Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0380
         (722 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25420| Best HMM Match : PFEMP (HMM E-Value=7.4)                     29   3.8  
SB_46308| Best HMM Match : IMS (HMM E-Value=0)                         28   6.7  
SB_55393| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.8  

>SB_25420| Best HMM Match : PFEMP (HMM E-Value=7.4)
          Length = 217

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -3

Query: 621 LTATVVNINHQIALSPHLIVNKKKVLLIQ 535
           LT T  + NH++ALSP+   N+K   L++
Sbjct: 116 LTTTTKHRNHEVALSPNYNSNRKNSFLVK 144


>SB_46308| Best HMM Match : IMS (HMM E-Value=0)
          Length = 1245

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +2

Query: 317 MIQEKA*NKINMQIKNITSSRTRKSRQYFYLFSLH 421
           + QEKA N  ++++ N  SSR R   +   LF LH
Sbjct: 59  IFQEKAENLYHLRVLNFLSSRIRTLNRRSRLFKLH 93


>SB_55393| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1597

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 2/71 (2%)
 Frame = +1

Query: 142  FSGKAGSKETILSPVITETYLTPIAFGYFHNLPLSRA--LEHPVSLQKVQSRTFDRMKDV 315
            F  K    E++L   +T T   P+    F+N PL+ A  L    S + +Q R  D    V
Sbjct: 1479 FKPKLLRDESVLKEGVTFTSQNPVDQDLFNNFPLNGASFLSEFSSDEDMQWRYTDGFTTV 1538

Query: 316  DDTGEGVKQDK 348
            D+  E    DK
Sbjct: 1539 DNLEESFYADK 1549


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,165,377
Number of Sequences: 59808
Number of extensions: 369303
Number of successful extensions: 743
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 692
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 743
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1925890720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)