Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0376
(450 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q3UA25 Cluster: Bone marrow macrophage cDNA, RIKEN full... 254 9e-67
UniRef50_P62241 Cluster: 40S ribosomal protein S8; n=93; Eukaryo... 254 9e-67
UniRef50_Q8MLY8 Cluster: 40S ribosomal protein S8; n=82; Eukaryo... 219 2e-56
UniRef50_Q5JR95 Cluster: Ribosomal protein S8; n=8; Euteleostomi... 193 1e-48
UniRef50_Q08069 Cluster: 40S ribosomal protein S8; n=21; Eukaryo... 189 2e-47
UniRef50_Q4N3P0 Cluster: 40S ribosomal protein S8; n=4; Eukaryot... 186 1e-46
UniRef50_P25204 Cluster: 40S ribosomal protein S8; n=19; Eukaryo... 163 1e-39
UniRef50_Q6QP50 Cluster: Putative 40S ribosomal protein S8; n=1;... 147 1e-34
UniRef50_UPI000049933B Cluster: conserved hypothetical protein; ... 146 2e-34
UniRef50_A6RAQ0 Cluster: Ribosomal protein S8; n=1; Ajellomyces ... 116 3e-25
UniRef50_Q7R1W8 Cluster: Ribosomal protein S8; n=1; Giardia lamb... 115 5e-25
UniRef50_Q8SWC9 Cluster: Ribosomal protein S8; n=1; Encephalitoz... 104 8e-22
UniRef50_Q9AW20 Cluster: 40S ribosomal protein S8; n=1; Guillard... 101 1e-20
UniRef50_Q3LVX9 Cluster: Ribosomal protein S8; n=1; Bigelowiella... 77 2e-13
UniRef50_Q6L0D3 Cluster: 30S ribosomal protein S8e; n=7; Archaea... 68 1e-10
UniRef50_A3CSQ2 Cluster: 30S ribosomal protein S8e; n=5; Archaea... 66 3e-10
UniRef50_Q9HJD0 Cluster: 30S ribosomal protein S8e; n=5; Euryarc... 62 4e-09
UniRef50_O58830 Cluster: 30S ribosomal protein S8e; n=6; Archaea... 57 2e-07
UniRef50_Q0W1L5 Cluster: 30S ribosomal protein S8e; n=3; Euryarc... 56 3e-07
UniRef50_Q980W3 Cluster: 30S ribosomal protein S8e; n=4; Archaea... 56 4e-07
UniRef50_Q8TV55 Cluster: 30S ribosomal protein S8e; n=1; Methano... 54 2e-06
UniRef50_Q9YDY0 Cluster: 30S ribosomal protein S8e; n=3; Desulfu... 51 1e-05
UniRef50_A0RXG5 Cluster: Ribosomal protein S8E; n=2; Thermoprote... 50 2e-05
UniRef50_P61300 Cluster: 30S ribosomal protein S8e; n=5; Methano... 50 2e-05
UniRef50_Q2NEU6 Cluster: 30S ribosomal protein S8e; n=1; Methano... 48 7e-05
UniRef50_Q8ZTB8 Cluster: 30S ribosomal protein S8e; n=6; Archaea... 46 4e-04
UniRef50_A1RX37 Cluster: Ribosomal protein S8e; n=1; Thermofilum... 39 0.058
UniRef50_Q2W531 Cluster: TPR repeat; n=3; Magnetospirillum|Rep: ... 37 0.23
UniRef50_Q9VL72 Cluster: CG5899-PA, isoform A; n=5; Diptera|Rep:... 36 0.54
UniRef50_UPI0000DB7956 Cluster: PREDICTED: similar to Deformed C... 35 0.94
UniRef50_UPI0000F32D0C Cluster: Zinc finger CCCH domain-containi... 34 1.2
UniRef50_Q5C1R4 Cluster: SJCHGC03085 protein; n=1; Schistosoma j... 33 2.9
UniRef50_A7D873 Cluster: Exodeoxyribonuclease III Xth; n=2; Meth... 33 3.8
UniRef50_A7Q5T2 Cluster: Chromosome chr14 scaffold_54, whole gen... 33 3.8
UniRef50_A7F1W3 Cluster: Putative uncharacterized protein; n=1; ... 32 5.0
UniRef50_Q10SH0 Cluster: Fizzy-related protein, putative, expres... 32 6.6
UniRef50_Q3SAD8 Cluster: Putative uncharacterized protein; n=1; ... 32 6.6
UniRef50_Q06068 Cluster: 97 kDa heat shock protein; n=3; Strongy... 32 6.6
UniRef50_Q89D60 Cluster: Blr7583 protein; n=1; Bradyrhizobium ja... 31 8.8
UniRef50_Q5YW59 Cluster: Putative phosphoglycerate mutase; n=2; ... 31 8.8
UniRef50_A4XD62 Cluster: Squalene/phytoene synthase; n=1; Salini... 31 8.8
UniRef50_A0WA04 Cluster: Putative uncharacterized protein; n=2; ... 31 8.8
>UniRef50_Q3UA25 Cluster: Bone marrow macrophage cDNA, RIKEN
full-length enriched library, clone:I830031J02
product:ribosomal protein S8, full insert sequence; n=9;
