Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0380
         (722 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0078 + 20727684-20728036,20728871-20728895,20729218-207293...    30   2.1  
08_02_0841 - 21749599-21749978,21750409-21753367                       28   8.6  

>09_06_0078 +
           20727684-20728036,20728871-20728895,20729218-20729347,
           20729441-20729571,20729654-20729742,20730127-20730203,
           20730279-20730412
          Length = 312

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 19/63 (30%), Positives = 29/63 (46%)
 Frame = +1

Query: 7   CSIQGRLAQLIFAAPSAFSHQSRIDIQHSPGFISAPLSYAPVTSIFSGKAGSKETILSPV 186
           CS  G   Q + AA  A      +DI+ SP  I+A + Y  +T +   K   K+  L+  
Sbjct: 217 CSTLGMNNQAVKAAQEAVQRSEELDIRRSPISIAAAVIYM-ITQLSDDKKPLKDISLATG 275

Query: 187 ITE 195
           + E
Sbjct: 276 VAE 278


>08_02_0841 - 21749599-21749978,21750409-21753367
          Length = 1112

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 11/28 (39%), Positives = 20/28 (71%)
 Frame = -1

Query: 209  GVRYVSVITGESIVSLDPAFPENIDVTG 126
            GV  + ++T + +V  DP+FP+N+D+ G
Sbjct: 1004 GVILLELLTKKQVV--DPSFPDNMDIVG 1029


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,054,000
Number of Sequences: 37544
Number of extensions: 299792
Number of successful extensions: 621
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 611
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 621
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1886372480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)