Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0376
         (450 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39807| Best HMM Match : Ribosomal_S8e (HMM E-Value=0)              188   1e-48
SB_22712| Best HMM Match : Ribosomal_S8e (HMM E-Value=0.068)           56   2e-08
SB_17079| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.77 
SB_37792| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.3  
SB_37693| Best HMM Match : PHD (HMM E-Value=8.7e-35)                   29   1.3  
SB_4689| Best HMM Match : Dicty_CTDC (HMM E-Value=5.8)                 29   2.3  
SB_1748| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.3  
SB_56915| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.4  
SB_11683| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.2  
SB_36101| Best HMM Match : AlkA_N (HMM E-Value=0.047)                  27   9.5  
SB_54052| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.5  
SB_24724| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.5  
SB_16816| Best HMM Match : SRR1 (HMM E-Value=8.4)                      27   9.5  

>SB_39807| Best HMM Match : Ribosomal_S8e (HMM E-Value=0)
          Length = 192

 Score =  188 bits (459), Expect = 1e-48
 Identities = 85/119 (71%), Positives = 99/119 (83%)
 Frame = +3

Query: 93  PIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSECSTRKTRII 272
           P+R KRK+ELGRP ANT++G +RIH VR+RGGN K+RA RLDT NFSWGSE  TRK RII
Sbjct: 4   PLRHKRKFELGRPPANTKIGTKRIHEVRTRGGNRKFRAFRLDTENFSWGSESCTRKARII 63

Query: 273 DVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRKXGAKLTXAEEAIIN 449
           DVVYNASNNELVRTKTLVKN IV VD+TPFRQWYE+HY +P+GRK   + T  E+ I+N
Sbjct: 64  DVVYNASNNELVRTKTLVKNCIVQVDSTPFRQWYEAHYAIPIGRKKTKQPTEEEQEILN 122


>SB_22712| Best HMM Match : Ribosomal_S8e (HMM E-Value=0.068)
          Length = 147

 Score = 55.6 bits (128), Expect = 2e-08
 Identities = 24/77 (31%), Positives = 47/77 (61%)
 Frame = +3

Query: 153 PQRIHSVRSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKN 332
           P++I   ++ GG+TK +ALR++ G ++  S+    +  I+ V+++ +N E +    +VK 
Sbjct: 37  PEKIKERKAYGGHTKIKALRVNKGVYTLKSQGVEVEAPILSVMHSFANKEHIERNVIVKG 96

Query: 333 AIVVVDATPFRQWYESH 383
           +IV VD  PF  W++ +
Sbjct: 97  SIVQVDNKPFEDWFQEY 113


>SB_17079| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2537

 Score = 30.3 bits (65), Expect = 0.77
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +3

Query: 69  RATGGKRAPIRKKRKYELGRPAANTRLGP 155
           R  GG R P+++   +E  +P+ N R GP
Sbjct: 769 RRGGGSRVPVKRSSSFENRKPSPNRRRGP 797


>SB_37792| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 230

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 13/38 (34%), Positives = 24/38 (63%)
 Frame = +3

Query: 252 TRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFR 365
           T++ +I D++ N   N  VR +TL+ NA +++D   F+
Sbjct: 18  TKRKKIADILSNEIRN--VRERTLILNAALIIDICVFK 53


>SB_37693| Best HMM Match : PHD (HMM E-Value=8.7e-35)
          Length = 2049

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
 Frame = +3

Query: 12  VFFFDPTKMGISRDHWHKRRATG--GKRAPIRKKRKYELG 125
           VF   P+K   S+    K+ ATG  GK AP +KK+K+  G
Sbjct: 474 VFSDSPSKNKESKSTKRKKSATGGEGKEAPAKKKQKHNDG 513


>SB_4689| Best HMM Match : Dicty_CTDC (HMM E-Value=5.8)
          Length = 530

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 11/47 (23%), Positives = 24/47 (51%)
 Frame = -3

Query: 382 CDSYHCLNGVASTTTIAFLTRVFVRTNSLLDALYTTSMIRVLRVEHS 242
           CD+ HC   +  T+T+  + +V    + +   ++   ++ V R +HS
Sbjct: 448 CDNDHCSQELCLTSTVDQIQQVLNNCDKIKTQVHVEGLVEVWRKDHS 494


>SB_1748| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 683

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = +3

Query: 27  PTKMGISRDHWHKRRATGGKRAPIRKKRK-YELGRPAANTRLGPQRIHSV 173
           P    +S D W K++    K+  I+KKR+  +    A    LG QR+  +
Sbjct: 383 PKMQSLSYDEWLKQKREQDKKQAIKKKREIIDSHLDAVVAELGKQRVERI 432


>SB_56915| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 720

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = +2

Query: 251 NSQNPYH*CCV*CI*Q*-IGAYKDPCQECNCCSRCNSI 361
           +S   YH C   C+    I  Y DP  EC  CS+C+ +
Sbjct: 192 DSLEVYHECFGGCVGTLEIELYTDPYAECVTCSQCDGV 229


>SB_11683| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 204

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 15/46 (32%), Positives = 20/46 (43%)
 Frame = +3

Query: 66  RRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYR 203
           RR  GG R+P  + R+    R     R  P      RSR G+ + R
Sbjct: 104 RRRYGGGRSPSPRGRRRSRSRSPVRRRRSPSLERRSRSRSGSRERR 149


>SB_36101| Best HMM Match : AlkA_N (HMM E-Value=0.047)
          Length = 694

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 21/50 (42%), Positives = 26/50 (52%)
 Frame = -3

Query: 343 TTIAFLTRVFVRTNSLLDALYTTSMIRVLRVEHSDPQEKLPVSRRSARYL 194
           T +AFLT V VR  S  D+      +  LR +    +EKL  S  SARYL
Sbjct: 85  TVMAFLTGV-VRGVSWADS--ERDALEALRTQTKKIEEKLVASLVSARYL 131


>SB_54052| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 592

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = -2

Query: 353 CIYYNNCILDKGLCTHQFIVRCIIHNINDT 264
           C+Y  N I +  +CT  FI    IH   D+
Sbjct: 237 CLYEENLIFEDPICTQMFIEGLQIHLFPDS 266


>SB_24724| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2021

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
 Frame = -3

Query: 391 NV*CDSY-HCLNGVASTTTIAFLTRV-FVRTNSLLDALYTTSMIRVLRVEHSDPQEKLPV 218
           +V C+S+ +   GV +   + F  +V  V+  SL  ALY   +I +LR+E      + P+
Sbjct: 655 DVICNSFRNSSRGVLTDIGVIFGQQVGMVQFASLYSALYEHRVIGILRIEPISDNRRPPL 714

Query: 217 S 215
           S
Sbjct: 715 S 715


>SB_16816| Best HMM Match : SRR1 (HMM E-Value=8.4)
          Length = 195

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 22/64 (34%), Positives = 30/64 (46%)
 Frame = +3

Query: 141 TRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKT 320
           TR+  Q    + S+G N   R L L   N    +E S R     D  +N++N ELV   T
Sbjct: 74  TRVVAQPNAQINSKGQN---RFLILIVRNNKHLNERSRRAIDYFDRYFNSANFELVTRFT 130

Query: 321 LVKN 332
            +KN
Sbjct: 131 SIKN 134


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,134,402
Number of Sequences: 59808
Number of extensions: 340659
Number of successful extensions: 812
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 768
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 810
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 896151577
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)