Deuterostomia|Rep: Bone marrow macrophage cDNA, RIKEN
full-length enriched library, clone:I830031J02
product:ribosomal protein S8, full insert sequence - Mus
musculus (Mouse)
Length = 152
Score = 254 bits (621), Expect = 9e-67
Identities = 114/138 (82%), Positives = 124/138 (89%)
Frame = +3
Query: 36 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRL 215
MGISRD+WHKRR TGGKR P KKRKYELGRPAANT++GP+RIH+VR RGGN KYRALRL
Sbjct: 1 MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRL 60
Query: 216 DTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLP 395
D GNFSWGSEC TRKTRIIDVVYNASNNELVRTKTLVKN IV++D+TP+RQWYESHY LP
Sbjct: 61 DVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALP 120
Query: 396 LGRKXGAKLTXAEEAIIN 449
LGRK GAKLT EE I+N
Sbjct: 121 LGRKKGAKLTPEEEEILN 138
>UniRef50_P62241 Cluster: 40S ribosomal protein S8; n=93;
Eukaryota|Rep: 40S ribosomal protein S8 - Homo sapiens
(Human)
Length = 208
Score = 254 bits (621), Expect = 9e-67
Identities = 114/138 (82%), Positives = 124/138 (89%)
Frame = +3
Query: 36 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRL 215
MGISRD+WHKRR TGGKR P KKRKYELGRPAANT++GP+RIH+VR RGGN KYRALRL
Sbjct: 1 MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRL 60
Query: 216 DTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLP 395
D GNFSWGSEC TRKTRIIDVVYNASNNELVRTKTLVKN IV++D+TP+RQWYESHY LP
Sbjct: 61 DVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALP 120
Query: 396 LGRKXGAKLTXAEEAIIN 449
LGRK GAKLT EE I+N
Sbjct: 121 LGRKKGAKLTPEEEEILN 138
>UniRef50_Q8MLY8 Cluster: 40S ribosomal protein S8; n=82;
Eukaryota|Rep: 40S ribosomal protein S8 - Drosophila
melanogaster (Fruit fly)
Length = 208
Score = 219 bits (535), Expect = 2e-56
Identities = 102/134 (76%), Positives = 113/134 (84%)
Frame = +3
Query: 36 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRL 215
MGISRD HKRRATGGKR +RKKRK+ELGRPAANT+LG R+H VR+RGGNTK RALRL
Sbjct: 1 MGISRDSAHKRRATGGKRKSLRKKRKFELGRPAANTKLGSGRVHKVRTRGGNTKLRALRL 60
Query: 216 DTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLP 395
+TGNF+W SE RKTRI DVVYNASNNELVRTKTLVKN+IVV+DATPFRQWYE+HY LP
Sbjct: 61 ETGNFAWASEGVARKTRIADVVYNASNNELVRTKTLVKNSIVVIDATPFRQWYEAHYVLP 120
Query: 396 LGRKXGAKLTXAEE 437
LGRK K E+
Sbjct: 121 LGRKRNPKHAQKED 134
>UniRef50_Q5JR95 Cluster: Ribosomal protein S8; n=8;
Euteleostomi|Rep: Ribosomal protein S8 - Homo sapiens
(Human)
Length = 188
Score = 193 bits (471), Expect = 1e-48
Identities = 97/138 (70%), Positives = 107/138 (77%)
Frame = +3
Query: 36 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRL 215
MGISRD+WHKRR TGGKR P KKRKYELGRPAANT++GP+RIH+VR RGG
Sbjct: 1 MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGG--------- 51
Query: 216 DTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLP 395
C TRKTRIIDVVYNASNNELVRTKTLVKN IV++D+TP+RQWYESHY LP
Sbjct: 52 ----------C-TRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALP 100
Query: 396 LGRKXGAKLTXAEEAIIN 449
LGRK GAKLT EE I+N
Sbjct: 101 LGRKKGAKLTPEEEEILN 118
>UniRef50_Q08069 Cluster: 40S ribosomal protein S8; n=21;
Eukaryota|Rep: 40S ribosomal protein S8 - Zea mays
(Maize)
Length = 221
Score = 189 bits (461), Expect = 2e-47
Identities = 90/125 (72%), Positives = 103/125 (82%), Gaps = 1/125 (0%)
Frame = +3
Query: 36 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQR-IHSVRSRGGNTKYRALR 212
MGISRD HKRRATGGK+ RKKRKYELGR ANT+L + + VR RGGN K+RALR
Sbjct: 1 MGISRDSMHKRRATGGKQKAWRKKRKYELGRQPANTKLSSNKTVRRVRVRGGNVKWRALR 60
Query: 213 LDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTL 392
