Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0376
(450 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC2C4.16c |rps801|rps8-1|40S ribosomal protein S8|Schizosaccha... 186 1e-48
SPAC521.05 |rps802|rps8-2|40S ribosomal protein S8|Schizosacchar... 186 1e-48
SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase ki... 28 0.58
SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16 |S... 28 0.76
SPBC29A10.12 |||HMG-box variant|Schizosaccharomyces pombe|chr 2|... 28 0.76
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 27 1.3
SPAC139.03 |||transcription factor, zf-fungal binuclear cluster ... 26 3.1
SPBC16H5.10c |prp43||ATP-dependent RNA helicase Prp43|Schizosacc... 26 3.1
SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyce... 26 3.1
SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein Ph... 25 4.1
SPBC530.05 |||transcription factor |Schizosaccharomyces pombe|ch... 25 5.4
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ... 25 5.4
SPBC530.01 |gyp1||GTPase activating protein Gyp1 |Schizosaccharo... 25 7.1
SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large... 25 7.1
SPAPB1A11.03 |||FMN dependent dehydrogenase|Schizosaccharomyces ... 24 9.4
SPAC6B12.15 |cpc2|rkp1|RACK1 homologue Cpc2|Schizosaccharomyces ... 24 9.4
>SPAC2C4.16c |rps801|rps8-1|40S ribosomal protein
S8|Schizosaccharomyces pombe|chr 1|||Manual
Length = 200
Score = 186 bits (453), Expect = 1e-48
Identities = 88/130 (67%), Positives = 103/130 (79%)
Frame = +3
Query: 36 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRL 215
MGI+RD HKR ATG KRA RKKRK+ELGR +NTR+GP+RIH VR RGGN K+RALRL
Sbjct: 1 MGITRDSRHKRSATGAKRAQYRKKRKFELGRQPSNTRIGPKRIHEVRVRGGNKKFRALRL 60
Query: 216 DTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLP 395
D+GNFSWGSE ++KTRII V Y+ SNNELVRT TL K+AIV +DA PFR WYE+HY +
Sbjct: 61 DSGNFSWGSEGVSKKTRIIQVAYHPSNNELVRTNTLTKSAIVQIDAAPFRVWYETHYGIL 120
Query: 396 LGRKXGAKLT 425
+G K G K T
Sbjct: 121 MGSK-GKKAT 129
>SPAC521.05 |rps802|rps8-2|40S ribosomal protein
S8|Schizosaccharomyces pombe|chr 1|||Manual
Length = 200
Score = 186 bits (453), Expect = 1e-48
Identities = 88/130 (67%), Positives = 103/130 (79%)
Frame = +3
Query: 36 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRL 215
MGI+RD HKR ATG KRA RKKRK+ELGR +NTR+GP+RIH VR RGGN K+RALRL
Sbjct: 1 MGITRDSRHKRSATGAKRAQYRKKRKFELGRQPSNTRIGPKRIHEVRVRGGNKKFRALRL 60
Query: 216 DTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLP 395
D+GNFSWGSE ++KTRII V Y+ SNNELVRT TL K+AIV +DA PFR WYE+HY +
Sbjct: 61 DSGNFSWGSEGVSKKTRIIQVAYHPSNNELVRTNTLTKSAIVQIDAAPFRVWYETHYGIL 120
Query: 396 LGRKXGAKLT 425
+G K G K T
Sbjct: 121 MGSK-GKKAT 129
>SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase kinase
Win1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1436
Score = 28.3 bits (60), Expect = 0.58
Identities = 22/76 (28%), Positives = 33/76 (43%), Gaps = 2/76 (2%)
Frame = +3
Query: 48 RDHWHKRRATGGKRAPIRKKRKY--ELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDT 221
RD +K + G K+ + EL +N + Q+ + S T YRA+ LDT
Sbjct: 1083 RDRLYKSQLIGRVLDDTTKENRLLKELASSKSNITIRWQQGGLIGSGSFGTVYRAVNLDT 1142
Query: 222 GNFSWGSECSTRKTRI 269
G+ E + K RI
Sbjct: 1143 GDLMAVKEVALHKPRI 1158
>SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 672
Score = 27.9 bits (59), Expect = 0.76
Identities = 26/83 (31%), Positives = 39/83 (46%)
Frame = +3
Query: 129 PAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELV 308
P NT + PQ RSR T R+L +G S S ++ +TR V +AS+N L+
Sbjct: 530 PLQNTVISPQPTR--RSR---TPIRSL---SGRSSVASSRNSSRTRSYSNVSSASSNSLI 581
Query: 309 RTKTLVKNAIVVVDATPFRQWYE 377
+ ++ V TPF +E
Sbjct: 582 SIISSKPSSSTVQRQTPFHSPFE 604
>SPBC29A10.12 |||HMG-box variant|Schizosaccharomyces pombe|chr
2|||Manual
Length = 207
Score = 27.9 bits (59), Expect = 0.76
Identities = 17/54 (31%), Positives = 26/54 (48%)
Frame = +3
Query: 51 DHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALR 212
+ W K T K+ +KRK L R A RL + + S+ S+GG +A +
