Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0382
(750 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g20000.1 68418.m02380 26S proteasome AAA-ATPase subunit, puta... 331 3e-91
At5g19990.1 68418.m02379 26S proteasome AAA-ATPase subunit (RPT6a) 330 6e-91
At1g53780.1 68414.m06120 26S proteasome AAA-ATPase subunit, puta... 155 2e-38
At1g53750.1 68414.m06115 26S proteasome AAA-ATPase subunit (RPT1... 155 2e-38
At1g45000.1 68414.m05158 26S proteasome regulatory complex subun... 152 2e-37
At5g43010.1 68418.m05245 26S proteasome AAA-ATPase subunit (RPT4... 152 3e-37
At4g29040.1 68417.m04153 26S proteasome AAA-ATPase subunit (RPT2... 151 4e-37
At2g20140.1 68415.m02353 26S protease regulatory complex subunit... 151 4e-37
At5g58290.1 68418.m07297 26S proteasome AAA-ATPase subunit (RPT3... 132 2e-31
At3g05530.1 68416.m00606 26S proteasome AAA-ATPase subunit (RPT5... 124 6e-29
At1g09100.1 68414.m01016 26S protease regulatory subunit 6A, put... 124 6e-29
At3g09840.1 68416.m01174 cell division cycle protein 48 (CDC48A)... 107 6e-24
At5g03340.1 68418.m00286 cell division cycle protein 48, putativ... 106 2e-23
At3g53230.1 68416.m05865 cell division cycle protein 48, putativ... 106 2e-23
At1g03000.1 68414.m00271 AAA-type ATPase family protein contains... 87 9e-18
At5g15250.1 68418.m01786 FtsH protease, putative similar to FtsH... 85 6e-17
At3g56690.1 68416.m06306 calmodulin-binding protein identical to... 84 8e-17
At2g30950.1 68415.m03775 FtsH protease (VAR2) identical to zinc ... 83 1e-16
At1g06430.1 68414.m00680 FtsH protease, putative similar to zinc... 83 1e-16
At3g01610.1 68416.m00092 AAA-type ATPase family protein contains... 82 4e-16
At4g02480.1 68417.m00335 AAA-type ATPase family protein contains... 81 6e-16
At4g24860.1 68417.m03559 AAA-type ATPase family protein contains... 81 8e-16
At2g03670.1 68415.m00326 AAA-type ATPase family protein contains... 81 1e-15
At5g53540.1 68418.m06653 MSP1 protein, putative / intramitochond... 80 1e-15
At4g28000.1 68417.m04016 AAA-type ATPase family protein contains... 79 2e-15
At1g64110.2 68414.m07264 AAA-type ATPase family protein contains... 79 2e-15
At1g64110.1 68414.m07263 AAA-type ATPase family protein contains... 79 2e-15
At2g34560.2 68415.m04246 katanin, putative similar to katanin p6... 78 5e-15
At2g34560.1 68415.m04245 katanin, putative similar to katanin p6... 78 5e-15
At2g45500.1 68415.m05659 AAA-type ATPase family protein similar ... 78 7e-15
At4g23940.1 68417.m03443 FtsH protease, putative contains simila... 77 9e-15
At1g50140.1 68414.m05623 AAA-type ATPase family protein contains... 77 9e-15
At5g42270.1 68418.m05145 FtsH protease, putative similar to FtsH... 77 2e-14
At3g19740.1 68416.m02499 AAA-type ATPase family protein contains... 77 2e-14
At4g27680.1 68417.m03980 MSP1 protein, putative / intramitochond... 76 2e-14
At3g47060.1 68416.m05110 FtsH protease, putative contains simila... 76 2e-14
At5g58870.1 68418.m07376 FtsH protease, putative contains simila... 75 4e-14
At1g50250.1 68414.m05634 cell division protein ftsH homolog 1, c... 75 4e-14
At1g02890.1 68414.m00256 AAA-type ATPase family protein contains... 75 5e-14
At2g27600.1 68415.m03346 AAA-type ATPase family protein / vacuol... 74 1e-13
At1g05910.1 68414.m00620 cell division cycle protein 48-related ... 74 1e-13
At2g29080.1 68415.m03535 FtsH protease, putative similar to AAA-... 73 2e-13
At1g80350.1 68414.m09406 katanin 1 (KTN1) identical to katanin 1... 72 4e-13
At2g26140.1 68415.m03137 FtsH protease, putative contains simila... 71 8e-13
At5g64580.1 68418.m08116 AAA-type ATPase family protein similar ... 70 1e-12
At5g08470.1 68418.m00999 peroxisome biogenesis protein (PEX1) id... 70 1e-12
At1g07510.1 68414.m00804 FtsH protease, putative similar to AAA-... 70 1e-12
At5g53170.1 68418.m06610 FtsH protease, putative similar to ATP-... 70 2e-12
At3g02450.1 68416.m00232 cell division protein ftsH, putative si... 69 3e-12
At3g27120.1 68416.m03393 spastin ATPase, putative similar to SWI... 69 3e-12
At3g16290.1 68416.m02056 FtsH protease, putative contains simila... 66 2e-11
At3g15120.1 68416.m01913 AAA-type ATPase family protein contains... 64 7e-11
At1g62130.1 68414.m07010 AAA-type ATPase family protein contains... 60 2e-09
At4g04910.1 68417.m00714 AAA-type ATPase family protein similar ... 58 6e-09
At4g04180.1 68417.m00593 AAA-type ATPase family protein contains... 51 7e-07
At3g04340.1 68416.m00459 FtsH protease family protein similar to... 50 2e-06
At5g17760.2 68418.m02083 AAA-type ATPase family protein contains... 48 9e-06
At5g17760.1 68418.m02082 AAA-type ATPase family protein contains... 48 9e-06
At3g50930.1 68416.m05576 AAA-type ATPase family protein contains... 47 1e-05
At1g79560.1 68414.m09275 FtsH protease, putative contains simila... 46 3e-05
At3g50940.1 68416.m05577 AAA-type ATPase family protein contains... 46 4e-05
At2g18193.1 68415.m02117 AAA-type ATPase family protein contains... 45 5e-05
At2g18190.1 68415.m02116 AAA-type ATPase family protein contains... 45 6e-05
At1g43910.1 68414.m05066 AAA-type ATPase family protein contains... 44 1e-04
At5g17740.1 68418.m02080 AAA-type ATPase family protein h-bcs1, ... 42 3e-04
At5g17730.1 68418.m02079 AAA-type ATPase family protein contains... 42 4e-04
At3g28580.1 68416.m03568 AAA-type ATPase family protein contains... 41 8e-04
At3g28570.1 68416.m03567 AAA-type ATPase family protein contains... 41 8e-04
At5g17750.1 68418.m02081 AAA-type ATPase family protein contains... 41 0.001
At4g05380.1 68417.m00820 AAA-type ATPase family protein contains... 40 0.001
At3g28600.1 68416.m03570 AAA-type ATPase family protein contains... 40 0.002
At4g30250.1 68417.m04301 AAA-type ATPase family protein contains... 39 0.003
At3g28520.1 68416.m03562 AAA-type ATPase family protein contains... 39 0.003
At1g21690.1 68414.m02714 replication factor C 37 kDa, putative S... 39 0.004
At5g57480.1 68418.m07183 AAA-type ATPase family protein contains... 38 0.005
At5g40010.1 68418.m04852 AAA-type ATPase family protein contains... 38 0.005
At5g40000.1 68418.m04851 AAA-type ATPase family protein BCS1 nuc... 38 0.005
At5g16930.1 68418.m01984 AAA-type ATPase family protein contains... 38 0.005
At4g36580.1 68417.m05193 AAA-type ATPase family protein contains... 38 0.005
At2g18330.1 68415.m02136 AAA-type ATPase family protein contains... 38 0.005
At4g25835.1 68417.m03716 AAA-type ATPase family protein contains... 38 0.007
At3g28610.1 68416.m03571 AAA-type ATPase family protein contains... 38 0.009
At3g03060.1 68416.m00302 AAA-type ATPase family protein contains... 38 0.009
At3g28540.1 68416.m03564 AAA-type ATPase family protein contains... 37 0.012
At3g28510.1 68416.m03561 AAA-type ATPase family protein contains... 37 0.012
At3g05780.1 68416.m00649 Lon protease, putative similar to Lon p... 36 0.038
At2g46620.1 68415.m05815 AAA-type ATPase family protein contains... 36 0.038
At1g21690.2 68414.m02715 replication factor C 37 kDa, putative S... 36 0.038
At1g08270.2 68414.m00912 expressed protein low similarity to SP|... 36 0.038
At5g53350.1 68418.m06630 ATP-dependent Clp protease ATP-binding ... 35 0.050
At5g26860.1 68418.m03204 Lon protease homolog 2, mitochondrial a... 35 0.066
At3g30842.1 68416.m03968 ABC transporter protein, putative simil... 34 0.088
At1g67120.1 68414.m07636 midasin-related similar to Midasin (MID... 34 0.088
At1g33360.1 68414.m04129 ATP-dependent Clp protease ATP-binding ... 34 0.088
At4g14670.1 68417.m02255 heat shock protein 101, putative / HSP1... 34 0.12
At5g22330.1 68418.m02605 TATA box-binding protein-interacting pr... 33 0.15
At4g24710.1 68417.m03536 AAA-type ATPase family protein similar ... 33 0.15
At5g49840.1 68418.m06172 ATP-dependent Clp protease ATP-binding ... 33 0.20
At3g51570.1 68416.m05648 disease resistance protein (TIR-NBS-LRR... 33 0.20
At3g05790.1 68416.m00650 Lon protease, putative similar to Lon p... 33 0.27
At2g36380.1 68415.m04464 ABC transporter family protein related ... 33 0.27
At2g37280.1 68415.m04573 ABC transporter family protein similar ... 32 0.35
At5g67630.1 68418.m08527 DNA helicase, putative similar to RuvB-... 32 0.47
At5g47010.1 68418.m05794 RNA helicase, putative similar to type ... 32 0.47
At1g77470.1 68414.m09021 replication factor C 36 kDA, putative s... 32 0.47
At1g66950.1 68414.m07612 ABC transporter family protein similar ... 32 0.47
At2g25140.1 68415.m03007 heat shock protein 100, putative / HSP1... 31 0.62
At5g15450.1 68418.m01808 heat shock protein 100, putative / HSP1... 31 0.82
At1g15520.1 68414.m01867 ABC transporter family protein similar ... 31 0.82
At1g04730.1 68414.m00469 AAA-type ATPase family protein contains... 31 0.82
At1g74310.1 68414.m08605 heat shock protein 101 (HSP101) identic... 31 1.1
At3g49830.1 68416.m05448 DNA helicase-related similar to DNA hel... 30 1.4
At2g16870.1 68415.m01941 disease resistance protein (TIR-NBS-LRR... 30 1.4
At4g15236.1 68417.m02335 ABC transporter family protein similar ... 30 1.9
At3g29800.1 68416.m03792 AAA-type ATPase family contains Pfam pr... 30 1.9
At2g29940.1 68415.m03642 ABC transporter family protein similar ... 30 1.9
At2g17060.1 68415.m01970 disease resistance protein (TIR-NBS-LRR... 30 1.9
At1g63880.1 68414.m07234 disease resistance protein (TIR-NBS-LRR... 30 1.9
At1g60700.1 68414.m06833 forkhead-associated domain-containing p... 30 1.9
At1g15210.1 68414.m01818 ABC transporter family protein Similar ... 30 1.9
At5g47040.1 68418.m05797 Lon protease homolog 1, mitochondrial (... 29 2.5
At4g15570.1 68417.m02379 tRNA-splicing endonuclease positive eff... 29 2.5
At4g15230.1 68417.m02333 ABC transporter family protein similar ... 29 2.5
At4g15215.1 68417.m02332 ABC transporter family protein similar ... 29 2.5
At3g24530.1 68416.m03080 AAA-type ATPase family protein / ankyri... 29 2.5
At3g16340.1 68416.m02066 ABC transporter family protein similar ... 29 2.5
At1g63750.1 68414.m07214 disease resistance protein (TIR-NBS-LRR... 29 2.5
At1g63160.1 68414.m07138 replication factor C 40 kDa, putative s... 29 2.5
At1g59870.1 68414.m06745 ABC transporter family protein similar ... 29 2.5
At1g08270.1 68414.m00913 expressed protein low similarity to SP|... 29 2.5
At5g46470.1 68418.m05723 disease resistance protein (TIR-NBS-LRR... 29 3.3
At5g11250.1 68418.m01314 disease resistance protein (TIR-NBS-LRR... 29 3.3
At4g30490.1 68417.m04329 AFG1-like ATPase family protein contain... 29 3.3
At3g53480.1 68416.m05904 ABC transporter family protein PDR5-lik... 29 3.3
At3g04220.1 68416.m00446 disease resistance protein (TIR-NBS-LRR... 29 3.3
At1g73170.1 68414.m08466 expressed protein 29 3.3
At1g24290.1 68414.m03065 AAA-type ATPase family protein similar ... 29 3.3
At5g41540.1 68418.m05048 disease resistance protein (TIR-NBS-LRR... 29 4.4
At5g17890.1 68418.m02098 LIM domain-containing protein / disease... 29 4.4
At5g35970.1 68418.m04332 DNA-binding protein, putative similar t... 28 5.8
At4g26090.1 68417.m03756 disease resistance protein RPS2 (CC-NBS... 28 5.8
At1g14460.1 68414.m01715 DNA polymerase-related weak similarity ... 28 5.8
At1g06720.1 68414.m00714 expressed protein contains Pfam domain,... 28 5.8
At5g66005.2 68418.m08311 Expressed protein 28 7.6
At5g58120.1 68418.m07272 disease resistance protein (TIR-NBS-LRR... 28 7.6
At5g22010.1 68418.m02561 AAA-type ATPase family protein / BRCT d... 28 7.6
At4g38870.1 68417.m05504 F-box family protein contains Pfam prof... 28 7.6
At4g28070.1 68417.m04026 AFG1-like ATPase family protein contain... 28 7.6
At1g79050.1 68414.m09217 DNA repair protein recA identical to DN... 28 7.6
>At5g20000.1 68418.m02380 26S proteasome AAA-ATPase subunit,
putative almost identical to 26S proteasome AAA-ATPase
subunit RPT6a GI:6652888 from [Arabidopsis thaliana];
almost identical to a member of conserved Sug1 CAD
family AtSUG1 GI:13537115 from [Arabidopsis thaliana]
Length = 419
Score = 331 bits (814), Expect = 3e-91
Identities = 155/210 (73%), Positives = 181/210 (86%)
Frame = +2
Query: 32 KGEGFRPYYITKIEELQLIVAEKSQNLRRLQAQRNELNAKVRMLRXXXXXXXXXGSYVGE 211
+GEG YY+ ++ELQ + EKS NL RL+AQRNELN++VRMLR GSYVGE
Sbjct: 28 QGEGLNKYYLQHLDELQRLQREKSYNLNRLEAQRNELNSRVRMLREELQLLQEPGSYVGE 87
Query: 212 VVKPMDKKKVLVKVHPEGKFVVDLDKNVDINDVTANCRVALRNESYTLHKILPNKVDPLV 391
VVK M K KVLVKVHPEGK+VVD+DK++DI +T + RVALRN+SY LH +LP+KVDPLV
Sbjct: 88 VVKVMGKNKVLVKVHPEGKYVVDIDKSIDITKLTPSTRVALRNDSYVLHLVLPSKVDPLV 147
Query: 392 SLMMVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTG 571
+LM VEKVPDSTY+M+GGLD+QIKEIKEVIELP+KHPELF++LGIAQPKGVLLYGPPGTG
Sbjct: 148 NLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTG 207
Query: 572 KTLLARAVAHHTECTFIRVSGSELVQKFIG 661
KTLLARAVAHHT+CTFIRVSGSELVQK+IG
Sbjct: 208 KTLLARAVAHHTDCTFIRVSGSELVQKYIG 237