LDTGN+SWGSE TRKTRI+DVVYNASNNELVRT+TLVK+AIV VDA PF+QWY +HY +
Sbjct: 61 LDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLTHYGV 120
Query: 393 PLGRK 407
+GRK
Sbjct: 121 DIGRK 125
>UniRef50_Q4N3P0 Cluster: 40S ribosomal protein S8; n=4;
Eukaryota|Rep: 40S ribosomal protein S8 - Theileria
parva
Length = 188
Score = 186 bits (454), Expect = 1e-46
Identities = 85/123 (69%), Positives = 103/123 (83%)
Frame = +3
Query: 36 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRL 215
MGISRD HKRR TGG+ +KKRKYELGRP++NT+LG + + VR RGGN K+RALRL
Sbjct: 1 MGISRDSRHKRRLTGGRYPVHKKKRKYELGRPSSNTKLGSKLVRKVRCRGGNLKFRALRL 60
Query: 216 DTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLP 395
D+GNFSWGS+ TRKTR++DVVYNAS+NELVRTKTLVKNAIV VD TPF+ W+++HY L
Sbjct: 61 DSGNFSWGSQNVTRKTRVMDVVYNASSNELVRTKTLVKNAIVTVDPTPFKLWFKTHYGLE 120
Query: 396 LGR 404
LG+
Sbjct: 121 LGK 123
>UniRef50_P25204 Cluster: 40S ribosomal protein S8; n=19;
Eukaryota|Rep: 40S ribosomal protein S8 - Leishmania
major
Length = 220
Score = 163 bits (397), Expect = 1e-39
Identities = 80/135 (59%), Positives = 94/135 (69%), Gaps = 1/135 (0%)
Frame = +3
Query: 36 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRL 215
MGI R HKR+ TGGK RK+ K ELGR ANTRLG +R+ VR+RGGN K RALRL
Sbjct: 1 MGIVRSRLHKRKITGGKTKIHRKRMKAELGRLPANTRLGARRVSPVRARGGNFKIRALRL 60
Query: 216 DTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLP 395
DTGNF+W SE + R++DVVYNA++NELVRTKTLVKN IV VDA PF++WY HY +
Sbjct: 61 DTGNFAWASEAIAHRVRLLDVVYNATSNELVRTKTLVKNCIVAVDAAPFKRWYAKHYGID 120
Query: 396 L-GRKXGAKLTXAEE 437
L K K A E
Sbjct: 121 LDADKKSTKAAVAAE 135
>UniRef50_Q6QP50 Cluster: Putative 40S ribosomal protein S8; n=1;
Zea mays|Rep: Putative 40S ribosomal protein S8 - Zea
mays (Maize)
Length = 245
Score = 147 bits (356), Expect = 1e-34
Identities = 69/110 (62%), Positives = 87/110 (79%), Gaps = 1/110 (0%)
Frame = +3
Query: 81 GKRAPIRKKRKYELGRPAANTRLGPQR-IHSVRSRGGNTKYRALRLDTGNFSWGSECSTR 257
G P+++++ YELGR ANT+L + + VR RGGNTK+RALR DT N+SWGSE TR
Sbjct: 113 GPFCPLQEEQGYELGRQPANTKLSSNKTVRRVRVRGGNTKWRALRFDTCNYSWGSEALTR 172
Query: 258 KTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRK 407
KTRI+DVVY A+NNELVRT+TLVK+AIV VDA PF+QWY +HY + +GRK
Sbjct: 173 KTRILDVVYIATNNELVRTQTLVKSAIVQVDAAPFKQWYLTHYGVDIGRK 222
>UniRef50_UPI000049933B Cluster: conserved hypothetical protein;
n=3; Entamoeba histolytica HM-1:IMSS|Rep: conserved
hypothetical protein - Entamoeba histolytica HM-1:IMSS
Length = 237
Score = 146 bits (354), Expect = 2e-34
Identities = 68/117 (58%), Positives = 86/117 (73%)
Frame = +3
Query: 36 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRL 215
MGI+RD HKRRATGGK+ ++KK+K +GR ANTRLG R+H VR R G K RALRL
Sbjct: 1 MGITRDSRHKRRATGGKKNSMQKKKKNTMGRQPANTRLGAIRVHDVRCRYGIIKRRALRL 60
Query: 216 DTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHY 386
+ GNFSW S+ T+ T+I++VVYNAS+N+ VRT TLVK AI+ +D PFR W+ Y
Sbjct: 61 ENGNFSWASQSITKGTKILNVVYNASDNDFVRTNTLVKGAIIEIDPAPFRLWFLKFY 117
>UniRef50_A6RAQ0 Cluster: Ribosomal protein S8; n=1; Ajellomyces
capsulatus NAm1|Rep: Ribosomal protein S8 - Ajellomyces
capsulatus NAm1
Length = 141
Score = 116 bits (278), Expect = 3e-25
Identities = 54/81 (66%), Positives = 63/81 (77%)
Frame = +3
Query: 36 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRL 215
MGISRD HKR ATG KR+ RKKR +E GR ANTR+GP+RIH VR+RGGN K+R LRL
Sbjct: 1 MGISRDSRHKRSATGAKRSHYRKKRAFEKGRQPANTRIGPKRIHLVRTRGGNQKFRGLRL 60
Query: 216 DTGNFSWGSECSTRKTRIIDV 278
++GNFSWGSE RK R+I V
Sbjct: 61 ESGNFSWGSEGIARKVRVIVV 81
