Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0384
(750 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
D87684-1|BAA13437.1| 529|Homo sapiens KIAA0242 protein protein. 92 2e-18
EF199840-1|ABM90426.1| 508|Homo sapiens erasin protein. 91 4e-18
BC035594-1|AAH35594.1| 508|Homo sapiens UBXD2 protein protein. 91 4e-18
AC011893-2|AAX88923.1| 508|Homo sapiens unknown protein. 91 4e-18
BC020806-1|AAH20806.1| 95|Homo sapiens UBXD2 protein protein. 49 2e-05
AF231022-1|AAF61928.1| 4349|Homo sapiens protocadherin Fat 2 pro... 34 0.63
DQ084202-1|AAY86709.1| 640|Homo sapiens netrin-G1 ligand splice... 33 1.1
DQ084201-1|AAY86708.1| 640|Homo sapiens netrin-G1 ligand splice... 32 1.9
BC041374-1|AAH41374.3| 640|Homo sapiens LRRC4C protein protein. 32 1.9
AY358293-1|AAQ88660.1| 640|Homo sapiens LNKM292 protein. 32 1.9
AB046800-1|BAB13406.1| 640|Homo sapiens KIAA1580 protein protein. 32 1.9
BT009794-1|AAP88796.1| 853|Homo sapiens phosphodiesterase 6B, c... 30 7.7
BC000249-1|AAH00249.1| 853|Homo sapiens phosphodiesterase 6B, c... 30 7.7
>D87684-1|BAA13437.1| 529|Homo sapiens KIAA0242 protein protein.
Length = 529
Score = 91.9 bits (218), Expect = 2e-18
Identities = 46/118 (38%), Positives = 70/118 (59%)
Frame = +3
Query: 51 KFTMRWYNGSIAEAVNLSKQRNTIFVVFIQGDNDLSDEMSSTLNDVVVRSKLSNESNFLA 230
K M W+ G+I A+ +K+ +FVVF+ GD++ S +M+++ D V SN +F+A
Sbjct: 19 KGAMLWFQGAIPAAIATAKRSGAVFVVFVAGDDEQSTQMAASWEDDKVTEASSN--SFVA 76
Query: 231 VNLKSGSTNYTHFAQIYQIVPVPSLFFIGRNGTPLEVVCAGVDADNLSARIDRILAEH 404
+ + + S F+QIY +V VPS FFIG +G PLEV+ V AD L RI ++ H
Sbjct: 77 IKIDTKSEACLQFSQIYPVVCVPSSFFIGDSGIPLEVIAGSVSADELVTRIHKVRQMH 134
>EF199840-1|ABM90426.1| 508|Homo sapiens erasin protein.
Length = 508
Score = 91.1 bits (216), Expect = 4e-18
Identities = 45/115 (39%), Positives = 69/115 (60%)
Frame = +3
Query: 60 MRWYNGSIAEAVNLSKQRNTIFVVFIQGDNDLSDEMSSTLNDVVVRSKLSNESNFLAVNL 239
M W+ G+I A+ +K+ +FVVF+ GD++ S +M+++ D V SN +F+A+ +
Sbjct: 1 MLWFQGAIPAAIATAKRSGAVFVVFVAGDDEQSTQMAASWEDDKVTEASSN--SFVAIKI 58
Query: 240 KSGSTNYTHFAQIYQIVPVPSLFFIGRNGTPLEVVCAGVDADNLSARIDRILAEH 404
+ S F+QIY +V VPS FFIG +G PLEV+ V AD L RI ++ H
Sbjct: 59 DTKSEACLQFSQIYPVVCVPSSFFIGDSGIPLEVIAGSVSADELVTRIHKVRQMH 113
>BC035594-1|AAH35594.1| 508|Homo sapiens UBXD2 protein protein.
