Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0382
         (750 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   3.1  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     22   5.3  
S76958-1|AAB33933.1|   90|Apis mellifera olfactory receptor prot...    22   7.1  
L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein pro...    22   7.1  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    22   7.1  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    21   9.3  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +1

Query: 394  AHDGRESAGLYLRNGRWSRQTNQGDQRG 477
            AH    S  +  +NGR+SR  +QG   G
Sbjct: 1771 AHSRSGSQSMPRQNGRYSRVPSQGGGSG 1798


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +2

Query: 608 ECTFIRVSGSEL 643
           ECTFI V+G E+
Sbjct: 120 ECTFISVNGKEV 131


>S76958-1|AAB33933.1|   90|Apis mellifera olfactory receptor
           protein.
          Length = 90

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +2

Query: 437 VGGLDKQIKEIKEVIELPVKHPELFD 514
           VGG    I +I  +I+LP   P + D
Sbjct: 10  VGGFCHSIIQIPVIIQLPFCGPNVID 35


>L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein
           protein.
          Length = 74

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = -2

Query: 599 ERQHELIMSFQCPEAH 552
           ER H     F+CPE H
Sbjct: 1   ERTHTGEKPFECPECH 16


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +3

Query: 630 LDQNWYKNLL 659
           +D NWYKN L
Sbjct: 22  VDANWYKNAL 31


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 9/38 (23%), Positives = 21/38 (55%)
 Frame = -1

Query: 750 NRVYFVHENDRRSMFSGHYERALAPFCCLLPINFCTNS 637
           N +Y + +N ++ +FS +  +    F  +  ++F TN+
Sbjct: 358 NTMYVLSDNFQQLLFSKYDAKKRNFFITMFDLDFLTNA 395


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 202,847
Number of Sequences: 438
Number of extensions: 4300
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)