>UniRef50_Q7R1W8 Cluster: Ribosomal protein S8; n=1; Giardia lamblia
ATCC 50803|Rep: Ribosomal protein S8 - Giardia lamblia
ATCC 50803
Length = 174
Score = 115 bits (276), Expect = 5e-25
Identities = 59/119 (49%), Positives = 77/119 (64%), Gaps = 9/119 (7%)
Frame = +3
Query: 36 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRL---------GPQRIHSVRSRGG 188
MGI+ D +KR TG + KKRKY LGR ANT+L Q+I ++R RGG
Sbjct: 1 MGITHDKMYKRSKTGAVQGKWHKKRKYNLGRQPANTKLIVKVTSKKNEGQKISTIRCRGG 60
Query: 189 NTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFR 365
N K RALRL G+F+WGS + K RI+ VVYN+++NELVRT TLVK +V +D+ PF+
Sbjct: 61 NIKRRALRLSHGSFAWGSADISHKARILQVVYNSTSNELVRTNTLVKGCVVQIDSAPFK 119
>UniRef50_Q8SWC9 Cluster: Ribosomal protein S8; n=1; Encephalitozoon
cuniculi|Rep: Ribosomal protein S8 - Encephalitozoon
cuniculi
Length = 173
Score = 104 bits (250), Expect = 8e-22
Identities = 50/110 (45%), Positives = 72/110 (65%)
Frame = +3
Query: 36 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRL 215
MGI+ HKRR TG K RKKR G ++T++G +++ VR RGGN KY+ALRL
Sbjct: 1 MGINHRGDHKRRKTGAKAVISRKKRNNRAGSQPSSTKIGERKVTPVRVRGGNRKYKALRL 60
Query: 216 DTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFR 365
D G+F + + R +++ VVY+ S+NELVRT TL K+++V + A PF+
Sbjct: 61 DMGHFKFITTGKFRMAKLLQVVYHPSSNELVRTNTLTKSSVVKISAEPFK 110
>UniRef50_Q9AW20 Cluster: 40S ribosomal protein S8; n=1; Guillardia
theta|Rep: 40S ribosomal protein S8 - Guillardia theta
(Cryptomonas phi)
Length = 178
Score = 101 bits (241), Expect = 1e-20
Identities = 51/105 (48%), Positives = 71/105 (67%)
Frame = +3
Query: 36 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRL 215
MGI+R+ HKR++TGG ++ RKKR + GR +NT++G + + +R RGG K RAL L
Sbjct: 1 MGINREGLHKRKSTGGLKSCWRKKRNHAKGRQPSNTKIGRRCVVKLRVRGGGVKTRALFL 60
Query: 216 DTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVD 350
GNFS+ S T K +I+ V +N S+NELVRT TL K +IV +D
Sbjct: 61 SYGNFSFVSIQRTFKAKILSVAFNESSNELVRTNTLTKGSIVYLD 105
>UniRef50_Q3LVX9 Cluster: Ribosomal protein S8; n=1; Bigelowiella
natans|Rep: Ribosomal protein S8 - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 176
Score = 77.0 bits (181), Expect = 2e-13
Identities = 37/101 (36%), Positives = 60/101 (59%), Gaps = 1/101 (0%)
Frame = +3
Query: 63 KRRATGGKRAPIRKKRKYELGRPAANTRLGPQR-IHSVRSRGGNTKYRALRLDTGNFSWG 239
K++ TGGK+ I KK+ + G NT L I R RGGN K++A+ L G+F W
Sbjct: 3 KKKLTGGKKKKISKKKNHSKGNNPTNTVLRRANFIKMTRVRGGNFKFKAISLGKGSFQWK 62
Query: 240 SECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPF 362
+ ++ ++I+ V+YN +N +LV+ + L K I+ +D+ PF
Sbjct: 63 TMQLSKNSKILSVLYNQANLKLVQKRNLSKGTIIKIDSMPF 103
>UniRef50_Q6L0D3 Cluster: 30S ribosomal protein S8e; n=7;
Archaea|Rep: 30S ribosomal protein S8e - Picrophilus
torridus
Length = 125
Score = 67.7 bits (158), Expect = 1e-10
Identities = 33/92 (35%), Positives = 52/92 (56%)
Frame = +3
Query: 66 RRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSE 245
R+ +GGK P KR+YELGR TRLG + + +RS GGN+K+ LR D N +
Sbjct: 10 RKPSGGKLRPNHSKRRYELGREPTLTRLGDRELRKIRSYGGNSKFALLRCDYANVYNPKD 69
Query: 246 CSTRKTRIIDVVYNASNNELVRTKTLVKNAIV 341
+TRK +I V N+++ V+ + + ++
Sbjct: 70 KTTRKVKINTVKENSADPHYVQRNIMNRGTVI 101
>UniRef50_A3CSQ2 Cluster: 30S ribosomal protein S8e; n=5;
Archaea|Rep: 30S ribosomal protein S8e - Methanoculleus
marisnigri (strain ATCC 35101 / DSM 1498 / JR1)
Length = 125
Score = 66.1 bits (154), Expect = 3e-10
Identities = 36/92 (39%), Positives = 54/92 (58%)
Frame = +3
Query: 66 RRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSE 245