Sbjct: 32 EKWSKGVKTN-KKEQEAEKRKAALERKAERERLEKEEMESLPSKGGKGSKKAAK 84
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 27.1 bits (57), Expect = 1.3
Identities = 23/88 (26%), Positives = 33/88 (37%), Gaps = 5/88 (5%)
Frame = +3
Query: 51 DHWHKRRATGGKRAPIRKKRKY-----ELGRPAANTRLGPQRIHSVRSRGGNTKYRALRL 215
D W +A G +PIR+ ++Y + +PA R H R K R + +
Sbjct: 758 DEWKASKAFGANDSPIRENKRYKHNKLQTPKPADKFR---DNYHKQNKRNREAKERGIGI 814
Query: 216 DTGNFSWGSECSTRKTRIIDVVYNASNN 299
N S RK R + A NN
Sbjct: 815 KV-NSELKSAVEIRKARELKEKRLAKNN 841
>SPAC139.03 |||transcription factor, zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 1|||Manual
Length = 625
Score = 25.8 bits (54), Expect = 3.1
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = +3
Query: 24 DPTKMGISRDHWHKRRATGGKRAPIRKKRKYELGRPAAN 140
+ TK G + RRA A RKK K + GRP +N
Sbjct: 3 ETTKSGSKKSGQTSRRAIHSCLACRRKKLKCDHGRPCSN 41
>SPBC16H5.10c |prp43||ATP-dependent RNA helicase
Prp43|Schizosaccharomyces pombe|chr 2|||Manual
Length = 735
Score = 25.8 bits (54), Expect = 3.1
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -3
Query: 373 YHCLNGVASTTTIAFLTRVFVRTNS 299
++C N V S T + + VFVR NS
Sbjct: 518 FYCSNEVLSLTALLSVPNVFVRPNS 542
>SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 817
Score = 25.8 bits (54), Expect = 3.1
Identities = 15/60 (25%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Frame = +3
Query: 234 WGSEC--STRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRK 407
WGS+ +K + +V+ +++ + +T L AT F + +S+Y +PL R+
Sbjct: 250 WGSQSYLQEKKAGLAEVLNISTSQQKPKTTALDYEVFRHEMATKFSSFADSYYPVPLDRE 309
>SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein
Phf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 538
Score = 25.4 bits (53), Expect = 4.1
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -3
Query: 295 LDALYTTSMIRVLRVEHSDPQEKLPVSRR 209
L+ + T S +V R H DP KLP RR
Sbjct: 193 LEGVKTKSGRKVHRPNHFDPLVKLPTRRR 221
>SPBC530.05 |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 743
Score = 25.0 bits (52), Expect = 5.4
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = -3
Query: 400 PRGNV*CDSYHCLNGVASTTTIAFLTRVFVRTNSLLDAL 284
P ++ + +CL V + I+F T FVR N ++DAL
Sbjct: 544 PLASICSEDLNCLISVKNRL-ISFETHGFVRLNVVMDAL 581
>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1894
Score = 25.0 bits (52), Expect = 5.4
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = +1
Query: 142 PGSVLSVSTPFVHVVEILSTVRCVWTPVTSLG 237
P VLS P++ + L + C+W P LG
Sbjct: 682 PILVLSTMKPYLCNITFLGSHLCIWQPKILLG 713
>SPBC530.01 |gyp1||GTPase activating protein Gyp1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 514
Score = 24.6 bits (51), Expect = 7.1
Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Frame = +3
Query: 24 DP-TKMGISRDHWHKRRATGGKRAPIR 101
DP T + SR H H+ R+T K P R
Sbjct: 27 DPVTVLDRSRTHHHRGRSTSSKAQPFR 53
>SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large
subunit Rpc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1405
Score = 24.6 bits (51), Expect = 7.1
Identities = 8/19 (42%), Positives = 14/19 (73%)
Frame = +2
Query: 317 DPCQECNCCSRCNSIQAVV 373
D C++ CS+C+++Q VV
Sbjct: 145 DHCKKMRRCSKCDAMQGVV 163
>SPAPB1A11.03 |||FMN dependent dehydrogenase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 407
Score = 24.2 bits (50), Expect = 9.4
Identities = 9/12 (75%), Positives = 11/12 (91%)
Frame = +1
Query: 367 SGMSRIIRCLLG 402
SG+S +IRCLLG
Sbjct: 368 SGVSHVIRCLLG 379
>SPAC6B12.15 |cpc2|rkp1|RACK1 homologue Cpc2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 314
Score = 24.2 bits (50), Expect = 9.4
Identities = 8/11 (72%), Positives = 10/11 (90%)
Frame = -2
Query: 329 LDKGLCTHQFI 297
L+KG CTHQF+
Sbjct: 92 LEKGECTHQFV 102
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,948,406
Number of Sequences: 5004
Number of extensions: 41081
Number of successful extensions: 118
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 166231220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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