Score = 45.2 bits (102), Expect = 5e-05
Identities = 27/52 (51%), Positives = 35/52 (67%), Gaps = 5/52 (9%)
Frame = +1
Query: 610 VYFHT-CFWIRI-GTKI---YWEKAAEWCESSFVMAREHAPSIIFMDEINSI 750
V HT C +IR+ G+++ Y + + FVMAREHAPSIIFMDEI+SI
Sbjct: 215 VAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSI 266
>At5g19990.1 68418.m02379 26S proteasome AAA-ATPase subunit (RPT6a)
Length = 419
Score = 330 bits (811), Expect = 6e-91
Identities = 154/210 (73%), Positives = 181/210 (86%)
Frame = +2
Query: 32 KGEGFRPYYITKIEELQLIVAEKSQNLRRLQAQRNELNAKVRMLRXXXXXXXXXGSYVGE 211
+GEG + YY+ I ELQ + +K+ NL RL+AQRNELN++VRMLR GSYVGE
Sbjct: 28 QGEGLKQYYLQHIHELQRQLRQKTNNLNRLEAQRNELNSRVRMLREELQLLQEPGSYVGE 87
Query: 212 VVKPMDKKKVLVKVHPEGKFVVDLDKNVDINDVTANCRVALRNESYTLHKILPNKVDPLV 391
VVK M K KVLVKVHPEGK+VVD+DK++DI +T + RVALRN+SY LH +LP+KVDPLV
Sbjct: 88 VVKVMGKNKVLVKVHPEGKYVVDIDKSIDITKITPSTRVALRNDSYVLHLVLPSKVDPLV 147
Query: 392 SLMMVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTG 571
+LM VEKVPDSTY+M+GGLD+QIKEIKEVIELP+KHPELF++LGIAQPKGVLLYGPPGTG
Sbjct: 148 NLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTG 207
Query: 572 KTLLARAVAHHTECTFIRVSGSELVQKFIG 661
KTLLARAVAHHT+CTFIRVSGSELVQK+IG
Sbjct: 208 KTLLARAVAHHTDCTFIRVSGSELVQKYIG 237
Score = 45.2 bits (102), Expect = 5e-05
Identities = 27/52 (51%), Positives = 35/52 (67%), Gaps = 5/52 (9%)
Frame = +1
Query: 610 VYFHT-CFWIRI-GTKI---YWEKAAEWCESSFVMAREHAPSIIFMDEINSI 750
V HT C +IR+ G+++ Y + + FVMAREHAPSIIFMDEI+SI
Sbjct: 215 VAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSI 266
>At1g53780.1 68414.m06120 26S proteasome AAA-ATPase subunit,
putative similar to 26S proteasome AAA-ATPase subunit
RPT1 SP:Q41365 from [Spinacia oleracea]
Length = 464
Score = 155 bits (377), Expect = 2e-38
Identities = 76/152 (50%), Positives = 103/152 (67%), Gaps = 1/152 (0%)
Frame = +2
Query: 209 EVVKP-MDKKKVLVKVHPEGKFVVDLDKNVDINDVTANCRVALRNESYTLHKILPNKVDP 385
+++ P + K +V + GK+VV L D+ A RV + + Y + LP K+DP
Sbjct: 130 QIISPNTEDAKYVVDIKKIGKYVVGLGDKASPTDIEAGMRVGVDQKKYQIQIPLPPKIDP 189
Query: 386 LVSLMMVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPG 565
V++M VE+ PD+TY +GG +QI++I+EV+ELP+ HPE F LGI PKGVL YGPPG
Sbjct: 190 SVTMMTVEEKPDATYSDIGGCKEQIEKIREVVELPMLHPEKFVRLGIDPPKGVLCYGPPG 249
Query: 566 TGKTLLARAVAHHTECTFIRVSGSELVQKFIG 661
+GKTL+ARAVA+ T FIRV GSELVQK+IG
Sbjct: 250 SGKTLVARAVANRTGACFIRVVGSELVQKYIG 281
>At1g53750.1 68414.m06115 26S proteasome AAA-ATPase subunit (RPT1a)
similar to 26S proteasome ATPase subunit GI:1395190 from
[Spinacia oleracea]
Length = 426
Score = 155 bits (377), Expect = 2e-38
Identities = 77/152 (50%), Positives = 101/152 (66%), Gaps = 1/152 (0%)
Frame = +2
Query: 209 EVVKP-MDKKKVLVKVHPEGKFVVDLDKNVDINDVTANCRVALRNESYTLHKILPNKVDP 385
+++ P + K ++ V KFVV L V D+ RV + Y + LP K+DP
Sbjct: 93 KIISPNTEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDP 152
Query: 386 LVSLMMVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPG 565
V++M VE+ PD TY VGG +QI++++EV+ELP+ HPE F LGI PKGVL YGPPG
Sbjct: 153 SVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPG 212
Query: 566 TGKTLLARAVAHHTECTFIRVSGSELVQKFIG 661
TGKTLLARAVA+ T+ FIRV GSELVQK++G
Sbjct: 213 TGKTLLARAVANRTDACFIRVIGSELVQKYVG 244
>At1g45000.1 68414.m05158 26S proteasome regulatory complex subunit
p42D, putative similar to 26S proteasome regulatory
complex subunit p42D [Drosophila melanogaster]
gi|6434958|gb|AAF08391
Length = 399
Score = 152 bits (369), Expect = 2e-37
Identities = 79/197 (40%), Positives = 122/197 (61%)
Frame = +2
Query: 71 EELQLIVAEKSQNLRRLQAQRNELNAKVRMLRXXXXXXXXXGSYVGEVVKPMDKKKVLVK 250
+EL+ V +NLR + + N+ ++ L+ G +GEV++P+D ++++VK
Sbjct: 26 KELESRVRTARENLRAAKKEFNKTEDDLKSLQSV-------GQIIGEVLRPLDNERLIVK 78
Query: 251 VHPEGKFVVDLDKNVDINDVTANCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTY 430
++VV VD +T+ RV L + T+ + LP +VDP+V M+ E + +Y
Sbjct: 79 ASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNISY 138
Query: 431 EMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTE 610
VGGL QI+E++E IELP+ +PELF +GI PKGVLLYGPPGTGKTLLARA+A + +
Sbjct: 139 SAVGGLGDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNID 198
Query: 611 CTFIRVSGSELVQKFIG 661
F++V S ++ K+IG
Sbjct: 199 ANFLKVVSSAIIDKYIG 215
Score = 33.5 bits (73), Expect = 0.15
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +1
Query: 655 YWEKAAEWCESSFVMAREHAPSIIFMDEINSI 750
Y ++A F AREH P IIFMDEI++I
Sbjct: 213 YIGESARLIREMFNYAREHQPCIIFMDEIDAI 244
>At5g43010.1 68418.m05245 26S proteasome AAA-ATPase subunit (RPT4a)
gb|AAF22524.1
Length = 399
Score = 152 bits (368), Expect = 3e-37
Identities = 79/197 (40%), Positives = 122/197 (61%)
Frame = +2
Query: 71 EELQLIVAEKSQNLRRLQAQRNELNAKVRMLRXXXXXXXXXGSYVGEVVKPMDKKKVLVK 250
+EL+ V +NLR + + N+ ++ L+ G +GEV++P+D ++++VK
Sbjct: 26 KELESRVRTARENLRGAKKEFNKTEDDLKSLQSV-------GQIIGEVLRPLDNERLIVK 78
Query: 251 VHPEGKFVVDLDKNVDINDVTANCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTY 430
++VV VD +T+ RV L + T+ + LP +VDP+V M+ E + +Y
Sbjct: 79 ASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNISY 138
Query: 431 EMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTE 610
VGGL QI+E++E IELP+ +PELF +GI PKGVLLYGPPGTGKTLLARA+A + +
Sbjct: 139 SAVGGLGDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNID 198
Query: 611 CTFIRVSGSELVQKFIG 661
F++V S ++ K+IG
Sbjct: 199 ANFLKVVSSAIIDKYIG 215
Score = 33.5 bits (73), Expect = 0.15
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +1
Query: 655 YWEKAAEWCESSFVMAREHAPSIIFMDEINSI 750
Y ++A F AREH P IIFMDEI++I
Sbjct: 213 YIGESARLIREMFNYAREHQPCIIFMDEIDAI 244
>At4g29040.1 68417.m04153 26S proteasome AAA-ATPase subunit (RPT2a)
almost identical to 26S proteasome AAA-ATPase subunit
RPT2a (GI:6652880) {Arabidopsis thaliana}; Drosophila
melanogaster 26S proteasome subunit 4 ATPase,
PID:g1066065
Length = 443
Score = 151 bits (367), Expect = 4e-37
Identities = 71/153 (46%), Positives = 106/153 (69%)
Frame = +2
Query: 203 VGEVVKPMDKKKVLVKVHPEGKFVVDLDKNVDINDVTANCRVALRNESYTLHKILPNKVD 382
VG + + +D+ +V ++ V + VD + + C + + N+ ++ IL ++VD
Sbjct: 112 VGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCSILMHNKVLSVVGILQDEVD 171
Query: 383 PLVSLMMVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPP 562
P+VS+M VEK P +Y +GGL+ QI+EIKE +ELP+ HPEL++ +GI PKGV+LYG P
Sbjct: 172 PMVSVMKVEKAPLESYADIGGLEAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEP 231
Query: 563 GTGKTLLARAVAHHTECTFIRVSGSELVQKFIG 661
GTGKTLLA+AVA+ T TF+RV GSEL+QK++G
Sbjct: 232 GTGKTLLAKAVANSTSATFLRVVGSELIQKYLG 264
>At2g20140.1 68415.m02353 26S protease regulatory complex subunit 4,
putative similar to Swiss-Prot:P48601 26S protease
regulatory subunit 4 (P26S4) [Drosophila melanogaster]
Length = 443
Score = 151 bits (367), Expect = 4e-37
Identities = 71/153 (46%), Positives = 106/153 (69%)
Frame = +2
Query: 203 VGEVVKPMDKKKVLVKVHPEGKFVVDLDKNVDINDVTANCRVALRNESYTLHKILPNKVD 382
VG + + +D+ +V ++ V + VD + + C + + N+ ++ IL ++VD
Sbjct: 112 VGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCSILMHNKVLSVVGILQDEVD 171
Query: 383 PLVSLMMVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPP 562
P+VS+M VEK P +Y +GGL+ QI+EIKE +ELP+ HPEL++ +GI PKGV+LYG P
Sbjct: 172 PMVSVMKVEKAPLESYADIGGLEAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEP 231
Query: 563 GTGKTLLARAVAHHTECTFIRVSGSELVQKFIG 661
GTGKTLLA+AVA+ T TF+RV GSEL+QK++G
Sbjct: 232 GTGKTLLAKAVANSTSATFLRVVGSELIQKYLG 264
>At5g58290.1 68418.m07297 26S proteasome AAA-ATPase subunit (RPT3)
identical to 26S proteasome AAA-ATPase subunit RPT3
GI:6652882 from [Arabidopsis thaliana]
Length = 408
Score = 132 bits (320), Expect = 2e-31
Identities = 64/153 (41%), Positives = 96/153 (62%)
Frame = +2
Query: 203 VGEVVKPMDKKKVLVKVHPEGKFVVDLDKNVDINDVTANCRVALRNESYTLHKILPNKVD 382
+G+ ++ +D+ +V + V + ++ + + VAL S L +LP + D
Sbjct: 79 IGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEAD 138
Query: 383 PLVSLMMVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPP 562
+SL+ + PD +Y +GG D Q +EI+E +ELP+ H EL+ +GI P+GVLLYGPP
Sbjct: 139 SSISLLSQSEKPDVSYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPP 198
Query: 563 GTGKTLLARAVAHHTECTFIRVSGSELVQKFIG 661
GTGKT+LA+AVA+HT FIRV GSE VQK++G
Sbjct: 199 GTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLG 231
Score = 29.9 bits (64), Expect = 1.9
Identities = 11/20 (55%), Positives = 19/20 (95%)
Frame = +1
Query: 691 FVMAREHAPSIIFMDEINSI 750
F +A+E+AP+IIF+DE+++I
Sbjct: 241 FRLAKENAPAIIFIDEVDAI 260
>At3g05530.1 68416.m00606 26S proteasome AAA-ATPase subunit (RPT5a)
identical to GB:AAF22525 GI:6652886 from [Arabidopsis
thaliana]
Length = 424
Score = 124 bits (299), Expect = 6e-29
Identities = 59/123 (47%), Positives = 81/123 (65%)
Frame = +2
Query: 293 VDINDVTANCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDKQIKEIK 472
VD + + V + +SY + LP++ D V M V++ P Y +GGL+KQI+E+
Sbjct: 125 VDPDSLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELV 184
Query: 473 EVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQK 652
E I LP+ H E F+ LG+ PKGVLLYGPPGTGKTL+ARA A T TF++++G +LVQ
Sbjct: 185 EAIVLPMTHKERFEKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQM 244
Query: 653 FIG 661
FIG
Sbjct: 245 FIG 247
Score = 30.3 bits (65), Expect = 1.4
Identities = 13/27 (48%), Positives = 20/27 (74%)
Frame = +1
Query: 670 AEWCESSFVMAREHAPSIIFMDEINSI 750
A+ +F +A+E AP IIF+DEI++I
Sbjct: 250 AKLVRDAFQLAKEKAPCIIFIDEIDAI 276
>At1g09100.1 68414.m01016 26S protease regulatory subunit 6A,
putative identical to SP:O04019 from [Arabidopsis
thaliana]
Length = 423
Score = 124 bits (299), Expect = 6e-29
Identities = 60/123 (48%), Positives = 81/123 (65%)
Frame = +2
Query: 293 VDINDVTANCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDKQIKEIK 472
VD + + V + +SY + LP++ D V M V++ P Y +GGL+KQI+E+
Sbjct: 124 VDPDTLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELV 183
Query: 473 EVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQK 652
E I LP+ H E F+ LGI PKGVLLYGPPGTGKTL+ARA A T TF++++G +LVQ
Sbjct: 184 EAIVLPMTHKEQFEKLGIRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQM 243
Query: 653 FIG 661
FIG
Sbjct: 244 FIG 246
Score = 30.3 bits (65), Expect = 1.4
Identities = 12/27 (44%), Positives = 21/27 (77%)
Frame = +1
Query: 670 AEWCESSFVMAREHAPSIIFMDEINSI 750
A+ +F++A+E +P IIF+DEI++I
Sbjct: 249 AKLVRDAFLLAKEKSPCIIFIDEIDAI 275
>At3g09840.1 68416.m01174 cell division cycle protein 48 (CDC48A)
(CDC48) identical to SP|P54609 Cell division cycle
protein 48 homolog {Arabidopsis thaliana}
Length = 809
Score = 107 bits (258), Expect = 6e-24
Identities = 45/94 (47%), Positives = 70/94 (74%)
Frame = +2
Query: 407 EKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLA 586
E++ D Y+ VGG+ KQ+ +I+E++ELP++HP+LF ++G+ PKG+LLYGPPG+GKTL+A
Sbjct: 199 ERLDDVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIA 258
Query: 587 RAVAHHTECTFIRVSGSELVQKFIGRRQQNGARA 688
RAVA+ T F ++G E++ K G + N +A
Sbjct: 259 RAVANETGAFFFCINGPEIMSKLAGESESNLRKA 292
Score = 98.7 bits (235), Expect = 4e-21
Identities = 52/136 (38%), Positives = 83/136 (61%), Gaps = 1/136 (0%)
Frame = +2
Query: 272 VVDL-DKNVDINDVTANCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGL 448
V+DL D ++D + + +A+ NE + H L N +P V +VP+ ++ +GGL
Sbjct: 432 VIDLEDDSIDAEILNS---MAVTNEHF--HTALGNS-NPSALRETVVEVPNVSWNDIGGL 485
Query: 449 DKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRV 628
+ +E++E ++ PV+HPE F+ G++ KGVL YGPPG GKTLLA+A+A+ + FI V
Sbjct: 486 ENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISV 545
Query: 629 SGSELVQKFIGRRQQN 676
G EL+ + G + N
Sbjct: 546 KGPELLTMWFGESEAN 561
Score = 29.9 bits (64), Expect = 1.9
Identities = 20/63 (31%), Positives = 32/63 (50%)
Frame = +1
Query: 562 GHWKDIISSCCRSPH*VYFHTCFWIRIGTKIYWEKAAEWCESSFVMAREHAPSIIFMDEI 741
G K +I+ + +F I +K+ E + +F A ++APSIIF+DEI
Sbjct: 251 GSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESN-LRKAFEEAEKNAPSIIFIDEI 309
Query: 742 NSI 750
+SI
Sbjct: 310 DSI 312
>At5g03340.1 68418.m00286 cell division cycle protein 48, putative /
CDC48, putative very strong similarity to SP|P54609 Cell
division cycle protein 48 homolog {Arabidopsis
thaliana}; contains Pfam profiles PF00004: ATPase AAA
family, PF02359: Cell division protein 48 (CDC48)
N-terminal domain; supporting cDNA
gi|26449351|dbj|AK117125.1|
Length = 810
Score = 106 bits (254), Expect = 2e-23
Identities = 44/94 (46%), Positives = 70/94 (74%)
Frame = +2
Query: 407 EKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLA 586
E++ + Y+ VGG+ KQ+ +I+E++ELP++HP+LF ++G+ PKG+LLYGPPG+GKTL+A
Sbjct: 199 ERLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIA 258
Query: 587 RAVAHHTECTFIRVSGSELVQKFIGRRQQNGARA 688
RAVA+ T F ++G E++ K G + N +A
Sbjct: 259 RAVANETGAFFFCINGPEIMSKLAGESESNLRKA 292
