Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0376
(450 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X67247-1|CAA47670.1| 208|Homo sapiens ribosomal protein S8 prot... 254 1e-67
BC070875-1|AAH70875.1| 208|Homo sapiens ribosomal protein S8 pr... 254 1e-67
AL592166-7|CAI13003.1| 208|Homo sapiens ribosomal protein S8 pr... 254 1e-67
AB062401-1|BAB93488.1| 208|Homo sapiens ribosomal protein S8 pr... 254 1e-67
AL592166-8|CAI13002.1| 188|Homo sapiens ribosomal protein S8 pr... 193 2e-49
AK127331-1|BAC86934.1| 178|Homo sapiens , member 1 (TRPV1). pr... 29 5.5
AB016767-1|BAA74724.1| 523|Homo sapiens telomerase transcriptas... 29 5.5
AE006464-22|AAK61254.1| 1053|Homo sapiens Similar to pre-pro-meg... 29 7.3
AL834429-1|CAD39090.1| 1064|Homo sapiens hypothetical protein pr... 29 9.7
AB046802-1|BAB13408.2| 1740|Homo sapiens KIAA1582 protein protein. 29 9.7
>X67247-1|CAA47670.1| 208|Homo sapiens ribosomal protein S8
protein.
Length = 208
Score = 254 bits (621), Expect = 1e-67
Identities = 114/138 (82%), Positives = 124/138 (89%)
Frame = +3
Query: 36 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRL 215
MGISRD+WHKRR TGGKR P KKRKYELGRPAANT++GP+RIH+VR RGGN KYRALRL
Sbjct: 1 MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRL 60
Query: 216 DTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLP 395
D GNFSWGSEC TRKTRIIDVVYNASNNELVRTKTLVKN IV++D+TP+RQWYESHY LP
Sbjct: 61 DVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALP 120
Query: 396 LGRKXGAKLTXAEEAIIN 449
LGRK GAKLT EE I+N
Sbjct: 121 LGRKKGAKLTPEEEEILN 138
>BC070875-1|AAH70875.1| 208|Homo sapiens ribosomal protein S8
protein.
Length = 208
Score = 254 bits (621), Expect = 1e-67
Identities = 114/138 (82%), Positives = 124/138 (89%)
Frame = +3
Query: 36 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRL 215
MGISRD+WHKRR TGGKR P KKRKYELGRPAANT++GP+RIH+VR RGGN KYRALRL
Sbjct: 1 MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRL 60
Query: 216 DTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLP 395
D GNFSWGSEC TRKTRIIDVVYNASNNELVRTKTLVKN IV++D+TP+RQWYESHY LP
Sbjct: 61 DVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALP 120
Query: 396 LGRKXGAKLTXAEEAIIN 449
LGRK GAKLT EE I+N
Sbjct: 121 LGRKKGAKLTPEEEEILN 138
>AL592166-7|CAI13003.1| 208|Homo sapiens ribosomal protein S8
protein.
Length = 208
Score = 254 bits (621), Expect = 1e-67
Identities = 114/138 (82%), Positives = 124/138 (89%)
Frame = +3
Query: 36 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRL 215
MGISRD+WHKRR TGGKR P KKRKYELGRPAANT++GP+RIH+VR RGGN KYRALRL
Sbjct: 1 MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRL 60
Query: 216 DTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLP 395
D GNFSWGSEC TRKTRIIDVVYNASNNELVRTKTLVKN IV++D+TP+RQWYESHY LP
Sbjct: 61 DVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALP 120
Query: 396 LGRKXGAKLTXAEEAIIN 449
LGRK GAKLT EE I+N
Sbjct: 121 LGRKKGAKLTPEEEEILN 138
>AB062401-1|BAB93488.1| 208|Homo sapiens ribosomal protein S8
protein.
