Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0377
         (750 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q22EE6 Cluster: Hypothetical repeat containing protein;...    34   4.3  
UniRef50_UPI0000587D3A Cluster: PREDICTED: hypothetical protein;...    33   5.7  

>UniRef50_Q22EE6 Cluster: Hypothetical repeat containing protein;
           n=7; Tetrahymena thermophila SB210|Rep: Hypothetical
           repeat containing protein - Tetrahymena thermophila
           SB210
          Length = 2413

 Score = 33.9 bits (74), Expect = 4.3
 Identities = 14/40 (35%), Positives = 25/40 (62%)
 Frame = -1

Query: 669 LVMNVHFRLVLHDIFRDNHIMQVAFSNNYQKKKMLILYVS 550
           L+  VH+++ LH I+   +  Q+ FS+ Y K+K++ L  S
Sbjct: 865 LIFVVHYQVDLHSIYTYQYESQITFSSQYDKEKVIQLLYS 904


>UniRef50_UPI0000587D3A Cluster: PREDICTED: hypothetical protein;
           n=2; Strongylocentrotus purpuratus|Rep: PREDICTED:
           hypothetical protein - Strongylocentrotus purpuratus
          Length = 177

 Score = 33.5 bits (73), Expect = 5.7
 Identities = 15/37 (40%), Positives = 23/37 (62%)
 Frame = -1

Query: 729 NHSPSNILKTXSR*YYENKILVMNVHFRLVLHDIFRD 619
           NHSP ++ +   +  YE K  V  +H R VL+D+FR+
Sbjct: 125 NHSPFSLTEAEVKALYEPKAKVQLLHTRDVLYDVFRE 161


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 630,228,621
Number of Sequences: 1657284
Number of extensions: 11594037
Number of successful extensions: 21379
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 20778
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21377
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 61734884250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)