Score = 100 bits (240), Expect = 9e-22
Identities = 53/136 (38%), Positives = 84/136 (61%), Gaps = 1/136 (0%)
Frame = +2
Query: 272 VVDL-DKNVDINDVTANCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGL 448
V+DL D ++D + + +A+ NE + H L N +P V +VP+ ++E +GGL
Sbjct: 432 VIDLEDDSIDAEILNS---MAVSNEHF--HTALGNS-NPSALRETVVEVPNVSWEDIGGL 485
Query: 449 DKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRV 628
+ +E++E ++ PV+HPE F+ G++ KGVL YGPPG GKTLLA+A+A+ + FI V
Sbjct: 486 ENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISV 545
Query: 629 SGSELVQKFIGRRQQN 676
G EL+ + G + N
Sbjct: 546 KGPELLTMWFGESEAN 561
Score = 29.9 bits (64), Expect = 1.9
Identities = 20/63 (31%), Positives = 32/63 (50%)
Frame = +1
Query: 562 GHWKDIISSCCRSPH*VYFHTCFWIRIGTKIYWEKAAEWCESSFVMAREHAPSIIFMDEI 741
G K +I+ + +F I +K+ E + +F A ++APSIIF+DEI
Sbjct: 251 GSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESN-LRKAFEEAEKNAPSIIFIDEI 309
Query: 742 NSI 750
+SI
Sbjct: 310 DSI 312
>At3g53230.1 68416.m05865 cell division cycle protein 48, putative /
CDC48, putative very strong similarity to SP|P54609 Cell
division cycle protein 48 homolog {Arabidopsis
thaliana}; contains Pfam profiles PF00004: ATPase AAA
family, PF02359: Cell division protein 48 (CDC48)
N-terminal domain
Length = 815
Score = 106 bits (254), Expect = 2e-23
Identities = 44/94 (46%), Positives = 70/94 (74%)
Frame = +2
Query: 407 EKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLA 586
E++ + Y+ VGG+ KQ+ +I+E++ELP++HP+LF ++G+ PKG+LLYGPPG+GKTL+A
Sbjct: 200 ERLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIA 259
Query: 587 RAVAHHTECTFIRVSGSELVQKFIGRRQQNGARA 688
RAVA+ T F ++G E++ K G + N +A
Sbjct: 260 RAVANETGAFFFCINGPEIMSKLAGESESNLRKA 293
Score = 96.7 bits (230), Expect = 1e-20
Identities = 51/135 (37%), Positives = 82/135 (60%)
Frame = +2
Query: 272 VVDLDKNVDINDVTANCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLD 451
V+DLD +I+ N +A+ N+ + L N +P V +VP+ ++E +GGL+
Sbjct: 433 VIDLDDE-EIDAEILNS-MAVSNDHF--QTALGNS-NPSALRETVVEVPNVSWEDIGGLE 487
Query: 452 KQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVS 631
+E++E ++ PV+HPE F+ G++ KGVL YGPPG GKTLLA+A+A+ + FI +
Sbjct: 488 NVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISIK 547
Query: 632 GSELVQKFIGRRQQN 676
G EL+ + G + N
Sbjct: 548 GPELLTMWFGESEAN 562
Score = 29.9 bits (64), Expect = 1.9
Identities = 20/63 (31%), Positives = 32/63 (50%)
Frame = +1
Query: 562 GHWKDIISSCCRSPH*VYFHTCFWIRIGTKIYWEKAAEWCESSFVMAREHAPSIIFMDEI 741
G K +I+ + +F I +K+ E + +F A ++APSIIF+DEI
Sbjct: 252 GSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESN-LRKAFEEAEKNAPSIIFIDEI 310
Query: 742 NSI 750
+SI
Sbjct: 311 DSI 313
>At1g03000.1 68414.m00271 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family ('A'TPases
'A'ssociated with diverse cellular 'A'ctivities)
Length = 941
Score = 87.4 bits (207), Expect = 9e-18
Identities = 42/95 (44%), Positives = 61/95 (64%)
Frame = +2
Query: 392 SLMMVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTG 571
S + KVP+ ++ VGGL+ I + ++LP+ H +LF + G+ + GVLLYGPPGTG
Sbjct: 645 SALGAPKVPNVKWDDVGGLEDVKTSILDTVQLPLLHKDLFSS-GLRKRSGVLLYGPPGTG 703
Query: 572 KTLLARAVAHHTECTFIRVSGSELVQKFIGRRQQN 676
KTLLA+AVA F+ V G EL+ +IG ++N
Sbjct: 704 KTLLAKAVATECSLNFLSVKGPELINMYIGESEKN 738
>At5g15250.1 68418.m01786 FtsH protease, putative similar to
FtsH-like protein Pftf precursor GI:4325041 from
[Nicotiana tabacum]
Length = 687
Score = 84.6 bits (200), Expect = 6e-17
Identities = 40/79 (50%), Positives = 55/79 (69%)
Frame = +2
Query: 425 TYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHH 604
T+E V G+D+ ++ +E++E +K PE F ALG PKGVLL GPPGTGKTLLA+A+A
Sbjct: 221 TFEDVAGVDEAKQDFEEIVEF-LKTPEKFSALGAKIPKGVLLTGPPGTGKTLLAKAIAGE 279
Query: 605 TECTFIRVSGSELVQKFIG 661
F +SGSE ++ F+G
Sbjct: 280 AGVPFFSLSGSEFIEMFVG 298
>At3g56690.1 68416.m06306 calmodulin-binding protein identical to
calmodulin-binding protein GI:6760428 from [Arabidopsis
thaliana]
Length = 1022
Score = 84.2 bits (199), Expect = 8e-17
Identities = 37/100 (37%), Positives = 59/100 (59%)
Frame = +2
Query: 374 KVDPLVSLMMVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLY 553
K+ P ++ +VP +E VGG ++ ++ E +E P KH + F +G P G+L++
Sbjct: 705 KIRPSAMREVILEVPKVNWEDVGGQNEVKNQLMEAVEWPQKHQDAFKRIGTRPPSGILMF 764
Query: 554 GPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGRRQQ 673
GPPG KTL+ARAVA + F+ V G EL K++G ++
Sbjct: 765 GPPGCSKTLMARAVASEAKLNFLAVKGPELFSKWVGESEK 804
Score = 66.5 bits (155), Expect = 2e-11
Identities = 30/79 (37%), Positives = 50/79 (63%)
Frame = +2
Query: 437 VGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT 616
+GGL K+ ++++I+ L +LG+ KGVL++GPPGTGKT LAR A H+
Sbjct: 387 LGGLSKEYAILRDIIDSSSIKNSL-SSLGLRPTKGVLIHGPPGTGKTSLARTFARHSGVN 445
Query: 617 FIRVSGSELVQKFIGRRQQ 673
F V+G E++ +++G ++
Sbjct: 446 FFSVNGPEIISQYLGESEK 464
Score = 31.1 bits (67), Expect = 0.82
Identities = 14/22 (63%), Positives = 17/22 (77%)
Frame = +1
Query: 685 SSFVMAREHAPSIIFMDEINSI 750
S F AR +APSIIF DEI+S+
Sbjct: 808 SLFAKARANAPSIIFFDEIDSL 829
>At2g30950.1 68415.m03775 FtsH protease (VAR2) identical to zinc
dependent protease VAR2 GI:7650138 from [Arabidopsis
thaliana]
Length = 695
Score = 83.4 bits (197), Expect = 1e-16
Identities = 40/79 (50%), Positives = 54/79 (68%)
Frame = +2
Query: 425 TYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHH 604
T++ V G+D+ ++ EV+E +K PE F A+G PKGVLL GPPGTGKTLLA+A+A
Sbjct: 225 TFDDVAGVDEAKQDFMEVVEF-LKKPERFTAVGAKIPKGVLLIGPPGTGKTLLAKAIAGE 283
Query: 605 TECTFIRVSGSELVQKFIG 661
F +SGSE V+ F+G
Sbjct: 284 AGVPFFSISGSEFVEMFVG 302
Score = 27.9 bits (59), Expect = 7.6
Identities = 10/20 (50%), Positives = 17/20 (85%)
Frame = +1
Query: 691 FVMAREHAPSIIFMDEINSI 750
F A+E+AP I+F+DEI+++
Sbjct: 312 FKKAKENAPCIVFVDEIDAV 331
>At1g06430.1 68414.m00680 FtsH protease, putative similar to zinc
dependent protease GI:7650138 from [Arabidopsis
thaliana]
Length = 685
Score = 83.4 bits (197), Expect = 1e-16
Identities = 40/79 (50%), Positives = 54/79 (68%)
Frame = +2
Query: 425 TYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHH 604
T++ V G+D+ ++ EV+E +K PE F A+G PKGVLL GPPGTGKTLLA+A+A
Sbjct: 218 TFDDVAGVDEAKQDFMEVVEF-LKKPERFTAVGARIPKGVLLVGPPGTGKTLLAKAIAGE 276
Query: 605 TECTFIRVSGSELVQKFIG 661
F +SGSE V+ F+G
Sbjct: 277 AGVPFFSISGSEFVEMFVG 295
Score = 27.9 bits (59), Expect = 7.6
Identities = 10/20 (50%), Positives = 17/20 (85%)
Frame = +1
Query: 691 FVMAREHAPSIIFMDEINSI 750
F A+E+AP I+F+DEI+++
Sbjct: 305 FKKAKENAPCIVFVDEIDAV 324
>At3g01610.1 68416.m00092 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family ('A'TPases
'A'ssociated with diverse cellular 'A'ctivities)
Length = 820
Score = 81.8 bits (193), Expect = 4e-16
Identities = 35/86 (40%), Positives = 53/86 (61%)
Frame = +2
Query: 413 VPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARA 592
VPD ++ VGGLD + I P+K P+++ A G+ G LLYGPPG GKTL+A+A
Sbjct: 522 VPDVKWDDVGGLDHLRLQFNRYIVRPIKKPDIYKAFGVDLETGFLLYGPPGCGKTLIAKA 581
Query: 593 VAHHTECTFIRVSGSELVQKFIGRRQ 670
A+ F+ + G+EL+ K++G +
Sbjct: 582 AANEAGANFMHIKGAELLNKYVGESE 607
Score = 72.1 bits (169), Expect = 4e-13
Identities = 31/91 (34%), Positives = 53/91 (58%)
Frame = +2
Query: 404 VEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLL 583
VE T++ GG+ K + E++ + P+ +PE F +G+ P G+L +GPPG GKT L
Sbjct: 224 VEGTKGPTFKDFGGIKKILDELEMNVLFPILNPEPFKKIGVKPPSGILFHGPPGCGKTKL 283
Query: 584 ARAVAHHTECTFIRVSGSELVQKFIGRRQQN 676
A A+A+ F ++S +E++ G ++N
Sbjct: 284 ANAIANEAGVPFYKISATEVISGVSGASEEN 314
>At4g02480.1 68417.m00335 AAA-type ATPase family protein contains Pfam
domain, PF00004: ATPase, AAA family; similar to Spastin
(Swiss-Prot:Q9UBP0) [Homo sapiens] and Spastin (Fragment)
(Swiss-Prot:Q9QYY8) [Mus musculus]; similar to
mitochondrial sorting protein 1 (MSP1) protein
(TAT-binding homolog 4) (Swiss-Prot:P28737)
[Saccharomyces cerevisiae]
Length = 1265
Score = 81.4 bits (192), Expect = 6e-16
Identities = 43/121 (35%), Positives = 75/121 (61%), Gaps = 7/121 (5%)
Frame = +2
Query: 332 LRNESYTLHKILPNKV--DPLVSLMMVEKVPDS----TYEMVGGLDKQIKEIKEVIELPV 493
++NE+ +L K L + V + ++ + +P S +++ +G L+ + +KE++ LP+
Sbjct: 924 IQNENKSLKKSLKDVVTENEFEKKLLSDVIPPSDIGVSFDDIGALENVKETLKELVMLPL 983
Query: 494 KHPELFDALGIAQP-KGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGRRQ 670
+ PELFD + +P KG+LL+GPPGTGKT+LA+AVA FI +S S + K+ G +
Sbjct: 984 QRPELFDKGQLTKPTKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGE 1043
Query: 671 Q 673
+
Sbjct: 1044 K 1044
Score = 28.7 bits (61), Expect = 4.4
Identities = 11/35 (31%), Positives = 25/35 (71%)
Frame = +1
Query: 646 TKIYWEKAAEWCESSFVMAREHAPSIIFMDEINSI 750
T ++ + ++ ++ F +A + APS+IF+DE++S+
Sbjct: 1035 TSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSM 1069
>At4g24860.1 68417.m03559 AAA-type ATPase family protein contains Pfam
profile PF00004: ATPase, AAA family
Length = 1122
Score = 81.0 bits (191), Expect = 8e-16
Identities = 39/97 (40%), Positives = 64/97 (65%), Gaps = 1/97 (1%)
Frame = +2
Query: 386 LVSLMMVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQP-KGVLLYGPP 562
L+S +++ D T++ +G L+K +KE++ LP++ PELF + +P KG+LL+GPP
Sbjct: 805 LLSDVILPSDIDVTFDDIGALEKVKDILKELVMLPLQRPELFCKGELTKPCKGILLFGPP 864
Query: 563 GTGKTLLARAVAHHTECTFIRVSGSELVQKFIGRRQQ 673
GTGKT+LA+AVA + FI +S S + K+ G ++
Sbjct: 865 GTGKTMLAKAVAKEADANFINISMSSITSKWFGEGEK 901
Score = 27.9 bits (59), Expect = 7.6
Identities = 10/35 (28%), Positives = 25/35 (71%)
Frame = +1
Query: 646 TKIYWEKAAEWCESSFVMAREHAPSIIFMDEINSI 750
T ++ + ++ ++ F +A + +PS+IF+DE++S+
Sbjct: 892 TSKWFGEGEKYVKAVFSLASKMSPSVIFVDEVDSM 926
>At2g03670.1 68415.m00326 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family ('A'TPases
'A'ssociated with diverse cellular 'A'ctivities)
Length = 603
Score = 80.6 bits (190), Expect = 1e-15
Identities = 36/101 (35%), Positives = 63/101 (62%)
Frame = +2
Query: 359 KILPNKVDPLVSLMMVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPK 538
KI + V P ++ + ++P T++ VGGL K++++ +E P+KH F +GI+ +
Sbjct: 262 KIAKSVVGPSINRGITVEIPKVTWDDVGGLKDLKKKLQQAVEWPIKHSAAFVKMGISPMR 321
Query: 539 GVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIG 661
G+LL+GPPG KT LA+A A+ + +F +S +EL ++G
Sbjct: 322 GILLHGPPGCSKTTLAKAAANAAQASFFSLSCAELFSMYVG 362
Score = 61.7 bits (143), Expect = 5e-10
Identities = 28/79 (35%), Positives = 47/79 (59%)
Frame = +2
Query: 437 VGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT 616
+GG ++ ++ ++E+I P ++P LG+ P+G+LLYGPPGTGKT L RAV +
Sbjct: 24 IGGNERALQALRELIIFPFRYPLEARTLGLKWPRGLLLYGPPGTGKTSLVRAVVQECDAH 83
Query: 617 FIRVSGSELVQKFIGRRQQ 673
I +S + + G ++
Sbjct: 84 LIVLSPHSVHRAHAGESEK 102
>At5g53540.1 68418.m06653 MSP1 protein, putative /
intramitochondrial sorting protein, putative similar to
Swiss-Prot:P28737 MSP1 protein (TAT-binding homolog 4)
[Saccharomyces cerevisiae]; contains Pfam domain,
PF00004: ATPase, AAA family
Length = 403
Score = 80.2 bits (189), Expect = 1e-15
Identities = 40/86 (46%), Positives = 56/86 (65%), Gaps = 1/86 (1%)
Frame = +2
Query: 419 DSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQP-KGVLLYGPPGTGKTLLARAV 595
D + +GGL+ + + E++ LP+K PELF + P KGVLLYGPPGTGKT+LA+A+
Sbjct: 83 DVEFGSIGGLESIKQALYELVILPLKRPELFAYGKLLGPQKGVLLYGPPGTGKTMLAKAI 142
Query: 596 AHHTECTFIRVSGSELVQKFIGRRQQ 673
A +E FI V S L+ K+ G Q+
Sbjct: 143 ARESEAVFINVKVSNLMSKWFGDAQK 168
>At4g28000.1 68417.m04016 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 726
Score = 79.4 bits (187), Expect = 2e-15
Identities = 37/90 (41%), Positives = 63/90 (70%), Gaps = 1/90 (1%)
Frame = +2
Query: 425 TYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQP-KGVLLYGPPGTGKTLLARAVAH 601
T+ +G LD+ + ++E++ LP++ P+LF G+ +P +G+LL+GPPGTGKT++A+A+A+
Sbjct: 412 TFADIGSLDETKESLQELVMLPLRRPDLFKG-GLLKPCRGILLFGPPGTGKTMMAKAIAN 470
Query: 602 HTECTFIRVSGSELVQKFIGRRQQNGARAL 691
+FI VS S + K+ G ++N RAL
Sbjct: 471 EAGASFINVSMSTITSKWFGEDEKN-VRAL 499
>At1g64110.2 68414.m07264 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 829
Score = 79.4 bits (187), Expect = 2e-15
Identities = 38/90 (42%), Positives = 63/90 (70%), Gaps = 1/90 (1%)
Frame = +2
Query: 425 TYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQP-KGVLLYGPPGTGKTLLARAVAH 601
T++ +G LD+ + ++E++ LP++ P+LF G+ +P +G+LL+GPPGTGKT+LA+A+A
Sbjct: 519 TFKDIGALDEIKESLQELVMLPLRRPDLFTG-GLLKPCRGILLFGPPGTGKTMLAKAIAK 577
Query: 602 HTECTFIRVSGSELVQKFIGRRQQNGARAL 691
+FI VS S + K+ G ++N RAL
Sbjct: 578 EAGASFINVSMSTITSKWFGEDEKN-VRAL 606
>At1g64110.1 68414.m07263 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 824
Score = 79.4 bits (187), Expect = 2e-15
Identities = 38/90 (42%), Positives = 63/90 (70%), Gaps = 1/90 (1%)
Frame = +2
Query: 425 TYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQP-KGVLLYGPPGTGKTLLARAVAH 601