Length = 508
Score = 91.1 bits (216), Expect = 4e-18
Identities = 45/115 (39%), Positives = 69/115 (60%)
Frame = +3
Query: 60 MRWYNGSIAEAVNLSKQRNTIFVVFIQGDNDLSDEMSSTLNDVVVRSKLSNESNFLAVNL 239
M W+ G+I A+ +K+ +FVVF+ GD++ S +M+++ D V SN +F+A+ +
Sbjct: 1 MLWFQGAIPAAIATAKRSGAVFVVFVAGDDEQSTQMAASWEDDKVTEASSN--SFVAIKI 58
Query: 240 KSGSTNYTHFAQIYQIVPVPSLFFIGRNGTPLEVVCAGVDADNLSARIDRILAEH 404
+ S F+QIY +V VPS FFIG +G PLEV+ V AD L RI ++ H
Sbjct: 59 DTKSEACLQFSQIYPVVCVPSSFFIGDSGIPLEVIAGSVSADELVTRIHKVRQMH 113
>AC011893-2|AAX88923.1| 508|Homo sapiens unknown protein.
Length = 508
Score = 91.1 bits (216), Expect = 4e-18
Identities = 45/115 (39%), Positives = 69/115 (60%)
Frame = +3
Query: 60 MRWYNGSIAEAVNLSKQRNTIFVVFIQGDNDLSDEMSSTLNDVVVRSKLSNESNFLAVNL 239
M W+ G+I A+ +K+ +FVVF+ GD++ S +M+++ D V SN +F+A+ +
Sbjct: 1 MLWFQGAIPAAIATAKRSGAVFVVFVAGDDEQSTQMAASWEDDKVTEASSN--SFVAIKI 58
Query: 240 KSGSTNYTHFAQIYQIVPVPSLFFIGRNGTPLEVVCAGVDADNLSARIDRILAEH 404
+ S F+QIY +V VPS FFIG +G PLEV+ V AD L RI ++ H
Sbjct: 59 DTKSEACLQFSQIYPVVCVPSSFFIGDSGIPLEVIAGSVSADELVTRIHKVRQMH 113
>BC020806-1|AAH20806.1| 95|Homo sapiens UBXD2 protein protein.
Length = 95
Score = 49.2 bits (112), Expect = 2e-05
Identities = 24/73 (32%), Positives = 43/73 (58%)
Frame = +3
Query: 60 MRWYNGSIAEAVNLSKQRNTIFVVFIQGDNDLSDEMSSTLNDVVVRSKLSNESNFLAVNL 239
M W+ G+I A+ +K+ +FVVF+ GD++ S +M+++ D V SN +F+A+ +
Sbjct: 1 MLWFQGAIPAAIATAKRSGAVFVVFVAGDDEQSTQMAASWEDDKVTEASSN--SFVAIKI 58
Query: 240 KSGSTNYTHFAQI 278
+ S F+QI
Sbjct: 59 DTKSEACLQFSQI 71
>AF231022-1|AAF61928.1| 4349|Homo sapiens protocadherin Fat 2 protein.
Length = 4349
Score = 33.9 bits (74), Expect = 0.63
Identities = 40/156 (25%), Positives = 70/156 (44%)
Frame = +3
Query: 54 FTMRWYNGSIAEAVNLSKQRNTIFVVFIQGDNDLSDEMSSTLNDVVVRSKLSNESNFLAV 233
F+M Y+G I+ L ++ + + + I+G N M+ DV+V + +E++ +
Sbjct: 1703 FSMNSYSGLISTQKKLDHEKISSYQLKIRGSN-----MAGAFTDVMVVVDIIDENDNAPM 1757
Query: 234 NLKSGSTNYTHFAQIYQIVPVPSLFFIGRNGTPLEVVCAGVDADNLSARIDRILAEHRQE 413
LKS T QI + P+ S+ + +N P + + D + S + +IL +
Sbjct: 1758 FLKS-----TFVGQISEAAPLYSM-IMDKNNNPFVIHASDSDKEANSLLVYKILEPEALK 1811
Query: 414 NPKINDHSDAFIKVLDEYSESDNYELVCGDEICVRV 521
KI D + L SE D YE + + CV V
Sbjct: 1812 FFKI----DPSMGTLTIVSEMD-YESMPSFQFCVYV 1842
>DQ084202-1|AAY86709.1| 640|Homo sapiens netrin-G1 ligand splice
variant 4 protein.
