Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0377
         (750 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_14102| Best HMM Match : Exo_endo_phos (HMM E-Value=0.0024)          29   4.0  
SB_8159| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   9.3  

>SB_14102| Best HMM Match : Exo_endo_phos (HMM E-Value=0.0024)
          Length = 515

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -1

Query: 171 HRHCHVKKSVKENATLNAYIFPLVLSN 91
           +R C V K VKE      Y  P+V+SN
Sbjct: 134 YRRCRVGKKVKERLNSKVYKIPVVISN 160


>SB_8159| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 767

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -1

Query: 126 LNAYIFPLVLSNTCQKEQIQTVTAIEA 46
           +N +IFPL   N  +  QI T TA++A
Sbjct: 633 MNLHIFPLFRFNKSRDSQIGTTTAVDA 659


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,766,473
Number of Sequences: 59808
Number of extensions: 365736
Number of successful extensions: 539
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 524
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 539
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)