T++ +G LD+ + ++E++ LP++ P+LF G+ +P +G+LL+GPPGTGKT+LA+A+A
Sbjct: 514 TFKDIGALDEIKESLQELVMLPLRRPDLFTG-GLLKPCRGILLFGPPGTGKTMLAKAIAK 572
Query: 602 HTECTFIRVSGSELVQKFIGRRQQNGARAL 691
+FI VS S + K+ G ++N RAL
Sbjct: 573 EAGASFINVSMSTITSKWFGEDEKN-VRAL 601
>At2g34560.2 68415.m04246 katanin, putative similar to katanin p60
subunit [Strongylocentrotus purpuratus] GI:3098603;
contains Pfam profile PF00004: ATPase AAA family
Length = 393
Score = 78.2 bits (184), Expect = 5e-15
Identities = 36/82 (43%), Positives = 54/82 (65%)
Frame = +2
Query: 416 PDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAV 595
P+ +E + GL+ K +KE + +P+K+P F+ L + KG+LL+GPPGTGKT+LA+AV
Sbjct: 107 PNIKWESIKGLENAKKLLKEAVVMPIKYPTYFNGL-LTPWKGILLFGPPGTGKTMLAKAV 165
Query: 596 AHHTECTFIRVSGSELVQKFIG 661
A TF +S S +V K+ G
Sbjct: 166 ATECNTTFFNISASSVVSKWRG 187
Score = 31.9 bits (69), Expect = 0.47
Identities = 13/20 (65%), Positives = 17/20 (85%)
Frame = +1
Query: 691 FVMAREHAPSIIFMDEINSI 750
F +AR HAPS IF+DEI++I
Sbjct: 197 FDLARHHAPSTIFLDEIDAI 216
>At2g34560.1 68415.m04245 katanin, putative similar to katanin p60
subunit [Strongylocentrotus purpuratus] GI:3098603;
contains Pfam profile PF00004: ATPase AAA family
Length = 384
Score = 78.2 bits (184), Expect = 5e-15
Identities = 36/82 (43%), Positives = 54/82 (65%)
Frame = +2
Query: 416 PDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAV 595
P+ +E + GL+ K +KE + +P+K+P F+ L + KG+LL+GPPGTGKT+LA+AV
Sbjct: 98 PNIKWESIKGLENAKKLLKEAVVMPIKYPTYFNGL-LTPWKGILLFGPPGTGKTMLAKAV 156
Query: 596 AHHTECTFIRVSGSELVQKFIG 661
A TF +S S +V K+ G
Sbjct: 157 ATECNTTFFNISASSVVSKWRG 178
Score = 31.9 bits (69), Expect = 0.47
Identities = 13/20 (65%), Positives = 17/20 (85%)
Frame = +1
Query: 691 FVMAREHAPSIIFMDEINSI 750
F +AR HAPS IF+DEI++I
Sbjct: 188 FDLARHHAPSTIFLDEIDAI 207
>At2g45500.1 68415.m05659 AAA-type ATPase family protein similar to
SP|Q9QYY8 Spastin (Fragment) {Mus musculus}; contains
Pfam profiles PF00004: ATPase AAA family, PF04212: MIT
domain
Length = 487
Score = 77.8 bits (183), Expect = 7e-15
Identities = 37/105 (35%), Positives = 67/105 (63%), Gaps = 1/105 (0%)
Frame = +2
Query: 362 ILPNKVDPLVSLMMVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQP-K 538
+ +K+ +++ +V++ P ++ V GL+ + + E++ LP K +LF G+ +P +
Sbjct: 193 VYDDKLVEMINTTIVDRSPSVKWDDVAGLNGAKQALLEMVILPAKRRDLFT--GLRRPAR 250
Query: 539 GVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGRRQQ 673
G+LL+GPPG GKT+LA+AVA ++ TF VS S L K++G ++
Sbjct: 251 GLLLFGPPGNGKTMLAKAVASESQATFFNVSASSLTSKWVGEAEK 295
Score = 28.3 bits (60), Expect = 5.8
Identities = 13/29 (44%), Positives = 20/29 (68%)
Frame = +1
Query: 664 KAAEWCESSFVMAREHAPSIIFMDEINSI 750
+A + ++ F +A PS+IFMDEI+SI
Sbjct: 292 EAEKLVKTLFQVAISRQPSVIFMDEIDSI 320
>At4g23940.1 68417.m03443 FtsH protease, putative contains
similarity to zinc dependent protease GI:7650138 from
[Arabidopsis thaliana]
Length = 946
Score = 77.4 bits (182), Expect = 9e-15
Identities = 34/75 (45%), Positives = 54/75 (72%)
Frame = +2
Query: 437 VGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT 616
V G+D+ + E++E+++ +K+P+LFD +GI P GVLL GPPG GKTL+A+A+A
Sbjct: 432 VAGIDEAVDELQELVKY-LKNPDLFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVP 490
Query: 617 FIRVSGSELVQKFIG 661
F +++GSE V+ +G
Sbjct: 491 FYQMAGSEFVEVLVG 505
>At1g50140.1 68414.m05623 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 640
Score = 77.4 bits (182), Expect = 9e-15
Identities = 36/79 (45%), Positives = 53/79 (67%), Gaps = 1/79 (1%)
Frame = +2
Query: 428 YEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQP-KGVLLYGPPGTGKTLLARAVAHH 604
+E +G L+ K + E++ LP++ PELF + +P KG+LL+GPPGTGKTLLA+A+A
Sbjct: 350 FEDIGALEDVKKALNELVILPMRRPELFARGNLLRPCKGILLFGPPGTGKTLLAKALATE 409
Query: 605 TECTFIRVSGSELVQKFIG 661
FI ++GS L K+ G
Sbjct: 410 AGANFISITGSTLTSKWFG 428
>At5g42270.1 68418.m05145 FtsH protease, putative similar to FtsH
protease GI:13183728 from [Medicago sativa]
Length = 704
Score = 76.6 bits (180), Expect = 2e-14
Identities = 40/87 (45%), Positives = 57/87 (65%), Gaps = 2/87 (2%)
Frame = +2
Query: 407 EKVPDS--TYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTL 580
++VP++ T+ V G D+ E++EV++ +K+P+ + ALG PKG LL GPPGTGKTL
Sbjct: 240 QEVPETGVTFGDVAGADQAKLELQEVVDF-LKNPDKYTALGAKIPKGCLLVGPPGTGKTL 298
Query: 581 LARAVAHHTECTFIRVSGSELVQKFIG 661
LARAVA F + SE V+ F+G
Sbjct: 299 LARAVAGEAGVPFFSCAASEFVELFVG 325
>At3g19740.1 68416.m02499 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 439
Score = 76.6 bits (180), Expect = 2e-14
Identities = 35/79 (44%), Positives = 53/79 (67%), Gaps = 1/79 (1%)
Frame = +2
Query: 428 YEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQP-KGVLLYGPPGTGKTLLARAVAHH 604
++ +G L+ K + E++ LP++ PELF + +P KG+LL+GPPGTGKTLLA+A+A
Sbjct: 149 FDDIGALEHVKKTLNELVILPMRRPELFTRGNLLRPCKGILLFGPPGTGKTLLAKALATE 208
Query: 605 TECTFIRVSGSELVQKFIG 661
FI ++GS L K+ G
Sbjct: 209 AGANFISITGSTLTSKWFG 227
>At4g27680.1 68417.m03980 MSP1 protein, putative /
intramitochondrial sorting protein, putative similar to
Swiss-Prot:P28737 MSP1 protein (TAT-binding homolog 4)
[Saccharomyces cerevisiae]; contains Pfam domain,
PF00004: ATPase, AAA family
Length = 398
Score = 76.2 bits (179), Expect = 2e-14
Identities = 39/86 (45%), Positives = 55/86 (63%), Gaps = 1/86 (1%)
Frame = +2
Query: 419 DSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQP-KGVLLYGPPGTGKTLLARAV 595
D + +GGL+ + + E++ LP+K PELF + P KGVLLYGPPGTGKT+LA+A+
Sbjct: 80 DVEFGSIGGLETIKQALYELVILPLKRPELFAYGKLLGPQKGVLLYGPPGTGKTMLAKAI 139
Query: 596 AHHTECTFIRVSGSELVQKFIGRRQQ 673
A + FI V S L+ K+ G Q+
Sbjct: 140 AKESGAVFINVRVSNLMSKWFGDAQK 165
>At3g47060.1 68416.m05110 FtsH protease, putative contains
similarity to FtsH protease GI:13183728 from [Medicago
sativa]
Length = 802
Score = 76.2 bits (179), Expect = 2e-14
Identities = 37/79 (46%), Positives = 54/79 (68%)
Frame = +2
Query: 425 TYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHH 604
T+ V G+D+ +E++E++E +++PE + LG P+GVLL G PGTGKTLLA+AVA
Sbjct: 323 TFADVAGVDEAKEELEEIVEF-LRNPEKYVRLGARPPRGVLLVGLPGTGKTLLAKAVAGE 381
Query: 605 TECTFIRVSGSELVQKFIG 661
E FI S SE V+ ++G
Sbjct: 382 AEVPFISCSASEFVELYVG 400
Score = 30.3 bits (65), Expect = 1.4
Identities = 20/69 (28%), Positives = 32/69 (46%)
Frame = +1
Query: 544 LTVWASGHWKDIISSCCRSPH*VYFHTCFWIRIGTKIYWEKAAEWCESSFVMAREHAPSI 723
L V G K +++ V F +C ++Y A F A++ APSI
Sbjct: 362 LLVGLPGTGKTLLAKAVAGEAEVPFISCSASEF-VELYVGMGASRVRDLFARAKKEAPSI 420
Query: 724 IFMDEINSI 750
IF+DEI+++
Sbjct: 421 IFIDEIDAV 429
>At5g58870.1 68418.m07376 FtsH protease, putative contains
similarity to cell division protein FtsH homolog 3
SP:P73437 (EC 3.4.24.-) [strain PCC6803] {Synechocystis
sp.}
Length = 806
Score = 75.4 bits (177), Expect = 4e-14
Identities = 36/79 (45%), Positives = 55/79 (69%)
Frame = +2
Query: 425 TYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHH 604
T+ V G+D+ +E++E++E +K+P+ + LG P+GVLL G PGTGKTLLA+AVA
Sbjct: 327 TFADVAGVDEAKEELEEIVEF-LKNPDRYVRLGARPPRGVLLVGLPGTGKTLLAKAVAGE 385
Query: 605 TECTFIRVSGSELVQKFIG 661
++ FI S SE V+ ++G
Sbjct: 386 SDVPFISCSASEFVELYVG 404
Score = 30.7 bits (66), Expect = 1.1
Identities = 20/69 (28%), Positives = 32/69 (46%)
Frame = +1
Query: 544 LTVWASGHWKDIISSCCRSPH*VYFHTCFWIRIGTKIYWEKAAEWCESSFVMAREHAPSI 723
L V G K +++ V F +C ++Y A F A++ APSI
Sbjct: 366 LLVGLPGTGKTLLAKAVAGESDVPFISCSASEF-VELYVGMGASRVRDLFARAKKEAPSI 424
Query: 724 IFMDEINSI 750
IF+DEI+++
Sbjct: 425 IFIDEIDAV 433
>At1g50250.1 68414.m05634 cell division protein ftsH homolog 1,
chloroplast (FTSH1) (FTSH) identical to SP:Q39102 Cell
division protein ftsH homolog 1, chloroplast
precursor (EC 3.4.24.-) [Arabidopsis thaliana]
Length = 716
Score = 75.4 bits (177), Expect = 4e-14
Identities = 39/87 (44%), Positives = 57/87 (65%), Gaps = 2/87 (2%)
Frame = +2
Query: 407 EKVPDS--TYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTL 580
++VP++ ++ V G D+ E++EV++ +K+P+ + ALG PKG LL GPPGTGKTL
Sbjct: 252 QEVPETGVSFADVAGADQAKLELQEVVDF-LKNPDKYTALGAKIPKGCLLVGPPGTGKTL 310
Query: 581 LARAVAHHTECTFIRVSGSELVQKFIG 661
LARAVA F + SE V+ F+G
Sbjct: 311 LARAVAGEAGVPFFSCAASEFVELFVG 337
>At1g02890.1 68414.m00256 AAA-type ATPase family protein contains Pfam
domain, PF00004: ATPase, AAA family; similar to
mitochondrial sorting protein 1 (MSP1) (TAT-binding
homolog 4) (Swiss-Prot:P28737) [Saccharomyces cerevisiae]
Length = 1252
Score = 74.9 bits (176), Expect = 5e-14
Identities = 41/121 (33%), Positives = 71/121 (58%), Gaps = 7/121 (5%)
Frame = +2
Query: 332 LRNESYTLHKILPNKV--DPLVSLMMVEKVPDS----TYEMVGGLDKQIKEIKEVIELPV 493
++NE+ + K L + V + ++ + +P S ++ +G L+ +KE++ LP+
Sbjct: 911 IQNENKSTKKSLKDVVTENEFEKKLLSDVIPPSDIGVSFSDIGALENVKDTLKELVMLPL 970
Query: 494 KHPELFDALGIAQP-KGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGRRQ 670
+ PELF + +P KG+LL+GPPGTGKT+LA+AVA FI +S S + K+ G +
Sbjct: 971 QRPELFGKGQLTKPTKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGE 1030
Query: 671 Q 673
+
Sbjct: 1031 K 1031
Score = 28.7 bits (61), Expect = 4.4
Identities = 11/35 (31%), Positives = 25/35 (71%)
Frame = +1
Query: 646 TKIYWEKAAEWCESSFVMAREHAPSIIFMDEINSI 750
T ++ + ++ ++ F +A + APS+IF+DE++S+
Sbjct: 1022 TSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSM 1056
>At2g27600.1 68415.m03346 AAA-type ATPase family protein / vacuolar
sorting protein-related similar to SP|P46467 SKD1
protein (Vacuolar sorting protein 4b) {Mus musculus};
contains Pfam profiles PF00004: ATPase AAA family,
PF04212: MIT domain
Length = 435
Score = 73.7 bits (173), Expect = 1e-13
Identities = 38/92 (41%), Positives = 58/92 (63%), Gaps = 1/92 (1%)
Frame = +2
Query: 401 MVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQP-KGVLLYGPPGTGKT 577
+V + P+ + V GL+ + ++E + LPVK P+ F G +P + LLYGPPGTGK+
Sbjct: 122 IVREKPNIKWSDVAGLESAKQALQEAVILPVKFPQFFT--GKRRPWRAFLLYGPPGTGKS 179
Query: 578 LLARAVAHHTECTFIRVSGSELVQKFIGRRQQ 673
LA+AVA + TF VS S+LV K++G ++
Sbjct: 180 YLAKAVATEADSTFFSVSSSDLVSKWMGESEK 211
Score = 33.9 bits (74), Expect = 0.12
Identities = 15/20 (75%), Positives = 18/20 (90%)
Frame = +1
Query: 691 FVMAREHAPSIIFMDEINSI 750
F MARE APSIIF+DEI+S+
Sbjct: 217 FEMARESAPSIIFVDEIDSL 236
>At1g05910.1 68414.m00620 cell division cycle protein 48-related /
CDC48-related similar to SP|P54609 Cell division cycle
protein 48 homolog {Arabidopsis thaliana}; contains Pfam
profiles PF00004: ATPase AAA family, PF00439:
Bromodomain
Length = 1210
Score = 73.7 bits (173), Expect = 1e-13
Identities = 34/90 (37%), Positives = 58/90 (64%), Gaps = 5/90 (5%)
Frame = +2
Query: 419 DSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVA 598
D ++ +GGL + I ++KE++ P+ +PE F + I P+GVLL GPPGTGKTL+ARA+A
Sbjct: 377 DINFDDIGGLSEYINDLKEMVFFPLLYPEFFASYSITPPRGVLLCGPPGTGKTLIARALA 436
Query: 599 -----HHTECTFIRVSGSELVQKFIGRRQQ 673
+ +F G++++ K++G ++
Sbjct: 437 CAASKAGQKVSFYMRKGADVLSKWVGEAER 466
>At2g29080.1 68415.m03535 FtsH protease, putative similar to
AAA-metalloprotease FtsH [Pisum sativum] GI:15021761;
contains Pfam profiles PF01434: Peptidase family M41,
PF00004: ATPase AAA family
Length = 809
Score = 72.9 bits (171), Expect = 2e-13
Identities = 34/78 (43%), Positives = 52/78 (66%)
Frame = +2
Query: 428 YEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHT 607
++ V G D+ +EI E + +K+P+ ++ LG PKG LL GPPGTGKTLLA+A A +
Sbjct: 321 FKDVAGCDEAKQEIMEFVHF-LKNPKKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGES 379
Query: 608 ECTFIRVSGSELVQKFIG 661
F+ +SGS+ ++ F+G
Sbjct: 380 GVPFLSISGSDFMEMFVG 397
Score = 29.1 bits (62), Expect = 3.3
Identities = 13/20 (65%), Positives = 17/20 (85%)
Frame = +1
Query: 691 FVMAREHAPSIIFMDEINSI 750
F AR+ APSIIF+DEI++I
Sbjct: 407 FQEARQAAPSIIFIDEIDAI 426
>At1g80350.1 68414.m09406 katanin 1 (KTN1) identical to katanin 1
(KTN1) [Arabidopsis thaliana] GI:14133602
Length = 523
Score = 72.1 bits (169), Expect = 4e-13
Identities = 38/92 (41%), Positives = 57/92 (61%), Gaps = 1/92 (1%)
Frame = +2
Query: 401 MVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQP-KGVLLYGPPGTGKT 577
+++ P ++ V GL + + ++E + LP+ PE F GI +P KGVL++GPPGTGKT
Sbjct: 229 VLDSTPGVRWDDVAGLSEAKRLLEEAVVLPLWMPEYFQ--GIRRPWKGVLMFGPPGTGKT 286
Query: 578 LLARAVAHHTECTFIRVSGSELVQKFIGRRQQ 673
LLA+AVA TF VS + L K+ G ++
Sbjct: 287 LLAKAVATECGTTFFNVSSATLASKWRGESER 318
Score = 29.1 bits (62), Expect = 3.3
Identities = 12/20 (60%), Positives = 17/20 (85%)
Frame = +1
Query: 691 FVMAREHAPSIIFMDEINSI 750
F +AR +APS IF+DEI+S+
Sbjct: 324 FDLARAYAPSTIFIDEIDSL 343
>At2g26140.1 68415.m03137 FtsH protease, putative contains
similarity to YME1 GI:295582, a member of the
ftsH-SEC18-PAS1-CDC48 family of putative ATPase-encoding
genes from [Saccharomyces cerevisiae]
Length = 717
Score = 70.9 bits (166), Expect = 8e-13
Identities = 35/75 (46%), Positives = 48/75 (64%)
Frame = +2