R+ +GG+ + K++ E+GR A T +G +R VR+ GGN K RALRL+ S +
Sbjct: 9 RKPSGGRYHTSQGKKRTEIGRAPAETHIGEERRRIVRTFGGNQKVRALRLEYATVSNPAT 68
Query: 246 CSTRKTRIIDVVYNASNNELVRTKTLVKNAIV 341
T+KT+I V N+++ VR K L K AI+
Sbjct: 69 GETKKTKIEAVEANSADPNYVRRKLLTKGAII 100
>UniRef50_Q9HJD0 Cluster: 30S ribosomal protein S8e; n=5;
Euryarchaeota|Rep: 30S ribosomal protein S8e -
Thermoplasma acidophilum
Length = 127
Score = 62.5 bits (145), Expect = 4e-09
Identities = 34/96 (35%), Positives = 51/96 (53%), Gaps = 1/96 (1%)
Frame = +3
Query: 66 RRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSV-RSRGGNTKYRALRLDTGNFSWGS 242
++ATGG RKKR++ELGR T+LG + V R+ GGNTK +T N S
Sbjct: 10 KKATGGSLKQSRKKRRFELGREPTLTKLGTKTERKVIRTMGGNTKVILFTAETANVYDAS 69
Query: 243 ECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVD 350
E +K +II V N +N+ V+ + K ++ +
Sbjct: 70 EKKIKKAKIITVKANPANSHYVQRNIINKGTVIATE 105
>UniRef50_O58830 Cluster: 30S ribosomal protein S8e; n=6;
Archaea|Rep: 30S ribosomal protein S8e - Pyrococcus
horikoshii
Length = 127
Score = 57.2 bits (132), Expect = 2e-07
Identities = 34/93 (36%), Positives = 49/93 (52%), Gaps = 1/93 (1%)
Frame = +3
Query: 66 RRATGGKRAPIRKKRKYELGRPAANTRLGPQ-RIHSVRSRGGNTKYRALRLDTGNFSWGS 242
++ +GG+ RKKRK ELGR +NTR+ Q + +R+ GGN K R N +
Sbjct: 10 KKPSGGRIVLARKKRKRELGREPSNTRVAEQDKRKIIRTYGGNRKVRLTAAAYANV-FDK 68
Query: 243 ECSTRKTRIIDVVYNASNNELVRTKTLVKNAIV 341
RK RII V+ N +N + R + K AI+
Sbjct: 69 SGKGRKVRIIRVLENPANRQFARRNIITKGAII 101
>UniRef50_Q0W1L5 Cluster: 30S ribosomal protein S8e; n=3;
Euryarchaeota|Rep: 30S ribosomal protein S8e -
Uncultured methanogenic archaeon RC-I
Length = 125
Score = 56.4 bits (130), Expect = 3e-07
Identities = 31/95 (32%), Positives = 46/95 (48%)
Frame = +3
Query: 66 RRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSE 245
R+ATGG+ R KRK+ELGR +G Q++ + G +K R L+ D N +
Sbjct: 9 RKATGGRLRLNRSKRKFELGRDFTIPVIGAQKLKVLNVTGNGSKVRVLKSDVVNVTDPKT 68
Query: 246 CSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVD 350
T+K ++ V N +N VR L K V +
Sbjct: 69 GKTQKVKMTTVTENPANKNYVRRNFLTKGTFVTTE 103
>UniRef50_Q980W3 Cluster: 30S ribosomal protein S8e; n=4;
Archaea|Rep: 30S ribosomal protein S8e - Sulfolobus
solfataricus
Length = 133
Score = 56.0 bits (129), Expect = 4e-07
Identities = 31/97 (31%), Positives = 50/97 (51%), Gaps = 1/97 (1%)
Frame = +3
Query: 66 RRATGGKRAPIRKKRKYELGRPAANTRLGPQRIH-SVRSRGGNTKYRALRLDTGNFSWGS 242
R+ TGG + R KRKYE+G P T L + I R+ GGN K R T N +
Sbjct: 10 RKITGGLKGKHRDKRKYEIGNPPTFTTLSAEDIRIKDRTLGGNFKVRLKYTTTANVLDPA 69
Query: 243 ECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDA 353
+ +K +I++++ +N EL R +++ A + +A
Sbjct: 70 TNTAKKVKILEILETPANKELARRGIIIRGAKIRTEA 106
>UniRef50_Q8TV55 Cluster: 30S ribosomal protein S8e; n=1;
Methanopyrus kandleri|Rep: 30S ribosomal protein S8e -
Methanopyrus kandleri
Length = 133
Score = 53.6 bits (123), Expect = 2e-06
Identities = 35/100 (35%), Positives = 51/100 (51%), Gaps = 5/100 (5%)
Frame = +3
Query: 57 WHKR---RATGGKRAPIRKKRKYELGRPAANTRLGPQR-IHSVRSRGGNTKYRALRLDT- 221
WH R + TGG+ P RKKRK+E+G P T +G +R + R GGN K + L+ T
Sbjct: 4 WHGRSLRKPTGGRIRPHRKKRKFEMGNPPTETLVGEERKLKERRGMGGNVK-KGLKFATH 62
Query: 222 GNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIV 341
N + + RI +VV N ++ R + K AI+
Sbjct: 63 ANVADPETGEVKCVRIEEVVKNPASQYYERHGVITKGAII 102
>UniRef50_Q9YDY0 Cluster: 30S ribosomal protein S8e; n=3;
Desulfurococcales|Rep: 30S ribosomal protein S8e -
Aeropyrum pernix
Length = 136
Score = 51.2 bits (117), Expect = 1e-05
Identities = 37/107 (34%), Positives = 54/107 (50%), Gaps = 5/107 (4%)
