BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brP-0376 (450 letters) Database: uniref50 1,657,284 sequences; 575,637,011 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value UniRef50_Q3UA25 Cluster: Bone marrow macrophage cDNA, RIKEN full... 254 9e-67 UniRef50_P62241 Cluster: 40S ribosomal protein S8; n=93; Eukaryo... 254 9e-67 UniRef50_Q8MLY8 Cluster: 40S ribosomal protein S8; n=82; Eukaryo... 219 2e-56 UniRef50_Q5JR95 Cluster: Ribosomal protein S8; n=8; Euteleostomi... 193 1e-48 UniRef50_Q08069 Cluster: 40S ribosomal protein S8; n=21; Eukaryo... 189 2e-47 UniRef50_Q4N3P0 Cluster: 40S ribosomal protein S8; n=4; Eukaryot... 186 1e-46 UniRef50_P25204 Cluster: 40S ribosomal protein S8; n=19; Eukaryo... 163 1e-39 UniRef50_Q6QP50 Cluster: Putative 40S ribosomal protein S8; n=1;... 147 1e-34 UniRef50_UPI000049933B Cluster: conserved hypothetical protein; ... 146 2e-34 UniRef50_A6RAQ0 Cluster: Ribosomal protein S8; n=1; Ajellomyces ... 116 3e-25 UniRef50_Q7R1W8 Cluster: Ribosomal protein S8; n=1; Giardia lamb... 115 5e-25 UniRef50_Q8SWC9 Cluster: Ribosomal protein S8; n=1; Encephalitoz... 104 8e-22 UniRef50_Q9AW20 Cluster: 40S ribosomal protein S8; n=1; Guillard... 101 1e-20 UniRef50_Q3LVX9 Cluster: Ribosomal protein S8; n=1; Bigelowiella... 77 2e-13 UniRef50_Q6L0D3 Cluster: 30S ribosomal protein S8e; n=7; Archaea... 68 1e-10 UniRef50_A3CSQ2 Cluster: 30S ribosomal protein S8e; n=5; Archaea... 66 3e-10 UniRef50_Q9HJD0 Cluster: 30S ribosomal protein S8e; n=5; Euryarc... 62 4e-09 UniRef50_O58830 Cluster: 30S ribosomal protein S8e; n=6; Archaea... 57 2e-07 UniRef50_Q0W1L5 Cluster: 30S ribosomal protein S8e; n=3; Euryarc... 56 3e-07 UniRef50_Q980W3 Cluster: 30S ribosomal protein S8e; n=4; Archaea... 56 4e-07 UniRef50_Q8TV55 Cluster: 30S ribosomal protein S8e; n=1; Methano... 54 2e-06 UniRef50_Q9YDY0 Cluster: 30S ribosomal protein S8e; n=3; Desulfu... 51 1e-05 UniRef50_A0RXG5 Cluster: Ribosomal protein S8E; n=2; Thermoprote... 50 2e-05 UniRef50_P61300 Cluster: 30S ribosomal protein S8e; n=5; Methano... 50 2e-05 UniRef50_Q2NEU6 Cluster: 30S ribosomal protein S8e; n=1; Methano... 48 7e-05 UniRef50_Q8ZTB8 Cluster: 30S ribosomal protein S8e; n=6; Archaea... 46 4e-04 UniRef50_A1RX37 Cluster: Ribosomal protein S8e; n=1; Thermofilum... 39 0.058 UniRef50_Q2W531 Cluster: TPR repeat; n=3; Magnetospirillum|Rep: ... 37 0.23 UniRef50_Q9VL72 Cluster: CG5899-PA, isoform A; n=5; Diptera|Rep:... 36 0.54 UniRef50_UPI0000DB7956 Cluster: PREDICTED: similar to Deformed C... 35 0.94 UniRef50_UPI0000F32D0C Cluster: Zinc finger CCCH domain-containi... 34 1.2 UniRef50_Q5C1R4 Cluster: SJCHGC03085 protein; n=1; Schistosoma j... 33 2.9 UniRef50_A7D873 Cluster: Exodeoxyribonuclease III Xth; n=2; Meth... 33 3.8 UniRef50_A7Q5T2 Cluster: Chromosome chr14 scaffold_54, whole gen... 33 3.8 UniRef50_A7F1W3 Cluster: Putative uncharacterized protein; n=1; ... 32 5.0 UniRef50_Q10SH0 Cluster: Fizzy-related protein, putative, expres... 32 6.6 UniRef50_Q3SAD8 Cluster: Putative uncharacterized protein; n=1; ... 32 6.6 UniRef50_Q06068 Cluster: 97 kDa heat shock protein; n=3; Strongy... 32 6.6 UniRef50_Q89D60 Cluster: Blr7583 protein; n=1; Bradyrhizobium ja... 31 8.8 UniRef50_Q5YW59 Cluster: Putative phosphoglycerate mutase; n=2; ... 31 8.8 UniRef50_A4XD62 Cluster: Squalene/phytoene synthase; n=1; Salini... 31 8.8 UniRef50_A0WA04 Cluster: Putative uncharacterized protein; n=2; ... 