BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brP-0380 (722 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At1g08910.1 68414.m00991 zinc finger (MIZ type) family protein s... 29 3.1 At5g08480.2 68418.m01002 VQ motif-containing protein contains PF... 29 4.1 >At1g08910.1 68414.m00991 zinc finger (MIZ type) family protein similar to putative variable cytadhesin protein (GI:7677312) {Mycoplasma gallisepticum}; contains Pfam PF02891: MIZ zinc finger domain Length = 842 Score = 29.1 bits (62), Expect = 3.1 Identities = 16/75 (21%), Positives = 33/75 (44%), Gaps = 3/75 (4%) Frame = +1 Query: 49 PSAFSHQSRIDIQH--SPGFISAPLSYAPVTSIFSGKAGSKETILSPVITETYLTPIAFG 222 PS+ +H + + + + S P S + ++ + + + + IT P +G Sbjct: 614 PSSIAHPQTLPVNYRGNTDHRSTPYSITHLQTLLNYGGNADQRPMPSSITNLQTLPATYG 673 Query: 223 -YFHNLPLSRALEHP 264 Y H P+S ++ HP Sbjct: 674 GYAHQRPMSSSITHP 688 >At5g08480.2 68418.m01002 VQ motif-containing protein contains PF05678: VQ motif Length = 173 Score = 28.7 bits (61), Expect = 4.1 Identities = 15/52 (28%), Positives = 27/52 (51%) Frame = +1 Query: 49 PSAFSHQSRIDIQHSPGFISAPLSYAPVTSIFSGKAGSKETILSPVITETYL 204 P++ H+ R ++ + PLS+ P + S K+G+ + SPV T + L Sbjct: 60 PTSKLHERRQCMRPKLEIVKPPLSFKPTGTTPSSKSGNTNLLTSPVGTPSSL 111 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 13,554,021 Number of Sequences: 28952 Number of extensions: 262331 Number of successful extensions: 540 Number of sequences better than 10.0: 2 Number of HSP's better than 10.0 without gapping: 524 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 540 length of database: 12,070,560 effective HSP length: 79 effective length of database: 9,783,352 effective search space used: 1575119672 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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