Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0383
         (700 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49072-5|CAA88885.2| 1109|Caenorhabditis elegans Hypothetical pr...    29   2.4  
Z49067-4|CAA88853.2| 1109|Caenorhabditis elegans Hypothetical pr...    29   2.4  
AF308860-1|AAG45416.1| 1475|Caenorhabditis elegans SOP-3 protein.      29   3.2  
AC024201-13|AAF36027.2| 1475|Caenorhabditis elegans Suppressor o...    29   3.2  
AC006810-7|AAK84622.2|  333|Caenorhabditis elegans Serpentine re...    29   4.2  
Z92828-5|CAB07332.2|  586|Caenorhabditis elegans Hypothetical pr...    28   7.4  
AF468834-1|AAL77082.1|  586|Caenorhabditis elegans PRY-1 protein.      28   7.4  

>Z49072-5|CAA88885.2| 1109|Caenorhabditis elegans Hypothetical
           protein C44F1.5 protein.
          Length = 1109

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -3

Query: 662 LNKCVLGWVKYTRSRSPSLFQXTNVRPNLISLP 564
           L KC +GW  Y    SP LF   N R +L+++P
Sbjct: 247 LEKCPIGWKLYGHLPSPELF-PVNKRFSLVTVP 278


>Z49067-4|CAA88853.2| 1109|Caenorhabditis elegans Hypothetical
           protein C44F1.5 protein.
          Length = 1109

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -3

Query: 662 LNKCVLGWVKYTRSRSPSLFQXTNVRPNLISLP 564
           L KC +GW  Y    SP LF   N R +L+++P
Sbjct: 247 LEKCPIGWKLYGHLPSPELF-PVNKRFSLVTVP 278


>AF308860-1|AAG45416.1| 1475|Caenorhabditis elegans SOP-3 protein.
          Length = 1475

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = -2

Query: 96  KRGKGEGKVARASFVGRQGAPRAGEVGFG 10
           K+G+G G V  A+  GR+ A  AGE  FG
Sbjct: 717 KKGRGAGAVGAAAAGGRKSAGGAGENPFG 745


>AC024201-13|AAF36027.2| 1475|Caenorhabditis elegans Suppressor of
           pal-1 protein 3,isoform a protein.
          Length = 1475

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = -2

Query: 96  KRGKGEGKVARASFVGRQGAPRAGEVGFG 10
           K+G+G G V  A+  GR+ A  AGE  FG
Sbjct: 717 KKGRGAGAVGAAAAGGRKSAGGAGENPFG 745


>AC006810-7|AAK84622.2|  333|Caenorhabditis elegans Serpentine
           receptor, class t protein40 protein.
          Length = 333

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 17/57 (29%), Positives = 28/57 (49%)
 Frame = +1

Query: 181 ILNNIVVSATSYIAATYSWLRLTKCTKIVS*SYYHQNNTVQMRF*TRSKHEATFGEK 351
           I+N IVV     ++A + W  +  C  ++   Y   N T+++RF  + K    FG K
Sbjct: 264 IMNVIVVPGWLIMSAHFIWQFVHGCPVLI---YLTLNETIRVRFVQKLKLNVIFGNK 317


>Z92828-5|CAB07332.2|  586|Caenorhabditis elegans Hypothetical
           protein C37A5.9 protein.
          Length = 586

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +2

Query: 590 HLXXEKARENGNVCILPTLKRTCLDVYEW 676
           H+  E+AREN     LP +++  +D  +W
Sbjct: 240 HIRDEQARENHGTMTLPRVEKASVDGQQW 268


>AF468834-1|AAL77082.1|  586|Caenorhabditis elegans PRY-1 protein.
          Length = 586

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +2

Query: 590 HLXXEKARENGNVCILPTLKRTCLDVYEW 676
           H+  E+AREN     LP +++  +D  +W
Sbjct: 240 HIRDEQARENHGTMTLPRVEKASVDGQQW 268


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,010,163
Number of Sequences: 27780
Number of extensions: 213912
Number of successful extensions: 415
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 409
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 415
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)