Query: 437 VGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT 616
V G+D+ E++E++ ++ P+ F LG PKGVLL GPPGTGKT+LARA+A
Sbjct: 229 VKGVDEAKAELEEIVHY-LRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVP 287
Query: 617 FIRVSGSELVQKFIG 661
F SGSE + F+G
Sbjct: 288 FFSCSGSEFEEMFVG 302
>At5g64580.1 68418.m08116 AAA-type ATPase family protein similar to
zinc dependent protease [Arabidopsis thaliana]
GI:7650138; contains Pfam profile PF00004: ATPase AAA
family
Length = 855
Score = 70.1 bits (164), Expect = 1e-12
Identities = 33/79 (41%), Positives = 52/79 (65%)
Frame = +2
Query: 425 TYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHH 604
T++ G + +E++E++ + +K+ E F GI PKGVLL+GPPGTGKTLLA+A+A
Sbjct: 314 TFDDFAGQEYIKRELQEIVRI-LKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGE 372
Query: 605 TECTFIRVSGSELVQKFIG 661
F +G++ V+ F+G
Sbjct: 373 AGLPFFAANGTDFVEMFVG 391
Score = 31.1 bits (67), Expect = 0.82
Identities = 14/28 (50%), Positives = 20/28 (71%)
Frame = +1
Query: 667 AAEWCESSFVMAREHAPSIIFMDEINSI 750
AA + F +R +APSIIF+DEI++I
Sbjct: 393 AASRVKDLFASSRSYAPSIIFIDEIDAI 420
>At5g08470.1 68418.m00999 peroxisome biogenesis protein (PEX1)
identical to peroxisome biogenesis protein PEX1
[Arabidopsis thaliana] gi|12006272|gb|AAG44817; contains
Pfam profile PF00004: ATPase, AAA family; identical to
cDNA peroxisome biogenesis protein PEX1 (PEX1) mRNA,
partial cds GI:12006271
Length = 1130
Score = 70.1 bits (164), Expect = 1e-12
Identities = 37/82 (45%), Positives = 47/82 (57%)
Frame = +2
Query: 428 YEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHT 607
+E VGG+ IKE+IELP K P++F + VLLYGPPG GKT + A A
Sbjct: 843 WEDVGGVTDIKNAIKEMIELPSKFPKIFAKSPLRLRSNVLLYGPPGCGKTHIVGAAAAAC 902
Query: 608 ECTFIRVSGSELVQKFIGRRQQ 673
FI V G EL+ K+IG +Q
Sbjct: 903 SLRFISVKGPELLNKYIGASEQ 924
Score = 42.3 bits (95), Expect = 3e-04
Identities = 18/34 (52%), Positives = 23/34 (67%)
Frame = +2
Query: 509 FDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTE 610
F I P +L+YGPPG+GKT+LARA A + E
Sbjct: 585 FSKFKIPSPGHILIYGPPGSGKTILARAAAKYFE 618
>At1g07510.1 68414.m00804 FtsH protease, putative similar to
AAA-metalloprotease FtsH [Pisum sativum] GI:15021761;
contains Pfam profiles PF01434: Peptidase family M41,
PF00004: ATPase AAA family
Length = 813
Score = 70.1 bits (164), Expect = 1e-12
Identities = 32/78 (41%), Positives = 52/78 (66%)
Frame = +2
Query: 428 YEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHT 607
++ V G ++ +EI E + +++P+ ++ LG PKG LL GPPGTGKTLLA+A A +
Sbjct: 326 FKDVAGCEEAKQEIMEFVHF-LQNPKKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGES 384
Query: 608 ECTFIRVSGSELVQKFIG 661
F+ +SGS+ ++ F+G
Sbjct: 385 AVPFLSISGSDFMEMFVG 402
Score = 28.7 bits (61), Expect = 4.4
Identities = 13/20 (65%), Positives = 17/20 (85%)
Frame = +1
Query: 691 FVMAREHAPSIIFMDEINSI 750
F AR+ APSIIF+DEI++I
Sbjct: 412 FQEARQCAPSIIFIDEIDAI 431
>At5g53170.1 68418.m06610 FtsH protease, putative similar to
ATP-dependent metalloprotease FtsH1 GI:3600100 from [Mus
musculus]
Length = 806
Score = 69.7 bits (163), Expect = 2e-12
Identities = 36/79 (45%), Positives = 50/79 (63%)
Frame = +2
Query: 425 TYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHH 604
T++ V G D +E++EV+E +K+P F LG PKG+LL G PGTGKTLLA+A+A
Sbjct: 360 TFKDVKGCDDAKQELEEVVEY-LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGE 418
Query: 605 TECTFIRVSGSELVQKFIG 661
F +GSE + F+G
Sbjct: 419 AGVPFFYRAGSEFEEMFVG 437
>At3g02450.1 68416.m00232 cell division protein ftsH, putative
similar to SWISS-PROT:P46469 cell division protein ftsH
homolog [Lactococcus lactis]; contains Pfam domain,
PF00004: ATPase, AAA family ('A'TPases 'A'ssociated with
diverse cellular 'A'ctivities)
Length = 622
Score = 69.3 bits (162), Expect = 3e-12
Identities = 38/85 (44%), Positives = 50/85 (58%)
Frame = +2
Query: 410 KVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLAR 589
K P ++ V G+D E+ E++ ++ + LG P+GVLL GPPGTGKTLLAR
Sbjct: 327 KNPTVGFDDVEGVDSAKDELVEIVSC-LQGSINYKKLGARLPRGVLLVGPPGTGKTLLAR 385
Query: 590 AVAHHTECTFIRVSGSELVQKFIGR 664
AVA F VS SE V+ F+GR
Sbjct: 386 AVAGEAGVPFFSVSASEFVELFVGR 410
>At3g27120.1 68416.m03393 spastin ATPase, putative similar to
SWISS-PROT:Q9QYY8 spastin (Fragment) [Mus musculus];
contains Pfam domain, PF00004: ATPase, AAA family
Length = 287
Score = 68.9 bits (161), Expect = 3e-12
Identities = 32/91 (35%), Positives = 57/91 (62%), Gaps = 1/91 (1%)
Frame = +2
Query: 404 VEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQP-KGVLLYGPPGTGKTL 580
+++ P+ ++ + GL+ K + E++ P+ P++F G P KG+LL+GPPGTGKT+
Sbjct: 1 MDRDPNVRWDDIAGLEHAKKCVTEMVIWPLLRPDIFK--GCRSPGKGLLLFGPPGTGKTM 58
Query: 581 LARAVAHHTECTFIRVSGSELVQKFIGRRQQ 673
+ +A+A + TF +S S L K+IG ++
Sbjct: 59 IGKAIAGEAKATFFYISASSLTSKWIGEGEK 89
>At3g16290.1 68416.m02056 FtsH protease, putative contains
similarity to cell division protein FtsH GI:1652085 from
[Synechocystis sp. PCC 6803]
Length = 876
Score = 66.1 bits (154), Expect = 2e-11
Identities = 33/86 (38%), Positives = 51/86 (59%)
Frame = +2
Query: 404 VEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLL 583
+E+ D + V GL K E++E+++ H E++ G+ P G+LL GPPG GKTLL
Sbjct: 401 LERGVDVKFTDVAGLGKIRLELEEIVKF-FTHGEMYRRRGVKIPGGILLCGPPGVGKTLL 459
Query: 584 ARAVAHHTECTFIRVSGSELVQKFIG 661
A+AVA F +S S+ V+ ++G
Sbjct: 460 AKAVAGEAGVNFFSISASQFVEIYVG 485
Score = 29.9 bits (64), Expect = 1.9
Identities = 12/34 (35%), Positives = 23/34 (67%)
Frame = +1
Query: 649 KIYWEKAAEWCESSFVMAREHAPSIIFMDEINSI 750
+IY A + + ARE+APS++F+DE++++
Sbjct: 481 EIYVGVGASRVRALYQEARENAPSVVFIDELDAV 514
>At3g15120.1 68416.m01913 AAA-type ATPase family protein contains
PROSITE domains, PS00674: AAA-protein family signature
and PS00017: ATP/GTP-binding site motif A (P-loop)
Length = 1954
Score = 64.5 bits (150), Expect = 7e-11
Identities = 27/56 (48%), Positives = 42/56 (75%)
Frame = +2
Query: 428 YEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAV 595
++ V GL+ + +KEV+ +P+ +PE FD LG+ P+G+LL+G PGTGKTL+ RA+
Sbjct: 718 WDSVAGLEGVTQCMKEVVLIPLLYPEFFDNLGLTPPRGILLHGHPGTGKTLVVRAL 773
>At1g62130.1 68414.m07010 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 1025
Score = 59.7 bits (138), Expect = 2e-09
Identities = 30/72 (41%), Positives = 45/72 (62%), Gaps = 1/72 (1%)
Frame = +2
Query: 425 TYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQP-KGVLLYGPPGTGKTLLARAVAH 601
T++ +G L+ +KE++ LP + PELF + +P G+LL+GP GTGKT+LA+AVA
Sbjct: 733 TFDDIGALENVKDTLKELVMLPFQWPELFCKGQLTKPCNGILLFGPSGTGKTMLAKAVAT 792
Query: 602 HTECTFIRVSGS 637
I +S S
Sbjct: 793 EAGANLINMSMS 804
Score = 28.3 bits (60), Expect = 5.8
Identities = 11/39 (28%), Positives = 25/39 (64%)
Frame = +1
Query: 634 IRIGTKIYWEKAAEWCESSFVMAREHAPSIIFMDEINSI 750
I + ++ + ++ ++ F +A + +PSIIF+DE+ S+
Sbjct: 799 INMSMSRWFSEGEKYVKAVFSLASKISPSIIFLDEVESM 837
>At4g04910.1 68417.m00714 AAA-type ATPase family protein similar to
SP|P18708 Vesicular-fusion protein NSF
(N-ethylmaleimide-sensitive fusion protein)
(NEM-sensitive fusion protein) {Cricetulus griseus};
contains Pfam profiles PF00004: ATPase AAA family,
PF02359: Cell division protein 48 (CDC48) N-terminal
domain; contains non-consensus AT-AC splice sites at
intron 2
Length = 742
Score = 58.0 bits (134), Expect = 6e-09
Identities = 31/82 (37%), Positives = 47/82 (57%), Gaps = 2/82 (2%)
Frame = +2
Query: 437 VGGLDKQIKEI-KEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTEC 613
+GGL + +I + V P + LGI KG+LL+GPPGTGKTL+AR +
Sbjct: 217 IGGLGAEFADIFRRAFASRVFPPHVTSRLGIKHVKGMLLFGPPGTGKTLMARQIGKMLNG 276
Query: 614 TFIR-VSGSELVQKFIGRRQQN 676
+ V+G E++ KF+G ++N
Sbjct: 277 KDPKIVNGPEVLSKFVGETEKN 298
Score = 28.7 bits (61), Expect = 4.4
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +2
Query: 545 LLYGPPGTGKTLLARAVAHHTECTFIRVSGSE 640
LL GP G+GKT LA + ++ ++++ +E
Sbjct: 534 LLEGPSGSGKTALAATIGIDSDFPYVKIVSAE 565
>At4g04180.1 68417.m00593 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 609
Score = 51.2 bits (117), Expect = 7e-07
Identities = 27/97 (27%), Positives = 53/97 (54%), Gaps = 8/97 (8%)
Frame = +2
Query: 407 EKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDAL--GIA------QPKGVLLYGPP 562
+ + + +++ + G D+Q +EI++ I + + PE++D + G +P+ VL GPP
Sbjct: 311 DSMDEISWDNIAGYDQQKREIEDTILMALHSPEVYDDIVRGTRSKFESNRPRAVLFEGPP 370
Query: 563 GTGKTLLARAVAHHTECTFIRVSGSELVQKFIGRRQQ 673
GTGKT AR +A+ + V ++ K+ G ++
Sbjct: 371 GTGKTSCARVIANQAGIPLLYVPLEAVMSKYYGESER 407
>At3g04340.1 68416.m00459 FtsH protease family protein similar to
chloroplast FtsH protease [Arabidopsis thaliana]
GI:1483215; contains Pfam profiles PF01434: Peptidase
family M41, PF00004: ATPase AAA family
Length = 960
Score = 49.6 bits (113), Expect = 2e-06
Identities = 26/78 (33%), Positives = 40/78 (51%)
Frame = +2
Query: 410 KVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLAR 589
K P + ++ +EI EV+ +++P+ F +G P+GVL+ G GTGKT LA
Sbjct: 417 KNPPIPLKNFASIESMREEINEVVAF-LQNPKAFQEMGARAPRGVLIVGERGTGKTSLAL 475
Query: 590 AVAHHTECTFIRVSGSEL 643
A+A + V EL
Sbjct: 476 AIAAEARVPVVNVEAQEL 493
>At5g17760.2 68418.m02083 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 341
Score = 47.6 bits (108), Expect = 9e-06
Identities = 22/61 (36%), Positives = 38/61 (62%)
Frame = +2
Query: 422 STYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAH 601
ST+E + D +++ E ++ ++ E + +G A +G LLYGPPGTGK+ L A+A+
Sbjct: 216 STFETMAMEDDLKRDVIEDLDRFIRRKEFYKRVGKAWKRGYLLYGPPGTGKSSLVAAMAN 275
Query: 602 H 604
+
Sbjct: 276 Y 276
>At5g17760.1 68418.m02082 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 505
Score = 47.6 bits (108), Expect = 9e-06
Identities = 22/61 (36%), Positives = 38/61 (62%)
Frame = +2
Query: 422 STYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAH 601
ST+E + D +++ E ++ ++ E + +G A +G LLYGPPGTGK+ L A+A+
Sbjct: 216 STFETMAMEDDLKRDVIEDLDRFIRRKEFYKRVGKAWKRGYLLYGPPGTGKSSLVAAMAN 275
Query: 602 H 604
+
Sbjct: 276 Y 276
>At3g50930.1 68416.m05576 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 576
Score = 47.2 bits (107), Expect = 1e-05
Identities = 24/62 (38%), Positives = 39/62 (62%), Gaps = 1/62 (1%)
Frame = +2
Query: 422 STYEMVGGLDKQIK-EIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVA 598
ST++ + +D +K + E ++ VK + + +G A +G LLYGPPGTGK+ L A+A
Sbjct: 262 STFKTLA-MDSDVKTSVMEDLDKFVKRRDFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMA 320
Query: 599 HH 604
+H
Sbjct: 321 NH 322
>At1g79560.1 68414.m09275 FtsH protease, putative contains
similarity to chloroplast FtsH protease GI:5804782 from
[Nicotiana tabacum]
Length = 1008
Score = 46.0 bits (104), Expect = 3e-05
Identities = 23/65 (35%), Positives = 38/65 (58%)
Frame = +2
Query: 446 LDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIR 625
L + ++ + + + + +P + +A +GVLL GPPGTGKTL AR +A + F+
Sbjct: 497 LGGDVWDLLDELMIYMGNPMQYYEKDVAFVRGVLLSGPPGTGKTLFARTLAKESGLPFVF 556
Query: 626 VSGSE 640
SG+E
Sbjct: 557 ASGAE 561
>At3g50940.1 68416.m05577 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 451
Score = 45.6 bits (103), Expect = 4e-05
Identities = 24/62 (38%), Positives = 39/62 (62%), Gaps = 1/62 (1%)
Frame = +2
Query: 422 STYEMVGGLDKQIKE-IKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVA 598
ST+ + LD ++K+ + E ++ V+ + +G A +G LLYGPPGTGK+ L A+A
Sbjct: 210 STFRTLA-LDPEVKKNLVEDLDRFVQRKGFYGRVGKAWKRGYLLYGPPGTGKSSLIAAIA 268
Query: 599 HH 604
+H
Sbjct: 269 NH 270
>At2g18193.1 68415.m02117 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 495
Score = 45.2 bits (102), Expect = 5e-05
Identities = 23/61 (37%), Positives = 37/61 (60%)
Frame = +2
Query: 422 STYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAH 601
ST++ + K+I + +E +K E + +G A +G LLYGPPGTGK+ L A+A+
Sbjct: 206 STFDTLAMDPNAKKKIIDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMAN 265
Query: 602 H 604
+
Sbjct: 266 Y 266
>At2g18190.1 68415.m02116 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 494
Score = 44.8 bits (101), Expect = 6e-05
Identities = 24/61 (39%), Positives = 37/61 (60%)
Frame = +2
Query: 422 STYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAH 601
ST+E + K+I + +E +K E + +G A +G LLYGPPGTGK+ L A+A+
Sbjct: 207 STFETLAMDPGAKKKIIDDMERFLKRREFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMAN 266
Query: 602 H 604
+
Sbjct: 267 Y 267
>At1g43910.1 68414.m05066 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 475
Score = 44.0 bits (99), Expect = 1e-04
Identities = 18/37 (48%), Positives = 26/37 (70%)
Frame = +2
Query: 494 KHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHH 604
K + F ++G A +G LLYGPPGTGK+ + A+A+H
Sbjct: 226 KGKDFFKSVGRAWKRGYLLYGPPGTGKSSMVAAIANH 262
>At5g17740.1 68418.m02080 AAA-type ATPase family protein h-bcs1,
Homo sapiens, EMBL:AF026849 h-bcs1, Homo sapiens,
EMBL:AF026849 h-bcs1, Homo sapiens, EMBL:AF026849