Frame = +3
Query: 36 MGISRDHWH-KRRATGGKRAPIRK-KRKYELGRPAANTRLG---PQRIHSVRSRGGNTKY 200
MGI + W K++ +GGKR K KRKY GRP T L + VR+RGG+ K
Sbjct: 1 MGIYQ--WRDKKKPSGGKRRYYYKVKRKYAAGRPPTYTTLSAAEEEERKPVRARGGSYKI 58
Query: 201 RALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIV 341
+A ++ S RK RI+ +V ++ E R +VK A++
Sbjct: 59 KAKKVAFAVVSNPKTGEARKARILRIVETPAHREYARRGIIVKGAVI 105
>UniRef50_A0RXG5 Cluster: Ribosomal protein S8E; n=2;
Thermoprotei|Rep: Ribosomal protein S8E - Cenarchaeum
symbiosum
Length = 129
Score = 50.4 bits (115), Expect = 2e-05
Identities = 27/91 (29%), Positives = 47/91 (51%)
Frame = +3
Query: 69 RATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSEC 248
+ TGG+R P+R +RKYE+ R G Q + + RG TK +D N +
Sbjct: 12 KLTGGRRHPLRTRRKYEIDRYPNEALSGAQETVTRKVRGKRTKTALKTIDFVNLA-VQGA 70
Query: 249 STRKTRIIDVVYNASNNELVRTKTLVKNAIV 341
+K++I+ V+ N +NN+ R + + A++
Sbjct: 71 KVKKSKIVKVLENPTNNDYRRRGVITRGAVL 101
>UniRef50_P61300 Cluster: 30S ribosomal protein S8e; n=5;
Methanococcus|Rep: 30S ribosomal protein S8e -
Methanococcus maripaludis
Length = 128
Score = 50.4 bits (115), Expect = 2e-05
Identities = 29/94 (30%), Positives = 48/94 (51%), Gaps = 1/94 (1%)
Frame = +3
Query: 63 KRRATGGKRAPIRKKRKYELGRPAANTRLGPQ-RIHSVRSRGGNTKYRALRLDTGNFSWG 239
+R +TG K KK K E+GRPAA T++ + + VR RG N K + + + N
Sbjct: 9 RRLSTGAKVWRAAKKHKREMGRPAAETQVSDKIKRKIVRCRGANLKVKLEKTNYANVFDQ 68
Query: 240 SECSTRKTRIIDVVYNASNNELVRTKTLVKNAIV 341
+ +K + +V+ N +N +R + K AI+
Sbjct: 69 ANKVCKKVVVTNVIDNKANKHYIRRNVMTKGAII 102
>UniRef50_Q2NEU6 Cluster: 30S ribosomal protein S8e; n=1;
Methanosphaera stadtmanae DSM 3091|Rep: 30S ribosomal
protein S8e - Methanosphaera stadtmanae (strain DSM
3091)
Length = 126
Score = 48.4 bits (110), Expect = 7e-05
Identities = 28/92 (30%), Positives = 45/92 (48%)
Frame = +3
Query: 66 RRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSE 245
R+ +G + + KR E GR A TR+G + + +RG TK RA N +
Sbjct: 10 RKPSGARSRRNKNKRNAEFGRNPAETRIGDEVKKEIVARGNCTKTRATVAKRINVIDPKD 69
Query: 246 CSTRKTRIIDVVYNASNNELVRTKTLVKNAIV 341
S++ ++ V+ N +N+ VR + K AIV
Sbjct: 70 NSSKNVEMLTVLENGANSHFVRRNIITKGAIV 101
>UniRef50_Q8ZTB8 Cluster: 30S ribosomal protein S8e; n=6;
Archaea|Rep: 30S ribosomal protein S8e - Pyrobaculum
aerophilum
Length = 131
Score = 46.0 bits (104), Expect = 4e-04
Identities = 28/94 (29%), Positives = 45/94 (47%), Gaps = 2/94 (2%)
Frame = +3
Query: 66 RRATGGKRAPIRKKRKYEL-GRPAANTRLGPQRIHSV-RSRGGNTKYRALRLDTGNFSWG 239
++ +GGK+ +RK +K L G P +LG V R RGGN K R N
Sbjct: 13 KKPSGGKKRKVRKTKKKALGGGPPQIPKLGENDTRIVERVRGGNLKVRLREAKFANVYIP 72
Query: 240 SECSTRKTRIIDVVYNASNNELVRTKTLVKNAIV 341
E + K +II ++ +N + R +VK +++
Sbjct: 73 KERKSVKAKIISIISTPANPDFARRNFIVKGSVI 106
>UniRef50_A1RX37 Cluster: Ribosomal protein S8e; n=1; Thermofilum
pendens Hrk 5|Rep: Ribosomal protein S8e - Thermofilum
pendens (strain Hrk 5)
Length = 128
Score = 38.7 bits (86), Expect = 0.058
Identities = 29/94 (30%), Positives = 42/94 (44%), Gaps = 2/94 (2%)
Frame = +3
Query: 66 RRATGG-KRAPIRKKRKYELGR-PAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWG 239
R+ TGG K ++ KRKY GR P + V++RG K + N
Sbjct: 10 RKITGGIKGRHVKTKRKYLSGRYPILTVPGQATEVKVVKARGNTYKLKVKVASEVNVYIP 69
Query: 240 SECSTRKTRIIDVVYNASNNELVRTKTLVKNAIV 341
E T + +II V+ N SN + R + K AI+
Sbjct: 70 KEGKTVRAQIIKVLDNPSNKDFARRGIISKGAIL 103
>UniRef50_Q2W531 Cluster: TPR repeat; n=3; Magnetospirillum|Rep: TPR
repeat - Magnetospirillum magneticum (strain AMB-1 /
ATCC 700264)
Length = 556
Score = 36.7 bits (81), Expect = 0.23
