Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0380
(722 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AJ968562-1|CAI91546.1| 998|Apis mellifera protein ( Apis mellif... 23 2.2
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 22 5.1
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 22 5.1
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 22 5.1
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 22 5.1
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 22 5.1
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 22 5.1
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 22 5.1
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 22 5.1
EF625897-1|ABR45904.1| 684|Apis mellifera hexamerin protein. 21 8.9
>AJ968562-1|CAI91546.1| 998|Apis mellifera protein ( Apis mellifera
ORF for hypotheticalprotein. ).
Length = 998
Score = 23.4 bits (48), Expect = 2.2
Identities = 7/27 (25%), Positives = 16/27 (59%)
Frame = -3
Query: 396 WRLFLVRELVIFLICMFILFHAFSCII 316
W + L++F + +F+L F+C++
Sbjct: 590 WLRRALASLMVFSLGLFLLLDMFNCVV 616
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 22.2 bits (45), Expect = 5.1
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = +1
Query: 232 NLPLSRALEHPVSLQKVQSRTFDRMKDVDDTGEGVKQDKHA 354
+LPLS E ++ K DRMK D++ E + K A
Sbjct: 388 SLPLSGMQEELHTILKELRFITDRMKKADESDEIISDWKFA 428
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 22.2 bits (45), Expect = 5.1
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = +1
Query: 232 NLPLSRALEHPVSLQKVQSRTFDRMKDVDDTGEGVKQDKHA 354
+LPLS E ++ K DRMK D++ E + K A
Sbjct: 388 SLPLSGMQEELHTILKELRFITDRMKKADESDEIISDWKFA 428
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 22.2 bits (45), Expect = 5.1
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = +1
Query: 232 NLPLSRALEHPVSLQKVQSRTFDRMKDVDDTGEGVKQDKHA 354
+LPLS E ++ K DRMK D++ E + K A
Sbjct: 388 SLPLSGMQEELHTILKELRFITDRMKKADESDEIISDWKFA 428
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 22.2 bits (45), Expect = 5.1
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = +1
Query: 232 NLPLSRALEHPVSLQKVQSRTFDRMKDVDDTGEGVKQDKHA 354
+LPLS E ++ K DRMK D++ E + K A
Sbjct: 388 SLPLSGMQEELHTILKELRFITDRMKKADESDEIISDWKFA 428
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 22.2 bits (45), Expect = 5.1
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = +1
Query: 232 NLPLSRALEHPVSLQKVQSRTFDRMKDVDDTGEGVKQDKHA 354
+LPLS E ++ K DRMK D++ E + K A
Sbjct: 388 SLPLSGMQEELHTILKELRFITDRMKKADESDEIISDWKFA 428
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 22.2 bits (45), Expect = 5.1
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = +1
Query: 232 NLPLSRALEHPVSLQKVQSRTFDRMKDVDDTGEGVKQDKHA 354
+LPLS E ++ K DRMK D++ E + K A
Sbjct: 388 SLPLSGMQEELHTILKELRFITDRMKKADESDEIISDWKFA 428
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 22.2 bits (45), Expect = 5.1
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = +1
Query: 232 NLPLSRALEHPVSLQKVQSRTFDRMKDVDDTGEGVKQDKHA 354
+LPLS E ++ K DRMK D++ E + K A
Sbjct: 456 SLPLSGMQEELHTILKELRFITDRMKKADESDEIISDWKFA 496
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 22.2 bits (45), Expect = 5.1
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = +1
Query: 232 NLPLSRALEHPVSLQKVQSRTFDRMKDVDDTGEGVKQDKHA 354
+LPLS E ++ K DRMK D++ E + K A
Sbjct: 456 SLPLSGMQEELHTILKELRFITDRMKKADESDEIISDWKFA 496
>EF625897-1|ABR45904.1| 684|Apis mellifera hexamerin protein.
Length = 684
Score = 21.4 bits (43), Expect = 8.9
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = +1
Query: 490 FNYWNL*NYFPTAMNLN*QYFF 555
+N N NYF + LN YFF
Sbjct: 214 YNLENKLNYFIEDIGLNTYYFF 235
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,855
Number of Sequences: 438
Number of extensions: 3506
Number of successful extensions: 11
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22413960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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