31 8.8 >UniRef50_Q3UA25 Cluster: Bone marrow macrophage cDNA, RIKEN full-length enriched library, clone:I830031J02 product:ribosomal protein S8, full insert sequence; n=9; Deuterostomia|Rep: Bone marrow macrophage cDNA, RIKEN full-length enriched library, clone:I830031J02 product:ribosomal protein S8, full insert sequence - Mus musculus (Mouse) Length = 152 Score = 254 bits (621), Expect = 9e-67 Identities = 114/138 (82%), Positives = 124/138 (89%) Frame = +3 Query: 36 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRL 215 MGISRD+WHKRR TGGKR P KKRKYELGRPAANT++GP+RIH+VR RGGN KYRALRL Sbjct: 1 MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRL 60 Query: 216 DTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLP 395 D GNFSWGSEC TRKTRIIDVVYNASNNELVRTKTLVKN IV++D+TP+RQWYESHY LP Sbjct: 61 DVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALP 120 Query: 396 LGRKXGAKLTXAEEAIIN 449 LGRK GAKLT EE I+N Sbjct: 121 LGRKKGAKLTPEEEEILN 138 >UniRef50_P62241 Cluster: 40S ribosomal protein S8; n=93; Eukaryota|Rep: 40S ribosomal protein S8 - Homo sapiens (Human) Length = 208 Score = 254 bits (621), Expect = 9e-67 Identities = 114/138 (82%), Positives = 124/138 (89%) Frame = +3 Query: 36 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRL 215 MGISRD+WHKRR TGGKR P KKRKYELGRPAANT++GP+RIH+VR RGGN KYRALRL Sbjct: 1 MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRL 60 Query: 216 DTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLP 395 D GNFSWGSEC TRKTRIIDVVYNASNNELVRTKTLVKN IV++D+TP+RQWYESHY LP Sbjct: 61 DVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALP 120 Query: 396 LGRKXGAKLTXAEEAIIN 449 LGRK GAKLT EE I+N Sbjct: 121 LGRKKGAKLTPEEEEILN 138 >UniRef50_Q8MLY8 Cluster: 40S ribosomal protein S8; n=82; Eukaryota|Rep: 40S ribosomal protein S8 - Drosophila melanogaster (Fruit fly) Length = 208 Score = 219 bits (535), Expect = 2e-56 Identities = 102/134 (76%), Positives = 113/134 (84%) Frame = +3 Query: 36 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRL 215 MGISRD HKRRATGGKR +RKKRK+ELGRPAANT+LG R+H VR+RGGNTK RALRL Sbjct: 1 MGISRDSAHKRRATGGKRKSLRKKRKFELGRPAANTKLGSGRVHKVRTRGGNTKLRALRL 60 Query: 216 DTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLP 395 +TGNF+W SE RKTRI DVVYNASNNELVRTKTLVKN+IVV+DATPFRQWYE+HY LP Sbjct: 61 ETGNFAWASEGVARKTRIADVVYNASNNELVRTKTLVKNSIVVIDATPFRQWYEAHYVLP 120 Query: 396 LGRKXGAKLTXAEE 437 LGRK K E+ Sbjct: 121 LGRKRNPKHAQKED 134 >UniRef50_Q5JR95 Cluster: Ribosomal protein S8; n=8; Euteleostomi|Rep: Ribosomal protein S8 - Homo sapiens (Human) Length = 188 Score = 193 bits (471), Expect = 1e-48 Identities = 97/138 (70%), Positives = 107/138 (77%) Frame = +3 Query: 36 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRL 215 MGISRD+WHKRR TGGKR P KKRKYELGRPAANT++GP+RIH+VR RGG Sbjct: 1 MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGG--------- 51 Query: 216 DTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLP 395 C TRKTRIIDVVYNASNNELVRTKTLVKN IV++D+TP+RQWYESHY LP Sbjct: 52 ----------C-TRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALP 100 Query: 396 LGRKXGAKLTXAEEAIIN 449 LGRK GAKLT EE I+N Sbjct: 101 LGRKKGAKLTPEEEEILN 118 >UniRef50_Q08069 Cluster: 40S ribosomal protein S8; n=21; Eukaryota|Rep: 40S ribosomal protein S8 - Zea mays (Maize) Length = 221 Score = 189 bits (461), Expect = 2e-47 Identities = 90/125 (72%), Positives = 103/125 (82%), Gaps = 1/125 (0%) Frame = +3 Query: 36 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQR-IHSVRSRGGNTKYRALR 212 MGISRD HKRRATGGK+ RKKRKYELGR ANT+L + + VR RGGN K+RALR Sbjct: 1 MGISRDSMHKRRATGGKQKAWRKKRKYELGRQPANTKLSSNKTVRRVRVRGGNVKWRALR 60 Query: 213 LDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTL 392 LDTGN+SWGSE TRKTRI+DVVYNASNNELVRT+TLVK+AIV VDA PF+QWY +HY + Sbjct: 61 LDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLTHYGV 120 Query: 393 PLGRK 407 +GRK Sbjct: 121 DIGRK 125 >UniRef50_Q4N3P0 Cluster: 40S ribosomal protein S8; n=4; Eukaryota|Rep: 40S ribosomal protein S8 - Theileria parva Length = 188 Score = 186 bits (454), Expect = 1e-46 Identities = 85/123 (69%), Positives = 103/123 (83%) Frame = +3 Query: 36 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRL 215 MGISRD HKRR TGG+ +KKRKYELGRP++NT+LG + + VR RGGN K+RALRL Sbjct: 1 MGISRDSRHKRRLTGGRYPVHKKKRKYELGRPSSNTKLGSKLVRKVRCRGGNLKFRALRL 60 Query: 216 DTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLP 395 D+GNFSWGS+ TRKTR++DVVYNAS+NELVRTKTLVKNAIV VD TPF+ W+++HY L Sbjct: 61 DSGNFSWGSQNVTRKTRVMDVVYNASSNELVRTKTLVKNAIVTVDPTPFKLWFKTHYGLE 120 Query: 396 LGR 404 LG+ Sbjct: 121 LGK 123 >UniRef50_P25204 Cluster: 40S ribosomal protein S8; n=19; Eukaryota|Rep: 40S ribosomal protein S8 - Leishmania major Length = 220 Score = 163 bits (397), Expect = 1e-39 Identities = 80/135 (59%), Positives = 94/135 (69%), Gaps = 1/135 (0%) Frame = +3 Query: 36 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRL 215 MGI R HKR+ TGGK RK+ K ELGR ANTRLG +R+ VR+RGGN K RALRL Sbjct: 1 MGIVRSRLHKRKITGGKTKIHRKRMKAELGRLPANTRLGARRVSPVRARGGNFKIRALRL 60 Query: 216 DTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLP 395 DTGNF+W SE + R++DVVYNA++NELVRTKTLVKN IV VDA PF++WY HY + Sbjct: 61 DTGNFAWASEAIAHRVRLLDVVYNATSNELVRTKTLVKNCIVAVDAAPFKRWYAKHYGID 120 Query: 396 L-GRKXGAKLTXAEE 437 L K K A E Sbjct: 121 LDADKKSTKAAVAAE 135 >UniRef50_Q6QP50 Cluster: Putative 40S ribosomal protein S8; n=1; Zea mays|Rep: Putative 40S ribosomal protein S8 - Zea mays (Maize) Length = 245 Score = 147 bits (356), Expect = 1e-34 Identities = 69/110 (62%), Positives = 87/110 (79%), Gaps = 1/110 (0%) Frame = +3 Query: 81 GKRAPIRKKRKYELGRPAANTRLGPQR-IHSVRSRGGNTKYRALRLDTGNFSWGSECSTR 257 G P+++++ YELGR ANT+L + + VR RGGNTK+RALR DT N+SWGSE TR Sbjct: 113 GPFCPLQEEQGYELGRQPANTKLSSNKTVRRVRVRGGNTKWRALRFDTCNYSWGSEALTR 172 Query: 258 KTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRK 407 KTRI+DVVY A+NNELVRT+TLVK+AIV VDA PF+QWY +HY + +GRK Sbjct: 173 KTRILDVVYIATNNELVRTQTLVKSAIVQVDAAPFKQWYLTHYGVDIGRK 222 >UniRef50_UPI000049933B Cluster: conserved hypothetical protein; n=3; Entamoeba histolytica HM-1:IMSS|Rep: conserved hypothetical protein - Entamoeba histolytica HM-1:IMSS Length = 237 Score = 146 bits (354), Expect = 2e-34 Identities = 68/117 (58%), Positives = 86/117 (73%) Frame = +3 Query: 36 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRL 215 MGI+RD HKRRATGGK+ ++KK+K +GR ANTRLG R+H VR R G K RALRL Sbjct: 1 MGITRDSRHKRRATGGKKNSMQKKKKNTMGRQPANTRLGAIRVHDVRCRYGIIKRRALRL 60 Query: 216 DTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHY 386 + GNFSW S+ T+ T+I++VVYNAS+N+ VRT TLVK AI+ +D PFR W+ Y Sbjct: 61 ENGNFSWASQSITKGTKILNVVYNASDNDFVRTNTLVKGAIIEIDPAPFRLWFLKFY 117 >UniRef50_A6RAQ0 Cluster: Ribosomal protein S8; n=1; Ajellomyces capsulatus NAm1|Rep: Ribosomal protein S8 - Ajellomyces capsulatus NAm1 Length = 141 Score = 116 bits (278), Expect = 3e-25 Identities = 54/81 (66%), Positives = 63/81 (77%) Frame = +3 Query: 36 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRL 215 MGISRD HKR ATG KR+ RKKR +E GR ANTR+GP+RIH VR+RGGN K+R LRL Sbjct: 1 MGISRDSRHKRSATGAKRSHYRKKRAFEKGRQPANTRIGPKRIHLVRTRGGNQKFRGLRL 60 Query: 216 DTGNFSWGSECSTRKTRIIDV 278 ++GNFSWGSE RK R+I V Sbjct: 61 ESGNFSWGSEGIARKVRVIVV 81 >UniRef50_Q7R1W8 Cluster: Ribosomal