contains Pfam profile: ATPase family PF00004
gene_id:K17E7.100 contains Pfam profile: ATPase family
PF00004
Length = 533
Score = 42.3 bits (95), Expect = 3e-04
Identities = 21/61 (34%), Positives = 36/61 (59%)
Frame = +2
Query: 422 STYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAH 601
ST++ + D + + E ++ V + + +G A +G LLYGPPGTGK+ L A+A+
Sbjct: 208 STFDTMAMNDDLKRSMIEDLDRFVGRKDFYKRVGKAWKRGYLLYGPPGTGKSSLVAAMAN 267
Query: 602 H 604
+
Sbjct: 268 Y 268
>At5g17730.1 68418.m02079 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 470
Score = 41.9 bits (94), Expect = 4e-04
Identities = 18/61 (29%), Positives = 36/61 (59%)
Frame = +2
Query: 422 STYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAH 601
ST++ + ++ + + ++ ++ + + +G +G LLYGPPGTGKT L A+A+
Sbjct: 208 STFDTMAMNEELKRSVMGDLDRFIRRKDFYKRVGKPWKRGYLLYGPPGTGKTSLVAAIAN 267
Query: 602 H 604
+
Sbjct: 268 Y 268
>At3g28580.1 68416.m03568 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 500
Score = 41.1 bits (92), Expect = 8e-04
Identities = 20/63 (31%), Positives = 37/63 (58%)
Frame = +2
Query: 422 STYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAH 601
+T++ + + + +EIK + K + + +G A +G LL+GPPGTGK+ + A+A+
Sbjct: 203 ATFDTLAMEENKKEEIKSDLIKFSKSKDYYKKIGKAWKRGYLLFGPPGTGKSTMIAAMAN 262
Query: 602 HTE 610
E
Sbjct: 263 FLE 265
>At3g28570.1 68416.m03567 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 451
Score = 41.1 bits (92), Expect = 8e-04
Identities = 17/33 (51%), Positives = 24/33 (72%)
Frame = +2
Query: 503 ELFDALGIAQPKGVLLYGPPGTGKTLLARAVAH 601
E +D +G A +G LLYGPPGTGK+ + A+A+
Sbjct: 226 EYYDRIGKAWKRGYLLYGPPGTGKSTMIAAMAN 258
>At5g17750.1 68418.m02081 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 392
Score = 40.7 bits (91), Expect = 0.001
Identities = 19/61 (31%), Positives = 33/61 (54%)
Frame = +2
Query: 422 STYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAH 601
ST+ + K + E ++ +K + + +G A + LYGPPGTGK+ L A+A+
Sbjct: 183 STFHTMAMTPKLKSSVMEDLDRFIKRKDYYKRVGKAWKRSYFLYGPPGTGKSSLVAAMAN 242
Query: 602 H 604
+
Sbjct: 243 Y 243
>At4g05380.1 68417.m00820 AAA-type ATPase family protein contains
similarity to mitochondrial ATPase (AAA family) Bcs1p,
Saccharomyces cerevisiae, Swiss Prot:P32839
Length = 248
Score = 40.3 bits (90), Expect = 0.001
Identities = 17/33 (51%), Positives = 23/33 (69%)
Frame = +2
Query: 503 ELFDALGIAQPKGVLLYGPPGTGKTLLARAVAH 601
+ F +G A +G LLYGPPGTGK+ L A+A+
Sbjct: 21 DFFKTVGRAWKRGYLLYGPPGTGKSSLVAAIAN 53
>At3g28600.1 68416.m03570 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 475
Score = 39.5 bits (88), Expect = 0.002
Identities = 16/34 (47%), Positives = 24/34 (70%)
Frame = +2
Query: 503 ELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHH 604
E + +G A +G LL+GPPGTGK+ + A+A+H
Sbjct: 226 EYYKKIGKAWKRGYLLHGPPGTGKSTMIAAMANH 259
>At4g30250.1 68417.m04301 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 512
Score = 39.1 bits (87), Expect = 0.003
Identities = 21/61 (34%), Positives = 33/61 (54%)
Frame = +2
Query: 422 STYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAH 601
ST++ + ++ K I E + + G A +G LLYGPPGTGK+ L A+A+
Sbjct: 201 STFDTLAMDPEKKKRIMEDLREFANGQGFYQKTGRAWKRGYLLYGPPGTGKSSLIAAMAN 260
Query: 602 H 604
+
Sbjct: 261 Y 261
>At3g28520.1 68416.m03562 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 478
Score = 39.1 bits (87), Expect = 0.003
Identities = 22/64 (34%), Positives = 39/64 (60%), Gaps = 1/64 (1%)
Frame = +2
Query: 422 STYEMVG-GLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVA 598
+++E +G LDK+ +EIK+ + K + + + +G LL+GPPGTGK+ + A+A
Sbjct: 191 ASFETLGMDLDKK-EEIKKDLIKFTKGKDYYRKVAKPWKRGYLLFGPPGTGKSTMISAIA 249
Query: 599 HHTE 610
+ E
Sbjct: 250 NFLE 253
>At1g21690.1 68414.m02714 replication factor C 37 kDa, putative
Similar to SWISS-PROT:P35249 activator 1 37 kDa subunit
(Replication factor C 37 kDa subunit, A1 37 kDa subunit,
RF-C 37 kDa subunit, RFC37) [Homo sapiens]; contains
Pfam domain, PF00004: ATPase, AAA family
Length = 339
Score = 38.7 bits (86), Expect = 0.004
Identities = 20/47 (42%), Positives = 26/47 (55%)
Frame = +2
Query: 461 KEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAH 601
K++K+V L + L A +L YGPPGTGKT A A+AH
Sbjct: 18 KQVKDVAHQEEVVRVLTNTLQTADCPHMLFYGPPGTGKTTTALAIAH 64
>At5g57480.1 68418.m07183 AAA-type ATPase family protein contains
Pfam profile: PF00004 ATPase family
Length = 520
Score = 38.3 bits (85), Expect = 0.005
Identities = 19/61 (31%), Positives = 36/61 (59%)
Frame = +2
Query: 422 STYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAH 601
ST+E + ++ ++I + ++ + + G A +G LLYGPPGTGK+ + A+A+
Sbjct: 200 STFETLAMDPRKKQQIMDDLKDFAEGQVFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMAN 259
Query: 602 H 604
+
Sbjct: 260 Y 260
>At5g40010.1 68418.m04852 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 514
Score = 38.3 bits (85), Expect = 0.005
Identities = 20/63 (31%), Positives = 36/63 (57%)
Frame = +2
Query: 422 STYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAH 601
+T++ + K+ +EIK + + + +G A +G LL+GPPGTGK+ + A+A+
Sbjct: 206 ATFDTLAMEYKKKEEIKNDLIKFSNSKDYYKKIGKAWKRGYLLFGPPGTGKSTMIAAMAN 265
Query: 602 HTE 610
E
Sbjct: 266 LLE 268
>At5g40000.1 68418.m04851 AAA-type ATPase family protein BCS1
nuclear gene encoding mitochondrial protein - Homo
sapiens, EMBL:AF026849 contains Pfam profile: ATPase
family PF00004
Length = 470
Score = 38.3 bits (85), Expect = 0.005
Identities = 16/33 (48%), Positives = 23/33 (69%)
Frame = +2
Query: 503 ELFDALGIAQPKGVLLYGPPGTGKTLLARAVAH 601
E + +G A +G LLYGPPGTGK+ + A+A+
Sbjct: 231 EYYKKIGKAWKRGYLLYGPPGTGKSTMISAMAN 263
>At5g16930.1 68418.m01984 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 644
Score = 38.3 bits (85), Expect = 0.005
Identities = 14/36 (38%), Positives = 24/36 (66%)
Frame = +2
Query: 536 KGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSEL 643
+ +L YGPPGTGKT+ AR +A + + ++G ++
Sbjct: 399 RNILFYGPPGTGKTMAARELARRSGLDYALMTGGDV 434
>At4g36580.1 68417.m05193 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family ('A'TPases
'A'ssociated with diverse cellular 'A'ctivities)
Length = 620
Score = 38.3 bits (85), Expect = 0.005
Identities = 13/36 (36%), Positives = 25/36 (69%)
Frame = +2
Query: 536 KGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSEL 643
+ ++ YGPPGTGKT++AR +A + + ++G ++
Sbjct: 371 RNMMFYGPPGTGKTMVAREIARKSGLDYAMMTGGDV 406
>At2g18330.1 68415.m02136 AAA-type ATPase family protein contains
Pfam profile: PF00004 ATPase family associated with
various cellular activities (AAA)
Length = 636
Score = 38.3 bits (85), Expect = 0.005
Identities = 13/36 (36%), Positives = 25/36 (69%)
Frame = +2
Query: 536 KGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSEL 643
+ ++ YGPPGTGKT++AR +A + + ++G ++
Sbjct: 386 RNMMFYGPPGTGKTMVAREIARKSGLDYAMMTGGDV 421
>At4g25835.1 68417.m03716 AAA-type ATPase family protein contains
Pfam profile: PF00004 ATPase family
Length = 506
Score = 37.9 bits (84), Expect = 0.007
Identities = 19/61 (31%), Positives = 36/61 (59%)
Frame = +2
Query: 422 STYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAH 601
ST++ + + ++I E ++ + ++ G A +G LLYGPPGTGK+ + A+A+
Sbjct: 200 STFDTLAMDPVKKQQIMEDLKDFAECQSFYERTGRAWKRGYLLYGPPGTGKSSMIAAMAN 259
Query: 602 H 604
+
Sbjct: 260 Y 260
>At3g28610.1 68416.m03571 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 473
Score = 37.5 bits (83), Expect = 0.009
Identities = 19/60 (31%), Positives = 34/60 (56%)
Frame = +2
Query: 422 STYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAH 601
+T+E + K+ ++I + + + +G A +G LLYGPPGTGK+ + A+A+
Sbjct: 199 ATFETLAMDPKKKEQILNDLAAFNNGKDYYKKIGKAWKRGYLLYGPPGTGKSTMIAAMAN 258
>At3g03060.1 68416.m00302 AAA-type ATPase family protein contains a
ATP/GTP-binding site motif A (P-loop), PROSITE:PS00017
Length = 639
Score = 37.5 bits (83), Expect = 0.009
Identities = 14/36 (38%), Positives = 25/36 (69%)
Frame = +2
Query: 536 KGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSEL 643
+ +LL+GPPGTGKT+ AR +A + + ++G ++
Sbjct: 398 RNILLHGPPGTGKTMAARELARKSGLDYALMTGGDV 433
>At3g28540.1 68416.m03564 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 510
Score = 37.1 bits (82), Expect = 0.012
Identities = 21/64 (32%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Frame = +2
Query: 422 STYEMVG-GLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVA 598
+T+E + L+K+ K++I+ K + + +G +G LL+GPPGTGK+ + A+A
Sbjct: 202 ATFETLAMDLEKKEGMKKDLIKF-TKGKDYYRKVGKPWKRGYLLFGPPGTGKSTMISAMA 260
Query: 599 HHTE 610
+ E
Sbjct: 261 NFLE 264
>At3g28510.1 68416.m03561 AAA-type ATPase family protein contains
Pfam profile: PF00004 ATPase family
Length = 530
Score = 37.1 bits (82), Expect = 0.012
Identities = 21/61 (34%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
Frame = +2
Query: 422 STYEMVGGLDKQIKE-IKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVA 598
+T+E + +D + KE IK+ + K + + +G +G LL+GPPGTGK+ + A+A
Sbjct: 206 ATFETLA-MDPEKKEGIKKDLIKFSKGKDYYKKVGKPWKRGYLLFGPPGTGKSTMIAAIA 264
Query: 599 H 601
+
Sbjct: 265 N 265
>At3g05780.1 68416.m00649 Lon protease, putative similar to Lon
protease homolog 2 SP:P93655
Length = 924
Score = 35.5 bits (78), Expect = 0.038
Identities = 16/37 (43%), Positives = 22/37 (59%)
Frame = +2
Query: 521 GIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVS 631
G +Q K + L GPPG GKT + R++A + F R S
Sbjct: 436 GTSQGKIICLSGPPGVGKTSIGRSIARALDRKFFRFS 472
>At2g46620.1 68415.m05815 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 491
Score = 35.5 bits (78), Expect = 0.038
Identities = 18/61 (29%), Positives = 33/61 (54%)
Frame = +2
Query: 464 EIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSEL 643
++K +E +K + ++ LG + LLYGP GTGK+ A+A+ + + S++
Sbjct: 208 KVKSDLESFLKGKQYYNRLGRVWKRSYLLYGPSGTGKSSFVAAMANFLDYDVYDIDLSKV 267
Query: 644 V 646
V
Sbjct: 268 V 268
>At1g21690.2 68414.m02715 replication factor C 37 kDa, putative
Similar to SWISS-PROT:P35249 activator 1 37 kDa subunit
(Replication factor C 37 kDa subunit, A1 37 kDa subunit,
RF-C 37 kDa subunit, RFC37) [Homo sapiens]; contains
Pfam domain, PF00004: ATPase, AAA family
Length = 327
Score = 35.5 bits (78), Expect = 0.038
Identities = 14/20 (70%), Positives = 16/20 (80%)
Frame = +2
Query: 542 VLLYGPPGTGKTLLARAVAH 601
+L YGPPGTGKT A A+AH
Sbjct: 33 MLFYGPPGTGKTTTALAIAH 52
>At1g08270.2 68414.m00912 expressed protein low similarity to
SP|P46467 SKD1 protein (Vacuolar sorting protein 4b)
{Mus musculus}
Length = 132
Score = 35.5 bits (78), Expect = 0.038
Identities = 15/48 (31%), Positives = 27/48 (56%)
Frame = +2
Query: 401 MVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGV 544
++ + P+ + +V GL+ + +KE + LPV P+ F A I P+ V
Sbjct: 83 IIREKPNVKWTVVAGLESAKQALKEAVILPVNFPQFFTARAIYDPRDV 130
>At5g53350.1 68418.m06630 ATP-dependent Clp protease ATP-binding
subunit ClpX1 (CLPX) identical to CLP protease
regulatory subunit CLPX GI:2674203 from [Arabidopsis
thaliana]
Length = 579
Score = 35.1 bits (77), Expect = 0.050
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +2
Query: 530 QPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQ 649
+ +LL GP G+GKTLLA+ +A F+ + L Q
Sbjct: 222 EKSNILLMGPTGSGKTLLAKTLARFVNVPFVIADATTLTQ 261
>At5g26860.1 68418.m03204 Lon protease homolog 2, mitochondrial
almost identical to Lon protease homolog 2
mitochondrial precursor SP:P93655, GI:1848290 from
[Arabidopsis thaliana]
Length = 940
Score = 34.7 bits (76), Expect = 0.066
Identities = 16/37 (43%), Positives = 21/37 (56%)
Frame = +2
Query: 521 GIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVS 631
G +Q K + L GPPG GKT + R++A F R S
Sbjct: 453 GTSQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFS 489
>At3g30842.1 68416.m03968 ABC transporter protein, putative similar
to pleiotropic drug resistance like protein [Nicotiana
tabacum] GI:20522008, ABC1 protein [Nicotiana
plumbaginifolia] GI:14331118; contains Pfam profile
PF00005: ABC transporter
Length = 1406
Score = 34.3 bits (75), Expect = 0.088
Identities = 20/44 (45%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Frame = +2
Query: 506 LFDALGIAQP-KGVLLYGPPGTGKTLLARAVAHHTECTFIRVSG 634
L D GI +P + LL GPPG+GK+ L +A++ TE T +R +G
Sbjct: 162 LNDVSGIIKPGRLTLLLGPPGSGKSTLLKALSGKTE-TGLRSTG 204
>At1g67120.1 68414.m07636 midasin-related similar to Midasin
(MIDAS-containing protein) (Swiss-Prot:Q12019)
[Saccharomyces cerevisiae]; similar to Midasin
(MIDAS-containing protein) (Swiss-Prot:Q9NU22) [Homo
sapiens]; contains Prosite PS00017: ATP/GTP-binding site
motif A (P-loop)
Length = 5336
Score = 34.3 bits (75), Expect = 0.088
Identities = 17/49 (34%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Frame = +2
Query: 458 IKEIKEVIELPVKHPELFD--ALGIAQPKGVLLYGPPGTGKTLLARAVA 598
+ E E+ + + F+ +L ++Q + VLLYGP G+GK+ L R +A
