Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0384
         (750 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF145658-1|AAD38633.1|  656|Drosophila melanogaster BcDNA.GH1022...   109   5e-24
AE014296-1349|AAF50501.1|  656|Drosophila melanogaster CG8042-PA...   109   5e-24

>AF145658-1|AAD38633.1|  656|Drosophila melanogaster BcDNA.GH10229
           protein.
          Length = 656

 Score =  109 bits (261), Expect = 5e-24
 Identities = 55/136 (40%), Positives = 87/136 (63%), Gaps = 2/136 (1%)
 Frame = +3

Query: 60  MRWYNGSIAEAVNLSKQRNTIFVVFIQGDNDLSDEMSSTLNDVVVRSKLSNESNFLAVNL 239
           M W+ G+IAEAV  SK +  +FVVFI+G ++++ ++   ++D  VRS+L   S+F+A+ +
Sbjct: 1   MNWHKGNIAEAVAASKAKGAVFVVFIEGQDEMTRKLERFVDDSQVRSRLET-SDFVAIKV 59

Query: 240 KSGSTNYTHFAQIYQIVPVPSLFFIGRNGTPLEVVCAGVDA--DNLSARIDRILAEHRQE 413
           +  S+ Y  F  +Y+IVP+PSLFFIG+ GTPLE +  GV A  D L+ +ID++L    + 
Sbjct: 60  QGNSSAYGQFMSLYKIVPIPSLFFIGKTGTPLE-IATGVTASVDELTEKIDKVLILAGKR 118

Query: 414 NPKINDHSDAFIKVLD 461
              +   S +  K LD
Sbjct: 119 TEPVAASSSSCAKTLD 134


>AE014296-1349|AAF50501.1|  656|Drosophila melanogaster CG8042-PA,
           isoform A protein.
          Length = 656

 Score =  109 bits (261), Expect = 5e-24
 Identities = 55/136 (40%), Positives = 87/136 (63%), Gaps = 2/136 (1%)
 Frame = +3

Query: 60  MRWYNGSIAEAVNLSKQRNTIFVVFIQGDNDLSDEMSSTLNDVVVRSKLSNESNFLAVNL 239
           M W+ G+IAEAV  SK +  +FVVFI+G ++++ ++   ++D  VRS+L   S+F+A+ +
Sbjct: 1   MNWHKGNIAEAVAASKAKGAVFVVFIEGQDEMTRKLERFVDDSQVRSRLET-SDFVAIKV 59

Query: 240 KSGSTNYTHFAQIYQIVPVPSLFFIGRNGTPLEVVCAGVDA--DNLSARIDRILAEHRQE 413
           +  S+ Y  F  +Y+IVP+PSLFFIG+ GTPLE +  GV A  D L+ +ID++L    + 
Sbjct: 60  QGNSSAYGQFMSLYKIVPIPSLFFIGKTGTPLE-IATGVTASVDELTEKIDKVLILAGKR 118

Query: 414 NPKINDHSDAFIKVLD 461
              +   S +  K LD
Sbjct: 119 TEPVAASSSSCAKTLD 134


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,063,840
Number of Sequences: 53049
Number of extensions: 583915
Number of successful extensions: 1796
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1722
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1794
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3417159966
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)