Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0380
         (722 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g08910.1 68414.m00991 zinc finger (MIZ type) family protein s...    29   3.1  
At5g08480.2 68418.m01002 VQ motif-containing protein contains PF...    29   4.1  

>At1g08910.1 68414.m00991 zinc finger (MIZ type) family protein
           similar to putative variable cytadhesin protein
           (GI:7677312) {Mycoplasma gallisepticum}; contains Pfam
           PF02891: MIZ zinc finger domain
          Length = 842

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 16/75 (21%), Positives = 33/75 (44%), Gaps = 3/75 (4%)
 Frame = +1

Query: 49  PSAFSHQSRIDIQH--SPGFISAPLSYAPVTSIFSGKAGSKETILSPVITETYLTPIAFG 222
           PS+ +H   + + +  +    S P S   + ++ +    + +  +   IT     P  +G
Sbjct: 614 PSSIAHPQTLPVNYRGNTDHRSTPYSITHLQTLLNYGGNADQRPMPSSITNLQTLPATYG 673

Query: 223 -YFHNLPLSRALEHP 264
            Y H  P+S ++ HP
Sbjct: 674 GYAHQRPMSSSITHP 688


>At5g08480.2 68418.m01002 VQ motif-containing protein contains
           PF05678: VQ motif
          Length = 173

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 15/52 (28%), Positives = 27/52 (51%)
 Frame = +1

Query: 49  PSAFSHQSRIDIQHSPGFISAPLSYAPVTSIFSGKAGSKETILSPVITETYL 204
           P++  H+ R  ++     +  PLS+ P  +  S K+G+   + SPV T + L
Sbjct: 60  PTSKLHERRQCMRPKLEIVKPPLSFKPTGTTPSSKSGNTNLLTSPVGTPSSL 111


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,554,021
Number of Sequences: 28952
Number of extensions: 262331
Number of successful extensions: 540
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 524
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 540
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1575119672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)