Length = 208
Score = 254 bits (621), Expect = 1e-67
Identities = 114/138 (82%), Positives = 124/138 (89%)
Frame = +3
Query: 36 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRL 215
MGISRD+WHKRR TGGKR P KKRKYELGRPAANT++GP+RIH+VR RGGN KYRALRL
Sbjct: 1 MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRL 60
Query: 216 DTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLP 395
D GNFSWGSEC TRKTRIIDVVYNASNNELVRTKTLVKN IV++D+TP+RQWYESHY LP
Sbjct: 61 DVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALP 120
Query: 396 LGRKXGAKLTXAEEAIIN 449
LGRK GAKLT EE I+N
Sbjct: 121 LGRKKGAKLTPEEEEILN 138
>AL592166-8|CAI13002.1| 188|Homo sapiens ribosomal protein S8
protein.
Length = 188
Score = 193 bits (471), Expect = 2e-49
Identities = 97/138 (70%), Positives = 107/138 (77%)
Frame = +3
Query: 36 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRL 215
MGISRD+WHKRR TGGKR P KKRKYELGRPAANT++GP+RIH+VR RGG
Sbjct: 1 MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGG--------- 51
Query: 216 DTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLP 395
C TRKTRIIDVVYNASNNELVRTKTLVKN IV++D+TP+RQWYESHY LP
Sbjct: 52 ----------C-TRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALP 100
Query: 396 LGRKXGAKLTXAEEAIIN 449
LGRK GAKLT EE I+N
Sbjct: 101 LGRKKGAKLTPEEEEILN 118
>AK127331-1|BAC86934.1| 178|Homo sapiens , member 1 (TRPV1).
protein.
Length = 178
Score = 29.5 bits (63), Expect = 5.5
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +3
Query: 330 NAIVVVDATPFRQWYESHYTLPLGRKXGAKLT 425
N I+ V TPF W + H++ P G LT
Sbjct: 5 NPIIAVFRTPFAPWLQFHWSAPFSAWLGTVLT 36
>AB016767-1|BAA74724.1| 523|Homo sapiens telomerase transcriptase
protein.
Length = 523
Score = 29.5 bits (63), Expect = 5.5
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = -3
Query: 265 RVLRVEHSDPQEKLPVSRRSARYLVFPPRERTE 167
R R E PQ+ + V RS R L PPR RT+
Sbjct: 411 RTARCELRSPQQPVSVPGRSPRALWRPPRRRTQ 443
>AE006464-22|AAK61254.1| 1053|Homo sapiens Similar to
pre-pro-megakarycyte potentiating factor precursor
protein.
Length = 1053
Score = 29.1 bits (62), Expect = 7.3
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = -1
Query: 108 SSCVWAHVSHRWPFAYAS 55
+SC WA HRWP + S
Sbjct: 221 TSCAWAQAVHRWPVLWGS 238
>AL834429-1|CAD39090.1| 1064|Homo sapiens hypothetical protein
protein.
Length = 1064
Score = 28.7 bits (61), Expect = 9.7
Identities = 20/62 (32%), Positives = 28/62 (45%)
Frame = -2
Query: 212 TQRTVLSISTT*TNGVDTLRTEPGVCSGTP*LILPLLAYGRTFPTGGPSLMPVIPTNTHL 33
T T + +TT +N + T P +GT PLL GR +G MP + + T
Sbjct: 131 TTNTTTTTTTTTSNTTHRVETPPPHQAGTQLNRSPLLGPGRKVSSGWGE-MPNVHSKTEN 189
Query: 32 SW 27
SW
Sbjct: 190 SW 191
>AB046802-1|BAB13408.2| 1740|Homo sapiens KIAA1582 protein protein.
Length = 1740
Score = 28.7 bits (61), Expect = 9.7
Identities = 20/62 (32%), Positives = 28/62 (45%)
Frame = -2
Query: 212 TQRTVLSISTT*TNGVDTLRTEPGVCSGTP*LILPLLAYGRTFPTGGPSLMPVIPTNTHL 33
T T + +TT +N + T P +GT PLL GR +G MP + + T
Sbjct: 807 TTNTTTTTTTTTSNTTHRVETPPPHQAGTQLNRSPLLGPGRKVSSGWGE-MPNVHSKTEN 865
Query: 32 SW 27
SW
Sbjct: 866 SW 867
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 72,397,639
Number of Sequences: 237096
Number of extensions: 1643503
Number of successful extensions: 3497
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3306
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3497
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 3701294870
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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