Sbjct: 326 VNSFSEPFEIHSRVKKSFEMVSLAVSQKRPVLLYGPSGSGKSALIRKLA 374
Score = 30.7 bits (66), Expect = 1.1
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = +2
Query: 488 PVKHPELFDALGIAQ-PKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSE 640
P H + L Q K +LL G PG GKT L A+ ++ +R++ SE
Sbjct: 1729 PTTHRNVLRVLRAMQLSKPILLEGSPGVGKTSLILALGKYSGHKVVRINLSE 1780
Score = 29.9 bits (64), Expect = 1.9
Identities = 15/42 (35%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
Frame = +2
Query: 542 VLLYGPPGTGKTLLARAVAHHTECTFIRVSGSEL--VQKFIG 661
VLL GP +GKT L + +A + F+R++ E +Q+++G
Sbjct: 1075 VLLQGPTSSGKTSLVKYLAAISGNKFVRINNHEQTDIQEYLG 1116
>At1g33360.1 68414.m04129 ATP-dependent Clp protease ATP-binding
subunit ClpX, putative similar to CLP protease
regulatory subunit CLPX GI:2674203 from [Arabidopsis
thaliana]
Length = 656
Score = 34.3 bits (75), Expect = 0.088
Identities = 16/36 (44%), Positives = 21/36 (58%)
Frame = +2
Query: 542 VLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQ 649
VLL GP G+GKTLLA+ +A F+ + L Q
Sbjct: 311 VLLMGPTGSGKTLLAKTLARLVNVPFVIADATTLTQ 346
>At4g14670.1 68417.m02255 heat shock protein 101, putative / HSP101,
putative similar to heat shock protein 101 GI:6715468
GB:AAF26423 from [Arabidopsis thaliana]
Length = 623
Score = 33.9 bits (74), Expect = 0.12
Identities = 29/86 (33%), Positives = 41/86 (47%), Gaps = 7/86 (8%)
Frame = +2
Query: 419 DSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIA---QPKGVLLY-GPPGTGKTLLA 586
D +E V G D+ +K + I L +G+ QP G L+ GP G GKT LA
Sbjct: 530 DKLHERVVGQDEAVKAVAAAI--------LRSRVGLGRPQQPSGSFLFLGPTGVGKTELA 581
Query: 587 RAVAHH---TECTFIRVSGSELVQKF 655
+A+A +E +R+ SE KF
Sbjct: 582 KALAEQLFDSENLLVRLDMSEYNDKF 607
>At5g22330.1 68418.m02605 TATA box-binding protein-interacting
protein-related similar to TATA box-binding
protein-interacting protein SP:O35753 from [ Mus
musculus]
Length = 458
Score = 33.5 bits (73), Expect = 0.15
Identities = 17/38 (44%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
Frame = +2
Query: 536 KGVLLYGPPGTGKTLLARAVAHH--TECTFIRVSGSEL 643
K +LL GPPGTGKT LA ++ ++ F + GSE+
Sbjct: 67 KALLLAGPPGTGKTALALGISQELGSKVPFCPMVGSEV 104
>At4g24710.1 68417.m03536 AAA-type ATPase family protein similar to
HPV16 E1 protein binding protein [Homo sapiens]
gi|2232019|gb|AAB64095; contains Pfam domain, PF00004:
ATPase, AAA family ('A'TPases 'A'ssociated with diverse
cellular 'A'ctivities)
Length = 467
Score = 33.5 bits (73), Expect = 0.15
Identities = 13/19 (68%), Positives = 17/19 (89%)
Frame = +2
Query: 542 VLLYGPPGTGKTLLARAVA 598
+LL+GPPGTGKT L +A+A
Sbjct: 205 ILLHGPPGTGKTSLCKALA 223
>At5g49840.1 68418.m06172 ATP-dependent Clp protease ATP-binding
subunit ClpX, putative similar to CLP protease
regulatory subunit CLPX GI:2674203 from [Arabidopsis
thaliana]; non-consensus splice donor GC at exon 4;
non-consensus splice donor AA at exon 7
Length = 606
Score = 33.1 bits (72), Expect = 0.20
Identities = 16/36 (44%), Positives = 20/36 (55%)
Frame = +2
Query: 542 VLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQ 649
VLL GP G+GKTLLA+ +A F + L Q
Sbjct: 265 VLLLGPTGSGKTLLAKTLARIVNVPFAIADATSLTQ 300
>At3g51570.1 68416.m05648 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1226
Score = 33.1 bits (72), Expect = 0.20
Identities = 20/61 (32%), Positives = 32/61 (52%)
Frame = +2
Query: 443 GLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFI 622
GL ++++E+KE ++L + + LG+ G PG GKT LAR + C F+
Sbjct: 211 GLKQRLEELKEKLDLDCEETRI---LGVV--------GMPGIGKTTLAREIYETLRCKFL 259
Query: 623 R 625
R
Sbjct: 260 R 260
>At3g05790.1 68416.m00650 Lon protease, putative similar to Lon
protease homolog 2 SP:P93655
Length = 942
Score = 32.7 bits (71), Expect = 0.27
Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Frame = +2
Query: 521 GIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIR--VSGSELVQKFIGRRQ 670
G +Q K + L GP G GKT + R++A + F R V G V + G R+
Sbjct: 445 GTSQGKIICLSGPTGVGKTSIGRSIARALDRKFFRFSVGGLSDVAEIKGHRR 496
>At2g36380.1 68415.m04464 ABC transporter family protein related to
multi drug resistance proteins and P-glycoproteins
Length = 1453
Score = 32.7 bits (71), Expect = 0.27
Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Frame = +2
Query: 422 STYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGV-LLYGPPGTGKTLLARAVA 598
+T E + GL + K IE+ L D GI +P + LL GPP +GKT L +A+A
Sbjct: 167 NTIESILGLFHLLPSKKRKIEI------LKDISGIIKPSRMTLLLGPPSSGKTTLLQALA 220
Query: 599 HHTECTFIRVSG 634
+ T +++SG
Sbjct: 221 GKLDDT-LQMSG 231
>At2g37280.1 68415.m04573 ABC transporter family protein similar to
PDR5-like ABC transporter GI:1514643 from [Spirodela
polyrhiza]
Length = 1413
Score = 32.3 bits (70), Expect = 0.35
Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +2
Query: 506 LFDALGIAQP-KGVLLYGPPGTGKTLLARAVAHHTE 610
L D GI P + LL GPPG GKT L +A++ + E
Sbjct: 155 LTDVSGIISPGRLTLLLGPPGCGKTTLLKALSGNLE 190
>At5g67630.1 68418.m08527 DNA helicase, putative similar to
RuvB-like DNA helicase reptin [Danio rerio] GI:27733814,
reptin [Drosophila melanogaster] GI:7243682
Length = 469
Score = 31.9 bits (69), Expect = 0.47
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Frame = +2
Query: 536 KGVLLYGPPGTGKTLLARAVAHH--TECTFIRVSGSEL 643
+ +L+ G PGTGKT +A +A E F ++GSE+
Sbjct: 67 RAILIAGQPGTGKTAIAMGMAKSLGLETPFAMIAGSEI 104
>At5g47010.1 68418.m05794 RNA helicase, putative similar to type 1
RNA helicase pNORF1 [Homo sapiens] GI:1885356
Length = 1254
Score = 31.9 bits (69), Expect = 0.47
Identities = 11/20 (55%), Positives = 16/20 (80%)
Frame = +2
Query: 545 LLYGPPGTGKTLLARAVAHH 604
L+ GPPGTGKT+ + A+ +H
Sbjct: 507 LIQGPPGTGKTVTSAAIVYH 526
>At1g77470.1 68414.m09021 replication factor C 36 kDA, putative
similar to SWISS-PROT:P40937 activator 1 36 kDa subunit
(Replication factor C 36 kDa subunit, A1 36 kDa subunit,
RF-C 36 kDa subunit, RFC36) [Homo sapiens]
Length = 369
Score = 31.9 bits (69), Expect = 0.47
Identities = 14/19 (73%), Positives = 15/19 (78%)
Frame = +2
Query: 542 VLLYGPPGTGKTLLARAVA 598
+LLYGPPGTGKT AVA
Sbjct: 75 LLLYGPPGTGKTSTILAVA 93
>At1g66950.1 68414.m07612 ABC transporter family protein similar to
PDR5-like ABC transporter GI:1514643 from [Spirodela
polyrhiza]
Length = 1454
Score = 31.9 bits (69), Expect = 0.47
Identities = 19/44 (43%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Frame = +2
Query: 506 LFDALGIAQPKGV-LLYGPPGTGKTLLARAVAHHTECTFIRVSG 634
L D GI +P + LL GPP +GKT L +A+A + T +++SG
Sbjct: 191 LKDISGIVKPSRMTLLLGPPSSGKTTLLQALAGKLDDT-LQMSG 233
>At2g25140.1 68415.m03007 heat shock protein 100, putative / HSP100,
putative / heat shock protein clpB, putative /
HSP100/ClpB, putative similar to HSP100/ClpB GI:9651530
[Phaseolus lunatus]
Length = 964
Score = 31.5 bits (68), Expect = 0.62
Identities = 17/39 (43%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
Frame = +2
Query: 545 LLYGPPGTGKTLLARAVA---HHTECTFIRVSGSELVQK 652
+ GP G GKT LA+A+A +TE +RV SE ++K
Sbjct: 687 MFMGPTGVGKTELAKALAGYLFNTENAIVRVDMSEYMEK 725
>At5g15450.1 68418.m01808 heat shock protein 100, putative / HSP100,
putative / heat shock protein clpB, putative /
HSP100/ClpB, putative similar to HSP100/ClpB GI:9651530
[Phaseolus lunatus]
Length = 968
Score = 31.1 bits (67), Expect = 0.82
Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
Frame = +2
Query: 545 LLYGPPGTGKTLLARAVAHH---TECTFIRVSGSELVQK 652
+ GP G GKT LA+A+A + TE +R+ SE ++K
Sbjct: 682 MFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEK 720
>At1g15520.1 68414.m01867 ABC transporter family protein similar to
ABC1 protein GI:14331118 from [Nicotiana
plumbaginifolia]
Length = 1423
Score = 31.1 bits (67), Expect = 0.82
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = +2
Query: 449 DKQIKEIKEVIELPVKHPELFDALGIAQP-KGVLLYGPPGTGKTLLARAVA 598
DK + + V K L D GI +P + LL GPP +GKT L A+A
Sbjct: 151 DKFLNTLHLVPNRKKKFTILNDVSGIVKPGRMALLLGPPSSGKTTLLLALA 201
>At1g04730.1 68414.m00469 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family ('A'TPases
'A'ssociated with diverse cellular 'A'ctivities)
Length = 954
Score = 31.1 bits (67), Expect = 0.82
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +2
Query: 521 GIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSE 640
G + K +LL G PG GKT LA A H + ++ S+
Sbjct: 341 GPPEQKILLLCGAPGLGKTTLAHIAAKHCGYRVVEINASD 380
>At1g74310.1 68414.m08605 heat shock protein 101 (HSP101) identical
to heat shock protein 101 GI:6715468 GB:AAF26423 from
[Arabidopsis thaliana]
Length = 911
Score = 30.7 bits (66), Expect = 1.1
Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 4/45 (8%)
Frame = +2
Query: 530 QPKGVLLY-GPPGTGKTLLARAVAHH---TECTFIRVSGSELVQK 652
QP G L+ GP G GKT LA+A+A E +R+ SE +++
Sbjct: 597 QPTGSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYMEQ 641
>At3g49830.1 68416.m05448 DNA helicase-related similar to DNA
helicase GI:4521249 from [Mus musculus]
Length = 473
Score = 30.3 bits (65), Expect = 1.4
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Frame = +2
Query: 536 KGVLLYGPPGTGKTLLARAVAHH--TECTFIRVSGSEL 643
+ +L+ G PGTGK +A +A E F ++GSE+
Sbjct: 67 RAILIAGQPGTGKIAIAMGIAKSLGQETPFTMIAGSEI 104
>At2g16870.1 68415.m01941 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1109
Score = 30.3 bits (65), Expect = 1.4
Identities = 19/60 (31%), Positives = 35/60 (58%)
Frame = +2
Query: 416 PDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAV 595
P S ++ + G++ +KE++ +++ FD G+ K V ++GP G GKT +ARA+
Sbjct: 178 PSSDFDGMVGIEAHLKEMEVLLD--------FDYDGV---KIVGIFGPAGIGKTTIARAL 226
>At4g15236.1 68417.m02335 ABC transporter family protein similar to
pleiotropic drug resistance like protein [Nicotiana
tabacum] GI:20522008, ABC1 protein [Nicotiana
plumbaginifolia] GI:14331118; contains Pfam profile
PF00005: ABC transporter
Length = 1388
Score = 29.9 bits (64), Expect = 1.9
Identities = 15/27 (55%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Frame = +2
Query: 521 GIAQPKGV-LLYGPPGTGKTLLARAVA 598
GI +PK + LL GPPG GKT L A++
Sbjct: 157 GIIRPKRMTLLLGPPGCGKTTLLLALS 183
>At3g29800.1 68416.m03792 AAA-type ATPase family contains Pfam
profile: ATPase family PF00004
Length = 440
Score = 29.9 bits (64), Expect = 1.9
Identities = 16/61 (26%), Positives = 32/61 (52%)
Frame = +2
Query: 422 STYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAH 601
S++E + + + + + I+L + + + +G + LL+G PG GKT L A+A
Sbjct: 162 SSFETIVMKEDLKRRLIDDIDLFISKEDFYKRVGRHWMRYYLLHGLPGAGKTSLVAAIAK 221
Query: 602 H 604
+
Sbjct: 222 Y 222
>At2g29940.1 68415.m03642 ABC transporter family protein similar to
ABC1 protein GI:14331118 from [Nicotiana
plumbaginifolia]
Length = 1426
Score = 29.9 bits (64), Expect = 1.9
Identities = 16/32 (50%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Frame = +2
Query: 506 LFDALGIAQP-KGVLLYGPPGTGKTLLARAVA 598
L D GI +P + LL GPPG+GK+ L A+A
Sbjct: 176 LKDISGIIKPGRMTLLLGPPGSGKSTLLLALA 207
>At2g17060.1 68415.m01970 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1195
Score = 29.9 bits (64), Expect = 1.9
Identities = 21/70 (30%), Positives = 35/70 (50%)
Frame = +2
Query: 416 PDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAV 595
P++ E+VG L +++KE+KE ++L K + LG+ PG GKT L + +
Sbjct: 214 PENQIELVG-LSQRLKELKEKLDLSRKETRIVGVLGM-----------PGIGKTTLVKRL 261
Query: 596 AHHTECTFIR 625
+ F R
Sbjct: 262 YDEWKHNFQR 271
>At1g63880.1 68414.m07234 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1017
Score = 29.9 bits (64), Expect = 1.9
Identities = 24/86 (27%), Positives = 43/86 (50%)
Frame = +2
Query: 338 NESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDA 517
NE+ + KI + +D L P ++ + G++ ++EIK +++L D
Sbjct: 160 NEAIMIEKIARDVLDKL------NATPSRDFDGMVGIEAHLREIKSLLDL--------DN 205
Query: 518 LGIAQPKGVLLYGPPGTGKTLLARAV 595
+ + K V + GP G GKT +ARA+
Sbjct: 206 VEV---KIVAIAGPAGIGKTTIARAL 228
>At1g60700.1 68414.m06833 forkhead-associated domain-containing
protein / FHA domain-containing protein contains
similarity to nucleolar protein GI:2384719 from [Mus
musculus]
Length = 525
Score = 29.9 bits (64), Expect = 1.9
Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = +2
Query: 278 DLDKNVDINDVTANCRVALRNES-YTLHKILPNKVDPL 388
DLD N DI D + R LR ES + ++ N DPL
Sbjct: 64 DLDNNADIGDGDEDIRNCLRPESDFWFKNLMDNPYDPL 101
>At1g15210.1 68414.m01818 ABC transporter family protein Similar to
gb|Z70524 GI:1514643 PDR5-like ABC transporter from
Spirodela polyrrhiza and is a member of the PF|00005 ABC
transporter family. ESTs gb|N97039 and gb|T43169 come
from this gene
Length = 1442
Score = 29.9 bits (64), Expect = 1.9
Identities = 16/32 (50%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = +2
Query: 506 LFDALGIAQPKGV-LLYGPPGTGKTLLARAVA 598
L D GI +P + LL GPP +GKT L A+A
Sbjct: 185 LKDVSGIVKPSRMTLLLGPPSSGKTTLLLALA 216
>At5g47040.1 68418.m05797 Lon protease homolog 1, mitochondrial
