Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0377
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    28   1.6  
SPCC126.09 |||vacuolar membrane zinc transporter |Schizosaccharo...    27   2.2  
SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces pombe...    27   3.8  
SPCC306.05c |ins1||INSIG domain protein|Schizosaccharomyces pomb...    27   3.8  
SPAP8A3.03 |||ZIP zinc transporter 1|Schizosaccharomyces pombe|c...    26   6.6  

>SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 689

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = -2

Query: 275 VY*NYKYSNQC*FSRADSIHYKLINAFICSRDCFN 171
           ++ NYK++N   F +  +  Y LIN+ I S +C N
Sbjct: 25  IFANYKHTND--FFKITATTYALINSVIVSNNCCN 57


>SPCC126.09 |||vacuolar membrane zinc transporter
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 418

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +1

Query: 127 CRIFFYTFFYMTVSMLKQSLLHINAF 204
           C +F  TFF +T   L+   L INAF
Sbjct: 20  CGLFLLTFFLLTTCQLRILSLSINAF 45


>SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 560

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -3

Query: 409 PLFNAGFESYSMKETIIFKSICVAISI 329
           PL+  GFE ++M+  I F +I V  SI
Sbjct: 384 PLYGVGFELWTMQPNIRFSNIYVGHSI 410


>SPCC306.05c |ins1||INSIG domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 281

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = +2

Query: 17  KXMSSVSESKASIAVTVCICSFWHVFDNTRGKI 115
           K +  +S S + +A+     S W++FD +R  I
Sbjct: 191 KKLLFISNSHSIVALVASSASIWYIFDRSRNGI 223


>SPAP8A3.03 |||ZIP zinc transporter 1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 453

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 10/50 (20%), Positives = 28/50 (56%)
 Frame = -1

Query: 687 YYENKILVMNVHFRLVLHDIFRDNHIMQVAFSNNYQKKKMLILYVSRLLS 538
           ++ N  + ++  F ++LH+I  +   + +   N Y K ++L+L +  +++
Sbjct: 319 FFTNTSIGISTTFAVLLHEIPAEIGDLAILLRNGYTKSQVLVLQMITMVT 368


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,814,579
Number of Sequences: 5004
Number of extensions: 55003
Number of successful extensions: 109
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)