Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0384
         (750 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49934| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.3  
SB_2764| Best HMM Match : Phytochelatin (HMM E-Value=0)                30   1.7  
SB_31531| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.3  
SB_8161| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   2.3  
SB_10170| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.3  
SB_26361| Best HMM Match : fn3 (HMM E-Value=0)                         29   4.0  
SB_6010| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.0  
SB_34497| Best HMM Match : NHL (HMM E-Value=0.039)                     28   7.0  
SB_8210| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.0  
SB_33458| Best HMM Match : HEAT (HMM E-Value=7.9e-15)                  28   9.3  
SB_13681| Best HMM Match : Guanylate_cyc (HMM E-Value=2.8e-27)         28   9.3  
SB_11187| Best HMM Match : F5_F8_type_C (HMM E-Value=3.7e-10)          28   9.3  
SB_32707| Best HMM Match : Peptidase_A17 (HMM E-Value=4.8e-22)         28   9.3  

>SB_49934| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 221

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 16/45 (35%), Positives = 25/45 (55%)
 Frame = +3

Query: 348 AGVDADNLSARIDRILAEHRQENPKINDHSDAFIKVLDEYSESDN 482
           +G D D+LS+R D      R+E  K++ H+D      D+ S+S N
Sbjct: 167 SGNDVDDLSSRNDVDDRSSRKEADKVSSHNDDLSSRKDDESDSGN 211


>SB_2764| Best HMM Match : Phytochelatin (HMM E-Value=0)
          Length = 413

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
 Frame = -3

Query: 280 YICAKCV*LVDPL--FRLTARKFD--SFESFDLTTTSLSVDDISSDKSLSPCMKTTKIVF 113
           Y  +KCV L+D    F+L  +  D  S ES+   T SL+ ++ +   SLS C KT   + 
Sbjct: 156 YRSSKCVSLMDTFYCFKLPEKLVDYRSKESYHRLTRSLAHENAAPFLSLSSCYKTQSELT 215

Query: 112 LC 107
            C
Sbjct: 216 YC 217


>SB_31531| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 287

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 13/36 (36%), Positives = 24/36 (66%), Gaps = 2/36 (5%)
 Frame = +2

Query: 647 GDGDLDRNRKQV--GTHQATDRSETQRERGEKRRSS 748
           G G +++NRK++    HQ T R++ +  RGE+ R++
Sbjct: 99  GMGSVEKNRKRLYEKCHQETPRTQEKARRGERERTT 134


>SB_8161| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 485

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +3

Query: 414 NPKINDHSDAFIKVLDEYSESDNYELVCGDEIC 512
           N  I+D + AF  V   Y  S+N  + C  ++C
Sbjct: 255 NTNIHDETGAFYGVSSTYESSENMTITCSTKVC 287


>SB_10170| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 47

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +3

Query: 414 NPKINDHSDAFIKVLDEYSESDNYELVCGDEIC 512
           N  I+D + AF  V   Y  S+N  + C  ++C
Sbjct: 4   NTNIHDETGAFYGVSSTYESSENMTITCSTKVC 36


>SB_26361| Best HMM Match : fn3 (HMM E-Value=0)
          Length = 1898

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 11/45 (24%), Positives = 26/45 (57%)
 Frame = +3

Query: 129  VFIQGDNDLSDEMSSTLNDVVVRSKLSNESNFLAVNLKSGSTNYT 263
            + +Q    L DE+  T+    ++ + +++SN+L ++L +   +YT
Sbjct: 1065 LLVQWSAPLPDEVGGTMQGFKLKYRKASDSNYLQISLGASQRSYT 1109


>SB_6010| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2202

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 11/38 (28%), Positives = 18/38 (47%)
 Frame = +3

Query: 426  NDHSDAFIKVLDEYSESDNYELVCGDEICVRVPRPKHD 539
            +DH     ++L++Y        V GD +C R+P    D
Sbjct: 1861 DDHFTGKFRLLEDYCRGRQISFVQGDLVCARIPHGHSD 1898


>SB_34497| Best HMM Match : NHL (HMM E-Value=0.039)
          Length = 177

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = +3

Query: 312 IGRNGTPLEV-VCAGVDADNLSARIDRILAEHRQENPKINDHSDAFIKVLDEYSE 473
           +G  G+P ++ V AG+D D LSA +  ++         I++H + +    D Y +
Sbjct: 113 VGNTGSPFDLQVTAGIDCDKLSAPVMSLIP--TDPGQPIDEHFEPWGVATDPYGQ 165


>SB_8210| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1935

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -1

Query: 408 ADVLLVSYRSSRTDCRRPHQRRPLREEYHSCR 313
           ADV+L  +      C +PHQ+  + E + SC+
Sbjct: 592 ADVILEGWLQEAGRCLQPHQKSAVLEAFKSCQ 623


>SB_33458| Best HMM Match : HEAT (HMM E-Value=7.9e-15)
          Length = 875

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = -2

Query: 185 IVKRR*HFVRQVIVTLYENHENCIPLFR*IHGLRDATVV 69
           ++K   HFV ++     +N+  CIP++R    L +AT++
Sbjct: 629 VIKDGVHFVPKIYEGACDNNTCCIPMWRISFSLAEATLI 667


>SB_13681| Best HMM Match : Guanylate_cyc (HMM E-Value=2.8e-27)
          Length = 517

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +3

Query: 351 GVDADNLSARIDRILAEHRQENPKINDHSDAF-IKVLDE 464
           GV A     R+  IL E +++   +NDHS+     VLDE
Sbjct: 479 GVQALGACCRVKEILRERKEKEMNMNDHSNKRPFMVLDE 517


>SB_11187| Best HMM Match : F5_F8_type_C (HMM E-Value=3.7e-10)
          Length = 1163

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +1

Query: 265 ILHKYIKSYRCRHYSSSAGMVLLSKWSALVWT 360
           I H YI S    HYSS   ++  S  S+L+ T
Sbjct: 834 ITHHYIFSIFTHHYSSQPSLITTSSQSSLITT 865


>SB_32707| Best HMM Match : Peptidase_A17 (HMM E-Value=4.8e-22)
          Length = 2269

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +3

Query: 270  AQIYQIVPVPSLFFIGRNGTPLEVVCAGVDADNLS 374
            A+I +   V +  +I  N  P + +  G+D DNLS
Sbjct: 1334 AEIQETADVSNFRYIPSNQNPADTLTRGIDPDNLS 1368


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,341,093
Number of Sequences: 59808
Number of extensions: 409862
Number of successful extensions: 1828
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1738
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1828
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)