(LON) identical to Lon protease homolog 1 mitochondrial
precursor SP:O64948 from [Arabidopsis thaliana]
Length = 888
Score = 29.5 bits (63), Expect = 2.5
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +2
Query: 554 GPPGTGKTLLARAVAHHTECTFIRVS 631
GPPG GKT LA ++A F+R+S
Sbjct: 408 GPPGVGKTSLASSIAAALGRKFVRLS 433
>At4g15570.1 68417.m02379 tRNA-splicing endonuclease positive
effector-related contains similarity to SEN1, a positive
effector of tRNA-splicing endonuclease [Saccharomyces
cerevisiae] gi|172574|gb|AAB63976
Length = 818
Score = 29.5 bits (63), Expect = 2.5
Identities = 11/20 (55%), Positives = 16/20 (80%)
Frame = +2
Query: 518 LGIAQPKGVLLYGPPGTGKT 577
+G+++ VL+ GPPGTGKT
Sbjct: 268 VGLSRKSFVLIQGPPGTGKT 287
>At4g15230.1 68417.m02333 ABC transporter family protein similar to
pleiotropic drug resistance like protein [Nicotiana
tabacum] GI:20522008, PDR5-like ABC transporter
[Spirodela polyrhiza] GI:1514643; contains Pfam profile
PF00005: ABC transporter
Length = 1326
Score = 29.5 bits (63), Expect = 2.5
Identities = 14/27 (51%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Frame = +2
Query: 521 GIAQP-KGVLLYGPPGTGKTLLARAVA 598
GI +P + LL GPPG GKT L +A++
Sbjct: 162 GIVRPGRMTLLLGPPGCGKTTLLQALS 188
>At4g15215.1 68417.m02332 ABC transporter family protein similar to
PDR5-like ABC transporter [Spirodela polyrhiza]
GI:1514643; contains Pfam profile PF00005: ABC
transporter
Length = 1390
Score = 29.5 bits (63), Expect = 2.5
Identities = 14/27 (51%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Frame = +2
Query: 521 GIAQP-KGVLLYGPPGTGKTLLARAVA 598
GI +P + LL GPPG GKT L +A++
Sbjct: 159 GIVRPGRMTLLLGPPGCGKTTLLQALS 185
>At3g24530.1 68416.m03080 AAA-type ATPase family protein / ankyrin
repeat family protein contains Pfam profiles: PF00023
ankyrin repeat, PF00004 ATPase family associated with
various cellular activities (AAA)
Length = 481
Score = 29.5 bits (63), Expect = 2.5
Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Frame = +2
Query: 404 VEKVPDSTYEMVG--GLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKT 577
+E + D +VG L Q+++ + + L + L +G +P + G PGTGKT
Sbjct: 200 MELLEDELSNIVGLSELKTQLRKWAKGMLLDERRRALGLNIGTRRPPHMAFLGNPGTGKT 259
Query: 578 LLARAV 595
++AR +
Sbjct: 260 MVARVL 265
>At3g16340.1 68416.m02066 ABC transporter family protein similar to
PDR5-like ABC transporter GI:1514643 from [Spirodela
polyrhiza]; contains Pfam profile: PF00005 ABC
transporter
Length = 1416
Score = 29.5 bits (63), Expect = 2.5
Identities = 16/32 (50%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = +2
Query: 506 LFDALGIAQPKGV-LLYGPPGTGKTLLARAVA 598
L D GI +P + LL GPP +GKT L A+A
Sbjct: 163 LRDVSGIIKPSRMTLLLGPPSSGKTTLLLALA 194
>At1g63750.1 68414.m07214 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1131
Score = 29.5 bits (63), Expect = 2.5
Identities = 19/60 (31%), Positives = 32/60 (53%)
Frame = +2
Query: 416 PDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAV 595
P +E + GL+ +K+I+ ++ L K L +GI+ GP G GK+ +ARA+
Sbjct: 184 PSKDFEDMMGLEAHLKKIQSLLRLDYKDEALI--IGIS--------GPAGIGKSTIARAL 233
>At1g63160.1 68414.m07138 replication factor C 40 kDa, putative
similar to SWISS-PROT:Q9WUK4 activator 1 40 kDa subunit
(Replication factor C 40 kDa subunit, A1 40 kDa subunit,
RF-C 40 kDa subunit, RFC40) [Mus musculus]
Length = 333
Score = 29.5 bits (63), Expect = 2.5
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +2
Query: 542 VLLYGPPGTGKTLLARAVAH 601
++L GPPGTGKT A+AH
Sbjct: 51 LILSGPPGTGKTTSILALAH 70
>At1g59870.1 68414.m06745 ABC transporter family protein similar to
PDR5-like ABC transporter GI:1514643 from [Spirodela
polyrhiza]
Length = 1469
Score = 29.5 bits (63), Expect = 2.5
Identities = 18/44 (40%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Frame = +2
Query: 506 LFDALGIAQP-KGVLLYGPPGTGKTLLARAVAHHTECTFIRVSG 634
L D G+ +P + LL GPP +GKT L A+A + + ++VSG
Sbjct: 187 LKDISGVIKPGRMTLLLGPPSSGKTTLLLALAGKLDKS-LQVSG 229
>At1g08270.1 68414.m00913 expressed protein low similarity to
SP|P46467 SKD1 protein (Vacuolar sorting protein 4b)
{Mus musculus}
Length = 126
Score = 29.5 bits (63), Expect = 2.5
Identities = 11/37 (29%), Positives = 22/37 (59%)
Frame = +2
Query: 401 MVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELF 511
++ + P+ + +V GL+ + +KE + LPV P+ F
Sbjct: 83 IIREKPNVKWTVVAGLESAKQALKEAVILPVNFPQFF 119
>At5g46470.1 68418.m05723 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1127
Score = 29.1 bits (62), Expect = 3.3
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +2
Query: 548 LYGPPGTGKTLLARAVAHHTECTF 619
++GP G GKT +ARA+ C F
Sbjct: 213 IWGPSGIGKTTIARALFSRLSCQF 236
>At5g11250.1 68418.m01314 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1189
Score = 29.1 bits (62), Expect = 3.3
Identities = 19/82 (23%), Positives = 40/82 (48%)
Frame = +2
Query: 374 KVDPLVSLMMVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLY 553
K+ +S +++ P ++ + G+ ++++K ++ L + +GI +
Sbjct: 215 KIATDISNILINSTPSRDFDGLVGMRAHLEKMKPLLCLDTDEVRI---IGI--------W 263
Query: 554 GPPGTGKTLLARAVAHHTECTF 619
GPPG GKT +AR V + +F
Sbjct: 264 GPPGIGKTTIARVVYNQLSHSF 285
>At4g30490.1 68417.m04329 AFG1-like ATPase family protein contains
Pfam profile: PF03969 AFG1-like ATPase
Length = 497
Score = 29.1 bits (62), Expect = 3.3
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +2
Query: 536 KGVLLYGPPGTGKTLLARAVAHHTECTF 619
KG+ LYG GTGKT+L CT+
Sbjct: 162 KGLYLYGGVGTGKTMLMDLFFDQLPCTW 189
>At3g53480.1 68416.m05904 ABC transporter family protein PDR5-like
ABC transporter, Spirodela polyrrhiza, EMBL:Z70524
Length = 1450
Score = 29.1 bits (62), Expect = 3.3
Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = +2
Query: 512 DALGIAQP-KGVLLYGPPGTGKTLLARAVAHHTE 610
D GI +P + LL GPP GKT L +A++ + E
Sbjct: 192 DVNGIIKPGRLTLLLGPPSCGKTTLLKALSGNLE 225
>At3g04220.1 68416.m00446 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 896
Score = 29.1 bits (62), Expect = 3.3
Identities = 20/86 (23%), Positives = 44/86 (51%)
Frame = +2
Query: 338 NESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDA 517
NES + KI+ + +S M+ P ++ + G+ ++++K ++++
Sbjct: 209 NESGMIEKIVSD-----ISEMLNHSTPSRDFDDLIGMGDHMEKMKPLLDIDSD------- 256
Query: 518 LGIAQPKGVLLYGPPGTGKTLLARAV 595
+ K + ++GPPG GKT +AR++
Sbjct: 257 ----EMKTIGIWGPPGVGKTTIARSL 278
>At1g73170.1 68414.m08466 expressed protein
Length = 666
Score = 29.1 bits (62), Expect = 3.3
Identities = 12/19 (63%), Positives = 14/19 (73%)
Frame = +2
Query: 542 VLLYGPPGTGKTLLARAVA 598
+LL GPPG GKT + R VA
Sbjct: 200 LLLIGPPGVGKTTMIREVA 218
>At1g24290.1 68414.m03065 AAA-type ATPase family protein similar to
Werner helicase interacting protein [Homo sapiens]
GI:14349166; contains Pfam profiles PF00004: ATPase
family associated with various cellular activities
(AAA), PF00627: UBA/TS-N domain; contains
ATP/GTP-binding site motif A (P-loop)
Length = 525
Score = 29.1 bits (62), Expect = 3.3
Identities = 9/23 (39%), Positives = 19/23 (82%)
Frame = +2
Query: 542 VLLYGPPGTGKTLLARAVAHHTE 610
++ +GPPGTGKT +A+++ + ++
Sbjct: 140 IVFWGPPGTGKTSIAKSLINSSK 162
>At5g41540.1 68418.m05048 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1038
Score = 28.7 bits (61), Expect = 4.4
Identities = 17/69 (24%), Positives = 33/69 (47%)
Frame = +2
Query: 413 VPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARA 592
+P +E + GLD ++++ ++ L + K + ++GP G GKT +ARA
Sbjct: 176 IPSRDFEEMVGLDAHLRKLDSLL-----------CLNSDEVKMIGIWGPAGIGKTTIARA 224
Query: 593 VAHHTECTF 619
+ + F
Sbjct: 225 LYNQLSTNF 233
>At5g17890.1 68418.m02098 LIM domain-containing protein / disease
resistance protein-related low similarity to disease
resistance protein RPP4 [Arabidopsis thaliana]
GI:20270890; contains Pfam profiles PF00412: LIM domain,
PF00931: NB-ARC domain, PF00560: Leucine Rich Repeat
Length = 1613
Score = 28.7 bits (61), Expect = 4.4
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = +2
Query: 536 KGVLLYGPPGTGKTLLARAVAHH 604
+ + ++G PG GKT LA+AV +H
Sbjct: 190 RSIGIWGMPGIGKTTLAKAVFNH 212
>At5g35970.1 68418.m04332 DNA-binding protein, putative similar to
SWISS-PROT:Q60560 DNA-binding protein SMUBP-2
(Immunoglobulin MU binding protein 2, SMUBP-2)
[Mesocricetus auratus]
Length = 961
Score = 28.3 bits (60), Expect = 5.8
Identities = 13/28 (46%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
Frame = +2
Query: 515 ALGIAQPKGVLLY-GPPGTGKTLLARAV 595
ALG+ + + V++ GPPGTGKT + + V
Sbjct: 496 ALGVNKKRPVMIVQGPPGTGKTGMLKEV 523
>At4g26090.1 68417.m03756 disease resistance protein RPS2
(CC-NBS-LRR class), putative domain signature CC-NBS-LRR
exists, suggestive of a disease resistance protein.
identical to RPS2 (gi:13661831)
Length = 909
Score = 28.3 bits (60), Expect = 5.8
Identities = 13/44 (29%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = +2
Query: 467 IKEVIELPVKHPELFDALGIAQPKGVL-LYGPPGTGKTLLARAV 595
IK V+ ++ + L + +G++ +YGP G GKT L +++
Sbjct: 152 IKSVVGNTTMMEQVLEFLSEEEERGIIGVYGPGGVGKTTLMQSI 195
>At1g14460.1 68414.m01715 DNA polymerase-related weak similarity to
DNA polymerase III holoenzyme tau subunit [Thermus
thermophilus] GI:2583049
Length = 1116
Score = 28.3 bits (60), Expect = 5.8
Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
Frame = +2
Query: 407 EKVPDSTYEMVGGLDKQIKEI--KEVIELPVKHPELFDALGIAQPKGVLLY-GPPGTGKT 577
E+ ST E + L ++ K + E+I + L +A+ + V L+ GP GTGKT
Sbjct: 411 EEEGGSTPESIQSLSQKYKPMFFDELIGQSIVVQSLMNAVKKGRVAHVYLFQGPRGTGKT 470
Query: 578 LLARAVAHHTECTFI 622
AR ++ C +
Sbjct: 471 STARILSAALNCDVV 485
>At1g06720.1 68414.m00714 expressed protein contains Pfam domain,
PF04950: Protein of unknown function (DUF663)
Length = 1147
Score = 28.3 bits (60), Expect = 5.8
Identities = 12/32 (37%), Positives = 21/32 (65%)
Frame = +2
Query: 500 PELFDALGIAQPKGVLLYGPPGTGKTLLARAV 595
P++ G A P V++ GPPG GK+L+ +++
Sbjct: 72 PKIDRNYGEAPPFVVVVQGPPGVGKSLVIKSL 103
>At5g66005.2 68418.m08311 Expressed protein
Length = 164
Score = 27.9 bits (59), Expect = 7.6
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = +2
Query: 536 KGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSEL-VQKFIGRRQQNGAR 685
K +L+ GPPG GKT L V +RVS L +Q F + ++ G R
Sbjct: 6 KCLLVTGPPGVGKTTLIMRV-----LDMMRVSNPNLKIQGFYTQMRERGQR 51
>At5g58120.1 68418.m07272 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1046
Score = 27.9 bits (59), Expect = 7.6
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +2
Query: 548 LYGPPGTGKTLLARAVAHHTECTF 619
+YGP G GKT +ARA+ +F
Sbjct: 215 IYGPAGIGKTTIARALHSRLSSSF 238
>At5g22010.1 68418.m02561 AAA-type ATPase family protein / BRCT
domain-containing protein contains Pfam profiles:
PF00533 BRCA1 C Terminus (BRCT) domain, PF00004 ATPase
family associated with various cellular activities (AAA)
Length = 956
Score = 27.9 bits (59), Expect = 7.6
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +2
Query: 536 KGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSE 640
K VLL G PG GKT A+ V+ + V+ S+
Sbjct: 394 KAVLLSGTPGIGKTTSAKLVSQMLGFQAVEVNASD 428
>At4g38870.1 68417.m05504 F-box family protein contains Pfam
profile: PF00646 F-box domain
Length = 426
Score = 27.9 bits (59), Expect = 7.6
Identities = 24/98 (24%), Positives = 46/98 (46%)
Frame = +3
Query: 81 SSLSPKNLKIFVVFKPSVMNSTLKFVCYARSFSSCKNRDRTSEKWLNQWIKRRSS*KFIL 260
S L P +L I + K + ++F+C ++ ++S + +LN+ +KR S F+
Sbjct: 50 SELLPVDL-IMEILKKLSLKPLIRFLCVSKLWASIIRDPYFMKLFLNESLKRPKSLVFVF 108
Query: 261 KVNSSSI*TRTLILTMSRPIVVSLFATKAIPYTKYYPT 374
+ S ++ L +R I S ++ A T Y+ T
Sbjct: 109 RAQSLGSIFSSVHLKSTREISSSSSSSSASSIT-YHVT 145
>At4g28070.1 68417.m04026 AFG1-like ATPase family protein contains
Pfam profile: PF03969 AFG1-like ATPase
Length = 464
Score = 27.9 bits (59), Expect = 7.6
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +2
Query: 524 IAQPKGVLLYGPPGTGKTLLARAVAH 601
++ KG+ LYG GTGKT+L H
Sbjct: 130 VSPVKGLYLYGGVGTGKTMLMDLFFH 155
>At1g79050.1 68414.m09217 DNA repair protein recA identical to DNA
repair protein recA, chloroplast [Precursor] SP:Q39199
from [Arabidopsis thaliana] ;contains Pfam profile:
PF00154 recA bacterial DNA recombination protein
Length = 439
Score = 27.9 bits (59), Expect = 7.6
Identities = 15/26 (57%), Positives = 17/26 (65%), Gaps = 2/26 (7%)
Frame = +2
Query: 515 ALGIAQPKG--VLLYGPPGTGKTLLA 586
ALG PKG V +YGP +GKT LA
Sbjct: 127 ALGGGLPKGRVVEIYGPESSGKTTLA 152
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,939,666
Number of Sequences: 28952
Number of extensions: 322437
Number of successful extensions: 1423
Number of sequences better than 10.0: 149
Number of HSP's better than 10.0 without gapping: 1262
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1404
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1663169840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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