Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0377
         (750 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82094-3|CAB05024.1| 2561|Caenorhabditis elegans Hypothetical pr...    28   6.2  
Z81120-8|CAB03348.1| 2561|Caenorhabditis elegans Hypothetical pr...    28   6.2  

>Z82094-3|CAB05024.1| 2561|Caenorhabditis elegans Hypothetical
           protein T12D8.1 protein.
          Length = 2561

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 2/64 (3%)
 Frame = +1

Query: 55  CSHCLYLFFLACV**HKRKNIGIECRIFFYTFFYMTVSMLKQSLLHINAFISL*C--IES 228
           CS+C   +   CV  H +    ++   FFY F  ++ S  +     +N F    C  + S
Sbjct: 487 CSNCAQTYHTYCVTLHDKFRGILKSDFFFYKFDLISFSKSRIKKFRVNIFFQSVCHSVNS 546

Query: 229 ALEN 240
           +L N
Sbjct: 547 SLLN 550


>Z81120-8|CAB03348.1| 2561|Caenorhabditis elegans Hypothetical
           protein T12D8.1 protein.
          Length = 2561

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 2/64 (3%)
 Frame = +1

Query: 55  CSHCLYLFFLACV**HKRKNIGIECRIFFYTFFYMTVSMLKQSLLHINAFISL*C--IES 228
           CS+C   +   CV  H +    ++   FFY F  ++ S  +     +N F    C  + S
Sbjct: 487 CSNCAQTYHTYCVTLHDKFRGILKSDFFFYKFDLISFSKSRIKKFRVNIFFQSVCHSVNS 546

Query: 229 ALEN 240
           +L N
Sbjct: 547 SLLN 550


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,347,667
Number of Sequences: 27780
Number of extensions: 304351
Number of successful extensions: 594
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 583
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 594
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)