Length = 640
Score = 33.1 bits (72), Expect = 1.1
Identities = 22/54 (40%), Positives = 31/54 (57%), Gaps = 3/54 (5%)
Frame = -3
Query: 190 TTSLSVDDISSD-KSLSPCMKTTKIVFLCFDRFT--ASAMLPLYQRMVNFQYHR 38
T ++ V DI+S + MKTTKI+ CF T A+ ML ++ RM Q+HR
Sbjct: 504 TFTIPVTDINSGIPGIDEVMKTTKIIVGCFVAITLMAAVMLVIFYRM-RKQHHR 556
>DQ084201-1|AAY86708.1| 640|Homo sapiens netrin-G1 ligand splice
variant 3 protein.
Length = 640
Score = 32.3 bits (70), Expect = 1.9
Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 3/54 (5%)
Frame = -3
Query: 190 TTSLSVDDISSD-KSLSPCMKTTKIVFLCFDRFT--ASAMLPLYQRMVNFQYHR 38
T ++ V DI+S + MKTTKI+ CF T A+ ML ++ +M Q+HR
Sbjct: 504 TFTIPVTDINSGIPGIDEVMKTTKIIIGCFVAITLMAAVMLVIFYKM-RKQHHR 556
>BC041374-1|AAH41374.3| 640|Homo sapiens LRRC4C protein protein.
Length = 640
Score = 32.3 bits (70), Expect = 1.9
Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 3/54 (5%)
Frame = -3
Query: 190 TTSLSVDDISSD-KSLSPCMKTTKIVFLCFDRFT--ASAMLPLYQRMVNFQYHR 38
T ++ V DI+S + MKTTKI+ CF T A+ ML ++ +M Q+HR
Sbjct: 504 TFTIPVTDINSGIPGIDEVMKTTKIIIGCFVAITLMAAVMLVIFYKM-RKQHHR 556
>AY358293-1|AAQ88660.1| 640|Homo sapiens LNKM292 protein.
Length = 640
Score = 32.3 bits (70), Expect = 1.9
Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 3/54 (5%)
Frame = -3
Query: 190 TTSLSVDDISSD-KSLSPCMKTTKIVFLCFDRFT--ASAMLPLYQRMVNFQYHR 38
T ++ V DI+S + MKTTKI+ CF T A+ ML ++ +M Q+HR
Sbjct: 504 TFTIPVTDINSGIPGIDEVMKTTKIIIGCFVAITLMAAVMLVIFYKM-RKQHHR 556
>AB046800-1|BAB13406.1| 640|Homo sapiens KIAA1580 protein protein.
Length = 640
Score = 32.3 bits (70), Expect = 1.9
Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 3/54 (5%)
Frame = -3
Query: 190 TTSLSVDDISSD-KSLSPCMKTTKIVFLCFDRFT--ASAMLPLYQRMVNFQYHR 38
T ++ V DI+S + MKTTKI+ CF T A+ ML ++ +M Q+HR
Sbjct: 504 TFTIPVTDINSGIPGIDEVMKTTKIIIGCFVAITLMAAVMLVIFYKM-RKQHHR 556
>BT009794-1|AAP88796.1| 853|Homo sapiens phosphodiesterase 6B,
cGMP-specific, rod, beta (congenital stationary night
bli protein.
Length = 853
Score = 30.3 bits (65), Expect = 7.7
Identities = 16/47 (34%), Positives = 23/47 (48%)
Frame = +3
Query: 393 LAEHRQENPKINDHSDAFIKVLDEYSESDNYELVCGDEICVRVPRPK 533
L +R+E + D +A +K L+E E + G EIC P PK
Sbjct: 800 LQNNRKEWKALADEYEAKVKALEEKEEEERVAAKKGTEICNGGPAPK 846
>BC000249-1|AAH00249.1| 853|Homo sapiens phosphodiesterase 6B,
cGMP-specific, rod, beta (congenital stationary night
bli protein.
Length = 853
Score = 30.3 bits (65), Expect = 7.7
Identities = 16/47 (34%), Positives = 23/47 (48%)
Frame = +3
Query: 393 LAEHRQENPKINDHSDAFIKVLDEYSESDNYELVCGDEICVRVPRPK 533
L +R+E + D +A +K L+E E + G EIC P PK
Sbjct: 800 LQNNRKEWKALADEYEAKVKALEEKEEEERVAAKKGTEICNGGPAPK 846
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 91,273,818
Number of Sequences: 237096
Number of extensions: 1787012
Number of successful extensions: 4262
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 4136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4258
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 9015132854
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -