Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0377
         (750 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g46610.1 68418.m05738 hypothetical protein contains Pfam prof...    29   3.3  
At1g59510.1 68414.m06682 expressed protein                             28   7.6  

>At5g46610.1 68418.m05738 hypothetical protein contains Pfam profile
           PF01027: Uncharacterized protein family UPF0005
          Length = 543

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
 Frame = -1

Query: 168 RHCHV---KKSVKENATLNAYIFPLVLSNTCQKEQIQTVTAIEALLSD 34
           RHCH    K  VK  + L  + + +V  + C K +IQT   +  L  D
Sbjct: 286 RHCHRFPWKHYVKVGSVLRQFGYTVVALHGCLKTEIQTPRPLRGLFKD 333


>At1g59510.1 68414.m06682 expressed protein
          Length = 381

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 12/33 (36%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = +2

Query: 41  SKASIAVTVCICSFWHVFDN-TRGKI*ALSVAF 136
           +K+S+ +TVC+  ++H+F+   RG    LS  F
Sbjct: 349 AKSSVIITVCLAVYFHIFNRFVRGPPVCLSQQF 381


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,768,160
Number of Sequences: 28952
Number of extensions: 254941
Number of successful extensions: 397
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 393
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 397
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1663169840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)