 641 DDRRSSDHLADLVLVSVKDSKSRC 664


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,423,666
Number of Sequences: 37544
Number of extensions: 345569
Number of successful extensions: 938
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 904
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 938
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)