Identities = 17/37 (45%), Positives = 21/37 (56%)
Frame = +3
Query: 72 ATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSR 182
A G +RAP K YE R AA TRL P + ++R R
Sbjct: 268 ALGAERAPANLKANYEKERDAAGTRLSPAELEALRGR 304
>UniRef50_Q9VL72 Cluster: CG5899-PA, isoform A; n=5; Diptera|Rep:
CG5899-PA, isoform A - Drosophila melanogaster (Fruit
fly)
Length = 844
Score = 35.5 bits (78), Expect = 0.54
Identities = 25/73 (34%), Positives = 34/73 (46%), Gaps = 5/73 (6%)
Frame = +3
Query: 240 SECSTRKT----RIIDVVYNASNNELVRTKTLV-KNAIVVVDATPFRQWYESHYTLPLGR 404
SE ST+ T ++ + AS EL KTL K A+ ++D PF W + L R
Sbjct: 174 SEMSTKMTGQRKKVFQFMNEASLIELQSVKTLSEKKALAIIDVRPFSDWSDLRQKLESIR 233
Query: 405 KXGAKLTXAEEAI 443
G L A+E I
Sbjct: 234 MSGDLLNYAQELI 246
>UniRef50_UPI0000DB7956 Cluster: PREDICTED: similar to Deformed
CG2189-PA; n=1; Apis mellifera|Rep: PREDICTED: similar
to Deformed CG2189-PA - Apis mellifera
Length = 284
Score = 34.7 bits (76), Expect = 0.94
Identities = 19/49 (38%), Positives = 26/49 (53%)
Frame = +1
Query: 52 ITGISEGPPVGNVRPYARRGSMS*GVPLQTPGSVLSVSTPFVHVVEILS 198
+TG+ EGPP G + GS+S P +P + L VS P +H I S
Sbjct: 230 VTGMMEGPPGGGPLGHIASGSISPLAPATSPSATLQVSAP-IHPPPIKS 277
>UniRef50_UPI0000F32D0C Cluster: Zinc finger CCCH domain-containing
protein 6.; n=1; Bos taurus|Rep: Zinc finger CCCH
domain-containing protein 6. - Bos Taurus
Length = 770
Score = 34.3 bits (75), Expect = 1.2
Identities = 20/37 (54%), Positives = 23/37 (62%)
Frame = +1
Query: 49 GITGISEGPPVGNVRPYARRGSMS*GVPLQTPGSVLS 159
G S GP G + PYA + S S G+PL TPGSVLS
Sbjct: 595 GAVPSSSGP--GALPPYAPKLSSSTGLPLGTPGSVLS 629
>UniRef50_Q5C1R4 Cluster: SJCHGC03085 protein; n=1; Schistosoma
japonicum|Rep: SJCHGC03085 protein - Schistosoma
japonicum (Blood fluke)
Length = 120
Score = 33.1 bits (72), Expect = 2.9
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = +3
Query: 327 KNAIVVVDATPFRQWYESHYTLPLG 401
K+AIV + PFRQW+E+ Y LG
Sbjct: 1 KSAIVQIGGAPFRQWFEAPYLKELG 25
>UniRef50_A7D873 Cluster: Exodeoxyribonuclease III Xth; n=2;
Methylobacterium extorquens PA1|Rep:
Exodeoxyribonuclease III Xth - Methylobacterium
extorquens PA1
Length = 344
Score = 32.7 bits (71), Expect = 3.8
Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Frame = +3
Query: 69 RATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRL-DTGNFSWGSE 245
R G+R P+R++ + E RP A+ R P H+ R+R G R L + + F + S
Sbjct: 7 RGLAGRRGPLRRRGRRERLRPLADDR-RPALRHAARARPGGGGGRGLTVCEARRFRYRSG 65
Query: 246 CSTRKTRIIDV 278
S ++ I V
Sbjct: 66 SSRHASQAIPV 76
>UniRef50_A7Q5T2 Cluster: Chromosome chr14 scaffold_54, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr14 scaffold_54, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 110
Score = 32.7 bits (71), Expect = 3.8
Identities = 21/42 (50%), Positives = 24/42 (57%)
Frame = +3
Query: 300 ELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRKXGAKLT 425
ELVRT+TLVKNAI+ Q Y HY L +G K A T
Sbjct: 31 ELVRTQTLVKNAII--------QRYLQHYGLDIGCKKKASTT 64
>UniRef50_A7F1W3 Cluster: Putative uncharacterized protein; n=1;
Sclerotinia sclerotiorum 1980|Rep: Putative
uncharacterized protein - Sclerotinia sclerotiorum 1980
Length = 622
Score = 32.3 bits (70), Expect = 5.0
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = -3
Query: 304 NSLLDALYTTSMIRVLRVEHSDPQEKLPVS 215
N L D +Y T I +R EH DP++ LP S
Sbjct: 309 NLLFDTIYATPPIARVRSEHEDPRDNLPDS 338
>UniRef50_Q10SH0 Cluster: Fizzy-related protein, putative,
expressed; n=4; Oryza sativa|Rep: Fizzy-related protein,
putative, expressed - Oryza sativa subsp. japonica