protein S8; n=1; Giardia lamblia ATCC 50803|Rep: Ribosomal protein S8 - Giardia lamblia ATCC 50803 Length = 174 Score = 115 bits (276), Expect = 5e-25 Identities = 59/119 (49%), Positives = 77/119 (64%), Gaps = 9/119 (7%) Frame = +3 Query: 36 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRL---------GPQRIHSVRSRGG 188 MGI+ D +KR TG + KKRKY LGR ANT+L Q+I ++R RGG Sbjct: 1 MGITHDKMYKRSKTGAVQGKWHKKRKYNLGRQPANTKLIVKVTSKKNEGQKISTIRCRGG 60 Query: 189 NTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFR 365 N K RALRL G+F+WGS + K RI+ VVYN+++NELVRT TLVK +V +D+ PF+ Sbjct: 61 NIKRRALRLSHGSFAWGSADISHKARILQVVYNSTSNELVRTNTLVKGCVVQIDSAPFK 119 >UniRef50_Q8SWC9 Cluster: Ribosomal protein S8; n=1; Encephalitozoon cuniculi|Rep: Ribosomal protein S8 - Encephalitozoon cuniculi Length = 173 Score = 104 bits (250), Expect = 8e-22 Identities = 50/110 (45%), Positives = 72/110 (65%) Frame = +3 Query: 36 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRL 215 MGI+ HKRR TG K RKKR G ++T++G +++ VR RGGN KY+ALRL Sbjct: 1 MGINHRGDHKRRKTGAKAVISRKKRNNRAGSQPSSTKIGERKVTPVRVRGGNRKYKALRL 60 Query: 216 DTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFR 365 D G+F + + R +++ VVY+ S+NELVRT TL K+++V + A PF+ Sbjct: 61 DMGHFKFITTGKFRMAKLLQVVYHPSSNELVRTNTLTKSSVVKISAEPFK 110 >UniRef50_Q9AW20 Cluster: 40S ribosomal protein S8; n=1; Guillardia theta|Rep: 40S ribosomal protein S8 - Guillardia theta (Cryptomonas phi) Length = 178 Score = 101 bits (241), Expect = 1e-20 Identities = 51/105 (48%), Positives = 71/105 (67%) Frame = +3 Query: 36 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRL 215 MGI+R+ HKR++TGG ++ RKKR + GR +NT++G + + +R RGG K RAL L Sbjct: 1 MGINREGLHKRKSTGGLKSCWRKKRNHAKGRQPSNTKIGRRCVVKLRVRGGGVKTRALFL 60 Query: 216 DTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVD 350 GNFS+ S T K +I+ V +N S+NELVRT TL K +IV +D Sbjct: 61 SYGNFSFVSIQRTFKAKILSVAFNESSNELVRTNTLTKGSIVYLD 105 >UniRef50_Q3LVX9 Cluster: Ribosomal protein S8; n=1; Bigelowiella natans|Rep: Ribosomal protein S8 - Bigelowiella natans (Pedinomonas minutissima) (Chlorarachnion sp.(strain CCMP 621)) Length = 176 Score = 77.0 bits (181), Expect = 2e-13 Identities = 37/101 (36%), Positives = 60/101 (59%), Gaps = 1/101 (0%) Frame = +3 Query: 63 KRRATGGKRAPIRKKRKYELGRPAANTRLGPQR-IHSVRSRGGNTKYRALRLDTGNFSWG 239 K++ TGGK+ I KK+ + G NT L I R RGGN K++A+ L G+F W Sbjct: 3 KKKLTGGKKKKISKKKNHSKGNNPTNTVLRRANFIKMTRVRGGNFKFKAISLGKGSFQWK 62 Query: 240 SECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPF 362 + ++ ++I+ V+YN +N +LV+ + L K I+ +D+ PF Sbjct: 63 TMQLSKNSKILSVLYNQANLKLVQKRNLSKGTIIKIDSMPF 103 >UniRef50_Q6L0D3 Cluster: 30S ribosomal protein S8e; n=7; Archaea|Rep: 30S ribosomal protein S8e - Picrophilus torridus Length = 125 Score = 67.7 bits (158), Expect = 1e-10 Identities = 33/92 (35%), Positives = 52/92 (56%) Frame = +3 Query: 66 RRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSE 245 R+ +GGK P KR+YELGR TRLG + + +RS GGN+K+ LR D N + Sbjct: 10 RKPSGGKLRPNHSKRRYELGREPTLTRLGDRELRKIRSYGGNSKFALLRCDYANVYNPKD 69 Query: 246 CSTRKTRIIDVVYNASNNELVRTKTLVKNAIV 341 +TRK +I V N+++ V+ + + ++ Sbjct: 70 KTTRKVKINTVKENSADPHYVQRNIMNRGTVI 101 >UniRef50_A3CSQ2 Cluster: 30S ribosomal protein S8e; n=5; Archaea|Rep: 30S ribosomal protein S8e - Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) Length = 125 Score = 66.1 bits (154), Expect = 3e-10 Identities = 36/92 (39%), Positives = 54/92 (58%) Frame = +3 Query: 66 RRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSE 245 R+ +GG+ + K++ E+GR A T +G +R VR+ GGN K RALRL+ S + Sbjct: 