Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0383
         (700 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20988| Best HMM Match : RNA_pol_Rpb2_4 (HMM E-Value=4.6)            30   2.1  
SB_29584| Best HMM Match : DUF1106 (HMM E-Value=8.6)                   29   2.7  

>SB_20988| Best HMM Match : RNA_pol_Rpb2_4 (HMM E-Value=4.6)
          Length = 229

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 11/28 (39%), Positives = 21/28 (75%)
 Frame = +3

Query: 492 YQLCLSLPAESNLKSYSYLNFXKTRQRY 575
           +++C ++P  SNL  ++Y+NF + R+RY
Sbjct: 65  HRICRNIPRSSNL--HNYINFGRLRRRY 90


>SB_29584| Best HMM Match : DUF1106 (HMM E-Value=8.6)
          Length = 219

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 11/28 (39%), Positives = 20/28 (71%)
 Frame = +3

Query: 492 YQLCLSLPAESNLKSYSYLNFXKTRQRY 575
           +++C  +P  SNL  ++Y+NF + R+RY
Sbjct: 74  HRICRKIPRSSNL--HNYINFGRLRRRY 99


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,722,507
Number of Sequences: 59808
Number of extensions: 288843
Number of successful extensions: 657
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 614
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 655
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)