Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0380
         (722 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006714-2|AAK29716.2|  689|Caenorhabditis elegans Hypothetical ...    31   1.1  
AC084156-3|AAK68489.1| 1334|Caenorhabditis elegans Hypothetical ...    29   4.4  
Z83231-4|CAB05752.1|  356|Caenorhabditis elegans Hypothetical pr...    28   5.9  
U39653-2|AAM69064.1| 1092|Caenorhabditis elegans Hypothetical pr...    28   5.9  
U39653-1|AAM69065.2| 2471|Caenorhabditis elegans Hypothetical pr...    28   5.9  
U08022-1|AAA17722.1|  515|Caenorhabditis elegans STE12 transcrip...    28   7.8  
AL110501-5|CAB54505.1|  552|Caenorhabditis elegans Hypothetical ...    28   7.8  
AC006620-3|AAF39779.2|  579|Caenorhabditis elegans Hypothetical ...    28   7.8  

>AC006714-2|AAK29716.2|  689|Caenorhabditis elegans Hypothetical
           protein Y119D3B.14 protein.
          Length = 689

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 18/33 (54%), Positives = 19/33 (57%)
 Frame = -1

Query: 263 GCSNALDNGKL*KYPKAIGVRYVSVITGESIVS 165
           GCSNAL NG L  YP    V  V V+  E IVS
Sbjct: 536 GCSNALQNGPLASYP----VHAVRVVLTECIVS 564


>AC084156-3|AAK68489.1| 1334|Caenorhabditis elegans Hypothetical
           protein Y46E12BL.2 protein.
          Length = 1334

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
 Frame = +1

Query: 115 LSYAPVTSIFSGKAGSKETILSPVITETYLTPIAFGYFHNLPLSRALEH--PVSLQ 276
           +  A V +I S +      ILS   T ++L P+     HN P+S  + H  P++++
Sbjct: 529 IGVAHVMNILSLEVDPDAAILSTDFTRSWLLPVLRVNIHNAPISLFISHFLPIAMK 584


>Z83231-4|CAB05752.1|  356|Caenorhabditis elegans Hypothetical
           protein F57G9.4 protein.
          Length = 356

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 13/39 (33%), Positives = 25/39 (64%), Gaps = 4/39 (10%)
 Frame = -2

Query: 367 YIFNLHVYLVSRLLLYHQHLSF--CQRFG--FELFVGRL 263
           YI  L++Y++ ++ ++H++L       FG  FEL +G+L
Sbjct: 40  YILTLNIYIILKIKMFHRNLYILAIPLFGIWFELIIGKL 78


>U39653-2|AAM69064.1| 1092|Caenorhabditis elegans Hypothetical
           protein T13H2.5b protein.
          Length = 1092

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = +1

Query: 109 APLSYAPVTSIFSGKAGSKETILSPVITETYLTPI 213
           +P+S APV ++     G  ETIL+  IT T  T I
Sbjct: 66  SPISRAPVETVRINDHGQNETILAGNITHTVETTI 100


>U39653-1|AAM69065.2| 2471|Caenorhabditis elegans Hypothetical protein
            T13H2.5a protein.
          Length = 2471

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = +1

Query: 109  APLSYAPVTSIFSGKAGSKETILSPVITETYLTPI 213
            +P+S APV ++     G  ETIL+  IT T  T I
Sbjct: 1445 SPISRAPVETVRINDHGQNETILAGNITHTVETTI 1479


>U08022-1|AAA17722.1|  515|Caenorhabditis elegans STE12
           transcriptional activator protein.
          Length = 515

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 14/55 (25%), Positives = 25/55 (45%)
 Frame = +1

Query: 31  QLIFAAPSAFSHQSRIDIQHSPGFISAPLSYAPVTSIFSGKAGSKETILSPVITE 195
           + + A P   S +  I+   +PG ++ PL+   V    S   G K+T +   + E
Sbjct: 61  EALLAQPIDGSSEKTINSAENPGMMAIPLARVVVVEDISNNEGQKKTTVDGSVEE 115


>AL110501-5|CAB54505.1|  552|Caenorhabditis elegans Hypothetical
           protein Y79H2A.1a protein.
          Length = 552

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 14/55 (25%), Positives = 25/55 (45%)
 Frame = +1

Query: 31  QLIFAAPSAFSHQSRIDIQHSPGFISAPLSYAPVTSIFSGKAGSKETILSPVITE 195
           + + A P   S +  I+   +PG ++ PL+   V    S   G K+T +   + E
Sbjct: 98  EALLAQPIDGSSEKTINSAENPGMMAIPLARVVVVEDISNNEGQKKTTVDGSVEE 152


>AC006620-3|AAF39779.2|  579|Caenorhabditis elegans Hypothetical
           protein C51G7.4 protein.
          Length = 579

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 14/55 (25%), Positives = 25/55 (45%)
 Frame = +1

Query: 31  QLIFAAPSAFSHQSRIDIQHSPGFISAPLSYAPVTSIFSGKAGSKETILSPVITE 195
           + + A P   S +  I+   +PG ++ PL+   V    S   G K+T +   + E
Sbjct: 125 EALLAQPIDGSSEKTINSAENPGMMAIPLARVVVVEDISNNEGQKKTTVDGSVEE 179


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,721,931
Number of Sequences: 27780
Number of extensions: 295356
Number of successful extensions: 723
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 703
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 722
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1697838058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)