9 RKPSGGRYHTSQGKKRTEIGRAPAETHIGEERRRIVRTFGGNQKVRALRLEYATVSNPAT 68 Query: 246 CSTRKTRIIDVVYNASNNELVRTKTLVKNAIV 341 T+KT+I V N+++ VR K L K AI+ Sbjct: 69 GETKKTKIEAVEANSADPNYVRRKLLTKGAII 100 >UniRef50_Q9HJD0 Cluster: 30S ribosomal protein S8e; n=5; Euryarchaeota|Rep: 30S ribosomal protein S8e - Thermoplasma acidophilum Length = 127 Score = 62.5 bits (145), Expect = 4e-09 Identities = 34/96 (35%), Positives = 51/96 (53%), Gaps = 1/96 (1%) Frame = +3 Query: 66 RRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSV-RSRGGNTKYRALRLDTGNFSWGS 242 ++ATGG RKKR++ELGR T+LG + V R+ GGNTK +T N S Sbjct: 10 KKATGGSLKQSRKKRRFELGREPTLTKLGTKTERKVIRTMGGNTKVILFTAETANVYDAS 69 Query: 243 ECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVD 350 E +K +II V N +N+ V+ + K ++ + Sbjct: 70 EKKIKKAKIITVKANPANSHYVQRNIINKGTVIATE 105 >UniRef50_O58830 Cluster: 30S ribosomal protein S8e; n=6; Archaea|Rep: 30S ribosomal protein S8e - Pyrococcus horikoshii Length = 127 Score = 57.2 bits (132), Expect = 2e-07 Identities = 34/93 (36%), Positives = 49/93 (52%), Gaps = 1/93 (1%) Frame = +3 Query: 66 RRATGGKRAPIRKKRKYELGRPAANTRLGPQ-RIHSVRSRGGNTKYRALRLDTGNFSWGS 242 ++ +GG+ RKKRK ELGR +NTR+ Q + +R+ GGN K R N + Sbjct: 10 KKPSGGRIVLARKKRKRELGREPSNTRVAEQDKRKIIRTYGGNRKVRLTAAAYANV-FDK 68 Query: 243 ECSTRKTRIIDVVYNASNNELVRTKTLVKNAIV 341 RK RII V+ N +N + R + K AI+ Sbjct: 69 SGKGRKVRIIRVLENPANRQFARRNIITKGAII 101 >UniRef50_Q0W1L5 Cluster: 30S ribosomal protein S8e; n=3; Euryarchaeota|Rep: 30S ribosomal protein S8e - Uncultured methanogenic archaeon RC-I Length = 125 Score = 56.4 bits (130), Expect = 3e-07 Identities = 31/95 (32%), Positives = 46/95 (48%) Frame = +3 Query: 66 RRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSE 245 R+ATGG+ R KRK+ELGR +G Q++ + G +K R L+ D N + Sbjct: 9 RKATGGRLRLNRSKRKFELGRDFTIPVIGAQKLKVLNVTGNGSKVRVLKSDVVNVTDPKT 68 Query: 246 CSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVD 350 T+K ++ V N +N VR L K V + Sbjct: 69 GKTQKVKMTTVTENPANKNYVRRNFLTKGTFVTTE 103 >UniRef50_Q980W3 Cluster: 30S ribosomal protein S8e; n=4; Archaea|Rep: 30S ribosomal protein S8e - Sulfolobus solfataricus Length = 133 Score = 56.0 bits (129), Expect = 4e-07 Identities = 31/97 (31%), Positives = 50/97 (51%), Gaps = 1/97 (1%) Frame = +3 Query: 66 RRATGGKRAPIRKKRKYELGRPAANTRLGPQRIH-SVRSRGGNTKYRALRLDTGNFSWGS 242 R+ TGG + R KRKYE+G P T L + I R+ GGN K R T N + Sbjct: 10 RKITGGLKGKHRDKRKYEIGNPPTFTTLSAEDIRIKDRTLGGNFKVRLKYTTTANVLDPA 69 Query: 243 ECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDA 353 + +K +I++++ +N EL R +++ A + +A Sbjct: 70 TNTAKKVKILEILETPANKELARRGIIIRGAKIRTEA 106 >UniRef50_Q8TV55 Cluster: 30S ribosomal protein S8e; n=1; Methanopyrus kandleri|Rep: 30S ribosomal protein S8e - Methanopyrus kandleri Length = 133 Score = 53.6 bits (123), Expect = 2e-06 Identities = 35/100 (35%), Positives = 51/100 (51%), Gaps = 5/100 (5%) Frame = +3 Query: 57 WHKR---RATGGKRAPIRKKRKYELGRPAANTRLGPQR-IHSVRSRGGNTKYRALRLDT- 221 WH R + TGG+ P RKKRK+E+G P T +G +R + R GGN K + L+ T Sbjct: 4 WHGRSLRKPTGGRIRPHRKKRKFEMGNPPTETLVGEERKLKERRGMGGNVK-KGLKFATH 62 Query: 222 GNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIV 341 N + + RI +VV N ++ R + K AI+ Sbjct: 63 ANVADPETGEVKCVRIEEVVKNPASQYYERHGVITKGAII 102 >UniRef50_Q9YDY0 Cluster: 30S ribosomal protein S8e; n=3; Desulfurococcales|Rep: 30S ribosomal protein S8e - Aeropyrum pernix Length = 136 Score = 51.2 bits (117), Expect = 1e-05 Identities = 37/107 (34%), Positives = 54/107 (50%), Gaps = 5/107 (4%) Frame = +3 Query: 36 MGISRDHWH-KRRATGGKRAPIRK-KRKYELGRPAANTRLG---PQRIHSVRSRGGNTKY 