Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0382
         (750 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    27   0.16 
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    27   0.16 
EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetyla...    24   1.5  
AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like pr...    23   3.4  
AJ850297-1|CAH64517.1|  539|Tribolium castaneum putative esteras...    21   8.0  
AJ850295-1|CAH64515.1|  539|Tribolium castaneum putative esteras...    21   8.0  
AJ850294-1|CAH64514.1|  539|Tribolium castaneum putative esteras...    21   8.0  
AJ850293-1|CAH64513.1|  539|Tribolium castaneum putative esteras...    21   8.0  
AJ850292-1|CAH64512.1|  539|Tribolium castaneum putative esteras...    21   8.0  

>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 27.1 bits (57), Expect = 0.16
 Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = +2

Query: 506 LFDALGIAQPKGVL-LYGPPGTGKTLLARAVAHHTECTFIRVSGSELV 646
           L +  G+A P  +L + G  G GKT L   +  HT    + VSG   V
Sbjct: 94  LKNVFGVAYPGELLAILGSSGAGKTTLLNTLTFHTSSN-LTVSGLRCV 140


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 27.1 bits (57), Expect = 0.16
 Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = +2

Query: 506 LFDALGIAQPKGVL-LYGPPGTGKTLLARAVAHHTECTFIRVSGSELV 646
           L +  G+A P  +L + G  G GKT L   +  HT    + VSG   V
Sbjct: 94  LKNVFGVAYPGELLAILGSSGAGKTTLLNTLTFHTSSN-LTVSGLRCV 140


>EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetylase
           1 protein.
          Length = 534

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +3

Query: 660 GEGSRMVRELFRNGQRTCS 716
           G+G+ + R LF NG++ CS
Sbjct: 125 GDGNCIERGLFCNGEKDCS 143


>AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like
           protein protein.
          Length = 242

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -2

Query: 92  RQ*AVTLQSWLCSTGENPHPS 30
           R+   TL++WL    +NP+P+
Sbjct: 93  RESTATLKAWLNEHKKNPYPT 113


>AJ850297-1|CAH64517.1|  539|Tribolium castaneum putative esterase
           protein.
          Length = 539

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 8/24 (33%), Positives = 11/24 (45%)
 Frame = -1

Query: 603 W*ATARANNVFPVPGGPYSKTPFG 532
           W  T     V+   G PY++ P G
Sbjct: 30  WQTTMNGRRVYRFEGIPYAQPPVG 53


>AJ850295-1|CAH64515.1|  539|Tribolium castaneum putative esterase
           protein.
          Length = 539

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 8/24 (33%), Positives = 11/24 (45%)
 Frame = -1

Query: 603 W*ATARANNVFPVPGGPYSKTPFG 532
           W  T     V+   G PY++ P G
Sbjct: 30  WQTTMNGRRVYRFEGIPYAQPPVG 53


>AJ850294-1|CAH64514.1|  539|Tribolium castaneum putative esterase
           protein.
          Length = 539

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 8/24 (33%), Positives = 11/24 (45%)
 Frame = -1

Query: 603 W*ATARANNVFPVPGGPYSKTPFG 532
           W  T     V+   G PY++ P G
Sbjct: 30  WQTTMNGRRVYRFEGIPYAQPPVG 53


>AJ850293-1|CAH64513.1|  539|Tribolium castaneum putative esterase
           protein.
          Length = 539

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 8/24 (33%), Positives = 11/24 (45%)
 Frame = -1

Query: 603 W*ATARANNVFPVPGGPYSKTPFG 532
           W  T     V+   G PY++ P G
Sbjct: 30  WQTTMNGRRVYRFEGIPYAQPPVG 53


>AJ850292-1|CAH64512.1|  539|Tribolium castaneum putative esterase
           protein.
          Length = 539

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 8/24 (33%), Positives = 11/24 (45%)
 Frame = -1

Query: 603 W*ATARANNVFPVPGGPYSKTPFG 532
           W  T     V+   G PY++ P G
Sbjct: 30  WQTTMNGRRVYRFEGIPYAQPPVG 53


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,754
Number of Sequences: 336
Number of extensions: 3813
Number of successful extensions: 17
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20027417
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)