Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0384
         (750 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g43210.2 68415.m05371 UBX domain-containing protein contains ...    58   5e-09
At2g43210.1 68415.m05370 UBX domain-containing protein contains ...    58   5e-09
At2g44860.1 68415.m05585 60S ribosomal protein L24, putative           33   0.15 
At4g31210.1 68417.m04432 DNA topoisomerase family protein simila...    31   0.62 
At1g53165.1 68414.m06023 protein kinase, putative similar to ser...    31   1.1  
At4g29700.1 68417.m04230 type I phosphodiesterase/nucleotide pyr...    30   1.4  
At1g16800.1 68414.m02018 tRNA-splicing endonuclease positive eff...    30   1.4  
At3g17780.1 68416.m02268 expressed protein                             29   2.5  
At3g01690.1 68416.m00101 expressed protein                             29   2.5  
At5g02430.1 68418.m00167 WD-40 repeat family protein contains 6 ...    29   3.3  
At1g60180.1 68414.m06779 hypothetical protein similar to hypothe...    28   7.6  

>At2g43210.2 68415.m05371 UBX domain-containing protein contains
           Pfam profile PF00789: UBX domain
          Length = 531

 Score = 58.4 bits (135), Expect = 5e-09
 Identities = 36/117 (30%), Positives = 68/117 (58%), Gaps = 2/117 (1%)
 Frame = +3

Query: 69  YNGSIAEAVNLSKQRNTIFVVFIQGDNDLSDEMSS-TLNDVVVRSKLSNESNFLAVNLKS 245
           + GS+ EA+  +K +  +FVV+I G+++ SD+++  T  D  V   LS     + V++++
Sbjct: 9   FKGSLPEAIFEAKGKKKLFVVYISGEDEESDKLNRLTWTDASVADSLSKYC--ILVHIQA 66

Query: 246 GSTNYTHFAQIYQIVPVPSLFFIGRNGTPLEVVCAGVDADNLSARIDRI-LAEHRQE 413
           GS + T+F+ IY    VP +  IG +GT +      + A++L++ +++  L  H QE
Sbjct: 67  GSVDATNFSAIYPYSSVPCIAAIGFSGTQVWRTEGFITAEDLASSLEKAWLGLHIQE 123


>At2g43210.1 68415.m05370 UBX domain-containing protein contains
           Pfam profile PF00789: UBX domain
          Length = 531

 Score = 58.4 bits (135), Expect = 5e-09
 Identities = 36/117 (30%), Positives = 68/117 (58%), Gaps = 2/117 (1%)
 Frame = +3

Query: 69  YNGSIAEAVNLSKQRNTIFVVFIQGDNDLSDEMSS-TLNDVVVRSKLSNESNFLAVNLKS 245
           + GS+ EA+  +K +  +FVV+I G+++ SD+++  T  D  V   LS     + V++++
Sbjct: 9   FKGSLPEAIFEAKGKKKLFVVYISGEDEESDKLNRLTWTDASVADSLSKYC--ILVHIQA 66

Query: 246 GSTNYTHFAQIYQIVPVPSLFFIGRNGTPLEVVCAGVDADNLSARIDRI-LAEHRQE 413
           GS + T+F+ IY    VP +  IG +GT +      + A++L++ +++  L  H QE
Sbjct: 67  GSVDATNFSAIYPYSSVPCIAAIGFSGTQVWRTEGFITAEDLASSLEKAWLGLHIQE 123


>At2g44860.1 68415.m05585 60S ribosomal protein L24, putative
          Length = 159

 Score = 33.5 bits (73), Expect = 0.15
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = +1

Query: 97  IYRNRGIQFSWFSYKVTMTCRTKCHRRLTMSWSDRNSQMNQTF 225
           IY   GIQF     K+   CR+KCH+   M  + R  +  + F
Sbjct: 13  IYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAF 55


>At4g31210.1 68417.m04432 DNA topoisomerase family protein similar
           to DNA Topoisomerase I (SP:Q9X3X7) {Zymomonas mobilis}
          Length = 1280

 Score = 31.5 bits (68), Expect = 0.62
 Identities = 23/78 (29%), Positives = 35/78 (44%)
 Frame = +3

Query: 315 GRNGTPLEVVCAGVDADNLSARIDRILAEHRQENPKINDHSDAFIKVLDEYSESDNYELV 494
           G +G   E+  A   A N   +   + ++ R +N K+ D S + + VL         E V
Sbjct: 333 GSSGIKAELSTAASPASN-GNQATTVKSKRRPKNKKVEDKSSSVVPVL---------EAV 382

