Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0380
         (722 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyc...    27   2.1  
SPBC32H8.08c |||mannosyltransferase complex subunit |Schizosacch...    27   2.1  
SPAC27E2.07 |pvg2|mug53|galactose residue biosynthesis protein P...    26   6.3  
SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c...    25   8.3  

>SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1088

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
 Frame = -3

Query: 582 LSPHLIVNKKKVLLIQIHGSGKVILKVPIIKYQ*SI-KYI-----FLHQINLNYTSFYEI 421
           +S H     K V   Q+H   K+  K+PI K   +I +Y      +L  + LN   FYE+
Sbjct: 635 MSSHFDTIMKDVGAFQLHRDWKIYSKIPIFKCHVAIVQYFHDLQDYLPIVALNLVEFYEL 694


>SPBC32H8.08c |||mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 438

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = -3

Query: 381 VRELVIFLICMFILFHAFSCIINIFHSVKGSALNF 277
           V +L+  LIC F+LFH F   +     VK S L F
Sbjct: 26  VWKLIKLLICKFLLFHDFGTAL-FTSLVKASMLGF 59


>SPAC27E2.07 |pvg2|mug53|galactose residue biosynthesis protein
           Pvg2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 389

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = -3

Query: 402 KYWRLFLVRELVIFLICMFILFHAFSCIINIFHSVKGSALNF 277
           K W  F  ++L+  LI   I+  AF+ +  I+  ++   +NF
Sbjct: 3   KLWVNFFSQKLLRLLIPSIIVVFAFAALFAIYSPIQLGGINF 44


>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 796

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -2

Query: 385 PGPGACYIFNLHVYLVSRLLLY 320
           PG G  Y++ L  Y +S  LLY
Sbjct: 192 PGDGFLYLYVLFTYFISIFLLY 213


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,701,725
Number of Sequences: 5004
Number of extensions: 54820
Number of successful extensions: 132
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)