200 MGI + W K++ +GGKR K KRKY GRP T L + VR+RGG+ K Sbjct: 1 MGIYQ--WRDKKKPSGGKRRYYYKVKRKYAAGRPPTYTTLSAAEEEERKPVRARGGSYKI 58 Query: 201 RALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIV 341 +A ++ S RK RI+ +V ++ E R +VK A++ Sbjct: 59 KAKKVAFAVVSNPKTGEARKARILRIVETPAHREYARRGIIVKGAVI 105 >UniRef50_A0RXG5 Cluster: Ribosomal protein S8E; n=2; Thermoprotei|Rep: Ribosomal protein S8E - Cenarchaeum symbiosum Length = 129 Score = 50.4 bits (115), Expect = 2e-05 Identities = 27/91 (29%), Positives = 47/91 (51%) Frame = +3 Query: 69 RATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSEC 248 + TGG+R P+R +RKYE+ R G Q + + RG TK +D N + Sbjct: 12 KLTGGRRHPLRTRRKYEIDRYPNEALSGAQETVTRKVRGKRTKTALKTIDFVNLA-VQGA 70 Query: 249 STRKTRIIDVVYNASNNELVRTKTLVKNAIV 341 +K++I+ V+ N +NN+ R + + A++ Sbjct: 71 KVKKSKIVKVLENPTNNDYRRRGVITRGAVL 101 >UniRef50_P61300 Cluster: 30S ribosomal protein S8e; n=5; Methanococcus|Rep: 30S ribosomal protein S8e - Methanococcus maripaludis Length = 128 Score = 50.4 bits (115), Expect = 2e-05 Identities = 29/94 (30%), Positives = 48/94 (51%), Gaps = 1/94 (1%) Frame = +3 Query: 63 KRRATGGKRAPIRKKRKYELGRPAANTRLGPQ-RIHSVRSRGGNTKYRALRLDTGNFSWG 239 +R +TG K KK K E+GRPAA T++ + + VR RG N K + + + N Sbjct: 9 RRLSTGAKVWRAAKKHKREMGRPAAETQVSDKIKRKIVRCRGANLKVKLEKTNYANVFDQ 68 Query: 240 SECSTRKTRIIDVVYNASNNELVRTKTLVKNAIV 341 + +K + +V+ N +N +R + K AI+ Sbjct: 69 ANKVCKKVVVTNVIDNKANKHYIRRNVMTKGAII 102 >UniRef50_Q2NEU6 Cluster: 30S ribosomal protein S8e; n=1; Methanosphaera stadtmanae DSM 3091|Rep: 30S ribosomal protein S8e - Methanosphaera stadtmanae (strain DSM 3091) Length = 126 Score = 48.4 bits (110), Expect = 7e-05 Identities = 28/92 (30%), Positives = 45/92 (48%) Frame = +3 Query: 66 RRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSE 245 R+ +G + + KR E GR A TR+G + + +RG TK RA N + Sbjct: 10 RKPSGARSRRNKNKRNAEFGRNPAETRIGDEVKKEIVARGNCTKTRATVAKRINVIDPKD 69 Query: 246 CSTRKTRIIDVVYNASNNELVRTKTLVKNAIV 341 S++ ++ V+ N +N+ VR + K AIV Sbjct: 70 NSSKNVEMLTVLENGANSHFVRRNIITKGAIV 101 >UniRef50_Q8ZTB8 Cluster: 30S ribosomal protein S8e; n=6; Archaea|Rep: 30S ribosomal protein S8e - Pyrobaculum aerophilum Length = 131 Score = 46.0 bits (104), Expect = 4e-04 Identities = 28/94 (29%), Positives = 45/94 (47%), Gaps = 2/94 (2%) Frame = +3 Query: 66 RRATGGKRAPIRKKRKYEL-GRPAANTRLGPQRIHSV-RSRGGNTKYRALRLDTGNFSWG 239 ++ +GGK+ +RK +K L G P +LG V R RGGN K R N Sbjct: 13 KKPSGGKKRKVRKTKKKALGGGPPQIPKLGENDTRIVERVRGGNLKVRLREAKFANVYIP 72 Query: 240 SECSTRKTRIIDVVYNASNNELVRTKTLVKNAIV 341 E + K +II ++ +N + R +VK +++ Sbjct: 73 KERKSVKAKIISIISTPANPDFARRNFIVKGSVI 106 >UniRef50_A1RX37 Cluster: Ribosomal protein S8e; n=1; Thermofilum pendens Hrk 5|Rep: Ribosomal protein S8e - Thermofilum pendens (strain Hrk 5) Length = 128 Score = 38.7 bits (86), Expect = 0.058 Identities = 29/94 (30%), Positives = 42/94 (44%), Gaps = 2/94 (2%) Frame = +3 Query: 66 RRATGG-KRAPIRKKRKYELGR-PAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWG 239 R+ TGG K ++ KRKY GR P + V++RG K + N Sbjct: 10 RKITGGIKGRHVKTKRKYLSGRYPILTVPGQATEVKVVKARGNTYKLKVKVASEVNVYIP 69 Query: 240 SECSTRKTRIIDVVYNASNNELVRTKTLVKNAIV 341 E T + +II V+ N SN + R + K AI+ Sbjct: 70 KEGKTVRAQIIKVLDNPSNKDFARRGIISKGAIL 103 >UniRef50_Q2W531 Cluster: TPR repeat; n=3; Magnetospirillum|Rep: TPR repeat - Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) Length = 556 Score = 36.7 bits (81), Expect = 0.23 Identities = 17/37 (45%), Positives = 21/37 (56%) Frame = +3 Query: 72 ATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSR 182 A G +RAP K YE R AA TRL P + ++R R Sbjct: 268 ALGAERAPANLKANYEKERDAAGTRLSPAELEALRGR 304 >UniRef50_Q9VL72 Cluster: CG5899-PA, isoform A; n=5; Diptera|Rep: CG5899-PA, isoform A - Drosophila melanogaster (Fruit fly) Length = 844 Score = 35.5 bits (78), Expect = 0.54 Identities = 25/73 (34%), Positives = 34/73 (46%), Gaps = 5/73 (6%) Frame = +3 Query: 240 SECSTRKT----RIIDVVYNASNNELVRTKTLV-KNAIVVVDATPFRQWYESHYTLPLGR 404 SE ST+ T ++ + AS EL KTL K A+ ++D PF W + L R Sbjct: 174 SEMSTKMTGQRKKVFQFMNEASLIELQSVKTLSEKKALAIIDVRPFSDWSDLRQKLESIR 233 Query: 405 KXGAKLTXAEEAI 443 G L A+E I Sbjct: 234 MSGDLLNYAQELI 246 >UniRef50_UPI0000DB7956 Cluster: PREDICTED: similar to Deformed CG2189-PA; n=1; Apis mellifera|Rep: PREDICTED: similar to Deformed CG2189-PA - Apis mellifera Length = 284 Score = 34.7 bits (76), Expect = 0.94 Identities = 19/49 (38%), Positives = 26/49 (53%) Frame = +1 Query: 52 ITGISEGPPVGNVRPYARRGSMS*GVPLQTPGSVLSVSTPFVHVVEILS 198 +TG+ EGPP G + GS+S P +P + L VS P +H I S Sbjct: 230 VTGMMEGPPGGGPLGHIASGSISPLAPATSPSATLQVSAP-IHPPPIKS 277 >UniRef50_UPI0000F32D0C Cluster: Zinc finger CCCH domain-containing protein 6.; n=1; Bos taurus|Rep: Zinc finger CCCH domain-containing protein 6. - Bos Taurus Length = 770 Score = 34.3 bits (75), Expect = 1.2 Identities = 20/37 (54%), Positives = 23/37 (62%) Frame = +1 Query: 49 GITGISEGPPVGNVRPYARRGSMS*GVPLQTPGSVLS 159 G S GP G + PYA + S S G+PL TPGSVLS Sbjct: 595 GAVPSSSGP--GALPPYAPKLSSSTGLPLGTPGSVLS 629 >UniRef50_Q5C1R4 Cluster: SJCHGC03085 protein; n=1; Schistosoma japonicum|Rep: SJCHGC03085 protein - Schistosoma japonicum (Blood fluke) Length = 120 Score = 33.1 bits (72), Expect = 2.9 Identities = 13/25 (52%), Positives = 17/25 (68%) Frame = +3 Query: 327 KNAIVVVDATPFRQWYESHYTLPLG 401 K+AIV + PFRQW+E+ Y LG Sbjct: 1 KSAIVQIGGAPFRQWFEAPYLKELG 25 >UniRef50_A7D873 Cluster: Exodeoxyribonuclease III Xth; n=2; Methylobacterium extorquens PA1|Rep: Exodeoxyribonuclease III Xth - Methylobacterium extorquens PA1 Length = 344 Score = 32.7 bits (71), Expect = 3.8 Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 1/71 (1%) Frame = +3 Query: 69 RATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRL-DTGNFSWGSE 245 R G+R P+R++ + E RP A+ R P H+ R+R G R L + + F + S Sbjct: 7 RGLAGRRGPLRRRGRRERLRPLADDR-RPALRHAARARPGGGGGRGLTVCEARRFRYRSG 65 Query: 246 CSTRKTRIIDV 278 S ++ I V Sbjct: 66 SSRHASQAIPV 76 >UniRef50_A7Q5T2 Cluster: Chromosome chr14 scaffold_54, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr14 scaffold_54, whole genome shotgun sequence - Vitis vinifera (Grape) Length = 110 Score = 32.7 bits (71), Expect = 3.8 Identities = 21/42 (50%), Positives = 24/42 (57%) Frame = +3 Query: 300 ELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRKXGAKLT 425 ELVRT+TLVKNAI+ Q Y HY L +G K A T Sbjct: 31 ELVRTQTLVKNAII--------QRYLQHYGLDIGCKKKASTT 64 >UniRef50_A7F1W3 Cluster: Putative uncharacterized protein; n=1; Sclerotinia sclerotiorum 1980|Rep: Putative uncharacterized protein - Sclerotinia sclerotiorum 1980 Length = 622 Score = 32.3 bits (70), Expect = 5.0 Identities = 14/30 (46%), Positives = 18/30 (60%) Frame = -3 Query: 304 NSLLDALYTTSMIRVLRVEHSDPQEKLPVS 215 N L D +Y T I +R EH DP++ LP S Sbjct: 309 NLLFDTIYATPPIARVRSEHEDPRDNLPDS 338 >UniRef50_Q10SH0 Cluster: Fizzy-related protein, putative, expressed; n=4; Oryza sativa|Rep: Fizzy-related protein, putative, expressed - Oryza sativa subsp. japonica (Rice) Length = 523 Score = 31.9 bits (69), Expect = 6.6 Identities = 16/61 (26%), Positives = 31/61 (50%) Frame = +3 Query: 162 IHSVRSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIV 341 +H + + GG T R +R + C +++ ++V++ + NELV T +N I+ Sbjct: 392 LHGLLASGGGTADRCIRFWNTTTNMHLNCVDTGSQVCNLVWSKNVNELVSTHGYSQNQII 451 Query: 342 V 344 V Sbjct: 452 V 452 >UniRef50_Q3SAD8 Cluster: Putative uncharacterized protein; n=1; uncultured euryarchaeote Alv-FOS1|Rep: Putative uncharacterized protein - uncultured euryarchaeote Alv-FOS1 Length = 484 Score = 31.9 bits (69), Expect = 6.6 Identities = 15/57 (26%), Positives = 26/57 (45%) Frame = +3 Query: 168 SVRSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAI 338 +V++ G + + L N +W + R + + V N + N R T+VKN I Sbjct: 229 TVKNMGTSPGWANLTFSIDNHTWSNNIYVRSEKTVHVALNVTRNGTFRLTTVVKNDI 285 >UniRef50_Q06068 Cluster: 97 kDa heat shock protein; n=3; Strongylocentrotus|Rep: 97 kDa heat shock protein - Strongylocentrotus purpuratus (Purple sea urchin) Length = 889 Score = 31.9 bits (69), Expect = 6.6 Identities = 22/91 (24%), Positives = 41/91 (45%) Frame = +3 Query: 90 APIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSECSTRKTRI 269 A + K+ + L T+L P+ IHS+ GG+++ +++ +T + ECST + Sbjct: 311 AELLKRVEVPLKSVLEQTKLKPEDIHSIEIVGGSSRIPSIK-ETIKKVFKKECSTTLNQD 369 Query: 270 IDVVYNASNNELVRTKTLVKNAIVVVDATPF 362 V + + + T V D TP+ Sbjct: 370 EAVARGCALQCAILSPTFKVRDFTVTDLTPY 400 >UniRef50_Q89D60 Cluster: Blr7583 protein; n=1; Bradyrhizobium japonicum|Rep: Blr7583 protein - Bradyrhizobium japonicum Length = 261 Score = 31.5 bits (68), Expect = 8.8 Identities = 10/22 (45%), Positives = 15/22 (68%) Frame = +3 Query: 336 IVVVDATPFRQWYESHYTLPLG 401 ++ +D PFR+W + TLPLG Sbjct: 22 VIAIDGDPFREWQRTSRTLPLG 43 >UniRef50_Q5YW59 Cluster: Putative phosphoglycerate mutase; n=2; Actinomycetales|Rep: Putative phosphoglycerate mutase - Nocardia farcinica Length = 234 Score = 31.5 bits (68), Expect = 8.8 Identities = 21/50 (42%), Positives = 23/50 (46%) Frame = +3 Query: 57 WHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRA 206 W RA +R R+ EL PAA RL PQ H R R G YRA Sbjct: 102 WSPPRAVLDERLRDREMGVLELHPPAAIRRLAPQEAHR-RIRQGEWAYRA 150 >UniRef50_A4XD62 Cluster: Squalene/phytoene synthase; n=1; Salinispora tropica CNB-440|Rep: Squalene/phytoene synthase - Salinispora tropica CNB-440 Length = 312 Score = 31.5 bits (68), Expect = 8.8 Identities = 15/39 (38%), Positives = 22/39 (56%) Frame = +3 Query: 24 DPTKMGISRDHWHKRRATGGKRAPIRKKRKYELGRPAAN 140 D T+ G++RD RA G PIR+ +YE+ R A+ Sbjct: 189 DLTRFGVTRDDLLAARAAGRTSEPIRELIRYEVARAQAH 227 >UniRef50_A0WA04 Cluster: Putative uncharacterized protein; n=2; Geobacter lovleyi SZ|Rep: Putative uncharacterized protein - Geobacter lovleyi SZ Length = 321 Score = 31.5 bits (68), Expect = 8.8 Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 1/40 (2%) Frame = +2 Query: 74 HRWETCAHTQEEEV*VRASRCKHQARS-SAYPLRSFTWWK 190 HRW T H+Q E + A R +A++ SA +RSF WK Sbjct: 3 HRWPTSLHSQTEAI-FHAVRSIREAKADSALGIRSFGSWK 41 Database: uniref50 Posted date: Oct 5, 2007 11:19 AM Number of letters in database: 575,637,011 Number of sequences in database: 1,657,284 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 481,729,210 Number of Sequences: 1657284 Number of extensions: 10219831 Number of successful extensions: 28171 Number of sequences better than 10.0: 42 Number of HSP's better than 10.0 without gapping: 27328 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 28153 length of database: 575,637,011 effective HSP length: 93 effective length of database: 421,509,599 effective search space used: 23604537544 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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