Query: 495 CGDEICVRVPRPKHDKPG 548
             DE  + VP+PKH   G
Sbjct: 383 SLDESPISVPKPKHSGSG 400


>At1g53165.1 68414.m06023 protein kinase, putative similar to
           serine/threonine protein kinase 24 [Homo sapiens]
           SWISS-PROT:Q9Y6E0
          Length = 1007

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = +3

Query: 147 NDLSDEM-SSTLNDVVVRSKLSNESNFLAVNLKSGSTNYTHF 269
           ND  +E  SS    VV+RS  S++S+ +  +  SGST YT F
Sbjct: 729 NDYQEEDDSSGSGTVVIRSPRSSQSSSMFRDQSSGSTRYTSF 770


>At4g29700.1 68417.m04230 type I phosphodiesterase/nucleotide
           pyrophosphatase family protein similar to SP|P22413
           Ectonucleotide pyrophosphatase/phosphodiesterase 1
           (Plasma-cell membrane glycoprotein PC-1) [Includes:
           Alkaline phosphodiesterase I (EC 3.1.4.1); Nucleotide
           pyrophosphatase (EC 3.6.1.9) {Homo sapiens}; contains
           Pfam profile PF01663: Type I phosphodiesterase /
           nucleotide pyrophosphatase
          Length = 461

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 14/54 (25%), Positives = 29/54 (53%)
 Frame = +3

Query: 135 IQGDNDLSDEMSSTLNDVVVRSKLSNESNFLAVNLKSGSTNYTHFAQIYQIVPV 296
           ++  ++ + E+ + +N+ +   K+ N   FL V LK       HF++ Y+I P+
Sbjct: 315 VENQSEKNAEVVAKMNEALSSGKVKN-GEFLKVYLKEKLPERLHFSESYRIPPI 367


>At1g16800.1 68414.m02018 tRNA-splicing endonuclease positive
            effector-related contains similarity to SEN1, a positive
            effector of tRNA-splicing endonuclease [Saccharomyces
            cerevisiae] gi|172574|gb|AAB63976
          Length = 1939

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 18/57 (31%), Positives = 35/57 (61%)
 Frame = +3

Query: 69   YNGSIAEAVNLSKQRNTIFVVFIQGDNDLSDEMSSTLNDVVVRSKLSNESNFLAVNL 239
            Y G I+  +++ +  +  FV F+Q +ND S+  S + ND+V+ +K   E++ + VN+
Sbjct: 941  YYGVIS-VLSIERVDDFHFVRFMQDENDGSNSKSFSENDLVLFTKEHPENSNVGVNM 996


>At3g17780.1 68416.m02268 expressed protein
          Length = 129

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 13/43 (30%), Positives = 25/43 (58%)
 Frame = +3

Query: 414 NPKINDHSDAFIKVLDEYSESDNYELVCGDEICVRVPRPKHDK 542
           NP  +  + A  ++LD Y +++ + L+C  E+C    R +H+K
Sbjct: 43  NPAASIVAFAGFQLLDIYWKNE-HRLLCSSEVCTTTERDRHEK 84


>At3g01690.1 68416.m00101 expressed protein
          Length = 361

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +2

Query: 659 LDRNRKQVGTHQATDRSETQRERGEK 736
           LDR+R+ V  H+ T +S  Q ERG K
Sbjct: 325 LDRSRRSVDCHEKTRKSVDQIERGRK 350


>At5g02430.1 68418.m00167 WD-40 repeat family protein contains 6
           WD-40 repeats (PF00400); rab11 binding protein, Bos
           taurus, EMBL:AF117897
          Length = 905

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 14/27 (51%), Positives = 18/27 (66%), Gaps = 3/27 (11%)
 Frame = -3

Query: 364 SASTPAQTTS---RGVPFLPMKNNDGT 293
           + +TP  TT+    G+P LP KNNDGT
Sbjct: 781 TTTTPENTTTGKKSGLPPLPKKNNDGT 807


>At1g60180.1 68414.m06779 hypothetical protein similar to
           hypothetical protein GI:6017113 from [Arabidopsis
           thaliana]
          Length = 296

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = +3

Query: 96  NLSKQRNTIFVVFIQGDNDLSDEMSSTLNDVVVRSKL 206
           NL  +R T+FV  +  +  + D+M   LN+  +RSKL
Sbjct: 237 NLGSKRVTLFVELMLKNTKILDKMVVQLNEHYLRSKL 273


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,970,764
Number of Sequences: 28952
Number of extensions: 275715
Number of successful extensions: 863
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 840
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 861
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1663169840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)