(Rice)
Length = 523
Score = 31.9 bits (69), Expect = 6.6
Identities = 16/61 (26%), Positives = 31/61 (50%)
Frame = +3
Query: 162 IHSVRSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIV 341
+H + + GG T R +R + C +++ ++V++ + NELV T +N I+
Sbjct: 392 LHGLLASGGGTADRCIRFWNTTTNMHLNCVDTGSQVCNLVWSKNVNELVSTHGYSQNQII 451
Query: 342 V 344
V
Sbjct: 452 V 452
>UniRef50_Q3SAD8 Cluster: Putative uncharacterized protein; n=1;
uncultured euryarchaeote Alv-FOS1|Rep: Putative
uncharacterized protein - uncultured euryarchaeote
Alv-FOS1
Length = 484
Score = 31.9 bits (69), Expect = 6.6
Identities = 15/57 (26%), Positives = 26/57 (45%)
Frame = +3
Query: 168 SVRSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAI 338
+V++ G + + L N +W + R + + V N + N R T+VKN I
Sbjct: 229 TVKNMGTSPGWANLTFSIDNHTWSNNIYVRSEKTVHVALNVTRNGTFRLTTVVKNDI 285
>UniRef50_Q06068 Cluster: 97 kDa heat shock protein; n=3;
Strongylocentrotus|Rep: 97 kDa heat shock protein -
Strongylocentrotus purpuratus (Purple sea urchin)
Length = 889
Score = 31.9 bits (69), Expect = 6.6
Identities = 22/91 (24%), Positives = 41/91 (45%)
Frame = +3
Query: 90 APIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSECSTRKTRI 269
A + K+ + L T+L P+ IHS+ GG+++ +++ +T + ECST +
Sbjct: 311 AELLKRVEVPLKSVLEQTKLKPEDIHSIEIVGGSSRIPSIK-ETIKKVFKKECSTTLNQD 369
Query: 270 IDVVYNASNNELVRTKTLVKNAIVVVDATPF 362
V + + + T V D TP+
Sbjct: 370 EAVARGCALQCAILSPTFKVRDFTVTDLTPY 400
>UniRef50_Q89D60 Cluster: Blr7583 protein; n=1; Bradyrhizobium
japonicum|Rep: Blr7583 protein - Bradyrhizobium
japonicum
Length = 261
Score = 31.5 bits (68), Expect = 8.8
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +3
Query: 336 IVVVDATPFRQWYESHYTLPLG 401
++ +D PFR+W + TLPLG
Sbjct: 22 VIAIDGDPFREWQRTSRTLPLG 43
>UniRef50_Q5YW59 Cluster: Putative phosphoglycerate mutase; n=2;
Actinomycetales|Rep: Putative phosphoglycerate mutase -
Nocardia farcinica
Length = 234
Score = 31.5 bits (68), Expect = 8.8
Identities = 21/50 (42%), Positives = 23/50 (46%)
Frame = +3
Query: 57 WHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRA 206
W RA +R R+ EL PAA RL PQ H R R G YRA
Sbjct: 102 WSPPRAVLDERLRDREMGVLELHPPAAIRRLAPQEAHR-RIRQGEWAYRA 150
>UniRef50_A4XD62 Cluster: Squalene/phytoene synthase; n=1;
Salinispora tropica CNB-440|Rep: Squalene/phytoene
synthase - Salinispora tropica CNB-440
Length = 312
Score = 31.5 bits (68), Expect = 8.8
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = +3
Query: 24 DPTKMGISRDHWHKRRATGGKRAPIRKKRKYELGRPAAN 140
D T+ G++RD RA G PIR+ +YE+ R A+
Sbjct: 189 DLTRFGVTRDDLLAARAAGRTSEPIRELIRYEVARAQAH 227
>UniRef50_A0WA04 Cluster: Putative uncharacterized protein; n=2;
Geobacter lovleyi SZ|Rep: Putative uncharacterized
protein - Geobacter lovleyi SZ
Length = 321
Score = 31.5 bits (68), Expect = 8.8
Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +2
Query: 74 HRWETCAHTQEEEV*VRASRCKHQARS-SAYPLRSFTWWK 190
HRW T H+Q E + A R +A++ SA +RSF WK
Sbjct: 3 HRWPTSLHSQTEAI-FHAVRSIREAKADSALGIRSFGSWK 41
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 481,729,210
Number of Sequences: 1657284
Number of extensions: 10219831
Number of successful extensions: 28171
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 27328
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28153
length of database: 575,637,011
effective HSP length: 93
effective length of database: 421,509,599
effective search space used: 23604537544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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