Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0376
         (450 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40799-7|AAA81485.1|  208|Caenorhabditis elegans Ribosomal prote...   209   6e-55
U66260-1|AAB07021.1| 1540|Caenorhabditis elegans multidrug resis...    31   0.29 
U41554-8|ABA03118.1| 1534|Caenorhabditis elegans Multidrug resis...    31   0.29 
U41554-7|AAM69107.1| 1534|Caenorhabditis elegans Multidrug resis...    31   0.29 
U41554-6|AAL06032.1| 1534|Caenorhabditis elegans Multidrug resis...    31   0.29 
U41554-5|AAD31550.2| 1528|Caenorhabditis elegans Multidrug resis...    31   0.29 
AB199793-1|BAD88409.1| 1534|Caenorhabditis elegans multidrug res...    31   0.29 
L14745-8|AAA27923.1|  244|Caenorhabditis elegans Tetraspanin fam...    28   3.6  
AL117205-7|CAB55160.1|  293|Caenorhabditis elegans Hypothetical ...    28   3.6  
Z75539-1|CAA99843.1|  672|Caenorhabditis elegans Hypothetical pr...    27   8.3  
U41992-1|AAA83354.2|  514|Caenorhabditis elegans Importin alpha ...    27   8.3  
U20861-9|AAN84854.1|  192|Caenorhabditis elegans Hypothetical pr...    27   8.3  
AL032651-1|CAB60580.1|  681|Caenorhabditis elegans Hypothetical ...    27   8.3  
AF040995-1|AAB97171.1|  514|Caenorhabditis elegans importin alph...    27   8.3  
AF005266-1|AAQ13407.1|  423|Caenorhabditis elegans importin alph...    27   8.3  

>U40799-7|AAA81485.1|  208|Caenorhabditis elegans Ribosomal protein,
           small subunitprotein 8 protein.
          Length = 208

 Score =  209 bits (511), Expect = 6e-55
 Identities = 95/138 (68%), Positives = 111/138 (80%)
 Frame = +3

Query: 36  MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRL 215
           MGISRD WHKR  TG  +    KKRK+ELGRPAANT++G  R+  VR+RGGN KYRALRL
Sbjct: 1   MGISRDSWHKRYKTGATQPVPHKKRKFELGRPAANTKIGAHRVRLVRTRGGNEKYRALRL 60

Query: 216 DTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLP 395
           D+GNFSW SE +TRKTRI+D +YNA+NNELVRTKTLVK AI+ VDA PFRQWYE+HY LP
Sbjct: 61  DSGNFSWASEQTTRKTRIVDTMYNATNNELVRTKTLVKGAIISVDAAPFRQWYEAHYALP 120

Query: 396 LGRKXGAKLTXAEEAIIN 449
           L RK  AKL+  + AI+N
Sbjct: 121 LARKKNAKLSEEDNAILN 138


>U66260-1|AAB07021.1| 1540|Caenorhabditis elegans multidrug
           resistance related protein1 protein.
          Length = 1540

 Score = 31.5 bits (68), Expect = 0.29
 Identities = 13/35 (37%), Positives = 23/35 (65%)
 Frame = +3

Query: 204 ALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELV 308
           A+++D G+F+WGS+   RK  + D+ +N    +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645


>U41554-8|ABA03118.1| 1534|Caenorhabditis elegans Multidrug
           resistance protein familyprotein 1, isoform e protein.
          Length = 1534

 Score = 31.5 bits (68), Expect = 0.29
 Identities = 13/35 (37%), Positives = 23/35 (65%)
 Frame = +3

Query: 204 ALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELV 308
           A+++D G+F+WGS+   RK  + D+ +N    +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645


>U41554-7|AAM69107.1| 1534|Caenorhabditis elegans Multidrug
           resistance protein familyprotein 1, isoform c protein.
          Length = 1534

 Score = 31.5 bits (68), Expect = 0.29
 Identities = 13/35 (37%), Positives = 23/35 (65%)
 Frame = +3

Query: 204 ALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELV 308
           A+++D G+F+WGS+   RK  + D+ +N    +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645


>U41554-6|AAL06032.1| 1534|Caenorhabditis elegans Multidrug
           resistance protein familyprotein 1, isoform b protein.
          Length = 1534

 Score = 31.5 bits (68), Expect = 0.29
 Identities = 13/35 (37%), Positives = 23/35 (65%)
 Frame = +3

Query: 204 ALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELV 308
           A+++D G+F+WGS+   RK  + D+ +N    +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645


>U41554-5|AAD31550.2| 1528|Caenorhabditis elegans Multidrug
           resistance protein familyprotein 1, isoform a protein.
          Length = 1528

 Score = 31.5 bits (68), Expect = 0.29
 Identities = 13/35 (37%), Positives = 23/35 (65%)
 Frame = +3

Query: 204 ALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELV 308
           A+++D G+F+WGS+   RK  + D+ +N    +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645


>AB199793-1|BAD88409.1| 1534|Caenorhabditis elegans multidrug
           resistance-associatedprotein protein.
          Length = 1534

 Score = 31.5 bits (68), Expect = 0.29
 Identities = 13/35 (37%), Positives = 23/35 (65%)
 Frame = +3

Query: 204 ALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELV 308
           A+++D G+F+WGS+   RK  + D+ +N    +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645


>L14745-8|AAA27923.1|  244|Caenorhabditis elegans Tetraspanin family
           protein 1 protein.
          Length = 244

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 10/19 (52%), Positives = 16/19 (84%)
 Frame = -3

Query: 307 TNSLLDALYTTSMIRVLRV 251
           TNSL+DA+YTT+ +  L++
Sbjct: 133 TNSLIDAMYTTNSVNDLKI 151


>AL117205-7|CAB55160.1|  293|Caenorhabditis elegans Hypothetical
           protein Y116A8A.8 protein.
          Length = 293

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = +3

Query: 246 CSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQ 368
           CS +    I   ++A+NN ++  KT   N I     TPF Q
Sbjct: 51  CSIQNLMYIQKRFSANNNMIIALKTDTINEITESVCTPFEQ 91


>Z75539-1|CAA99843.1|  672|Caenorhabditis elegans Hypothetical
           protein F28C1.1 protein.
          Length = 672

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
 Frame = +3

Query: 39  GISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHS-VRSRGGNTKYRALRL 215
           G++R  W + R+    R+P R++ +    R     R  P+R +S  RSR  + + R+   
Sbjct: 394 GMNRRSWSRSRSRSRSRSPPRRRSR---SRSRTRDRRRPRRSNSRRRSRSRDRQRRSRSR 450

Query: 216 DTGNFS 233
           D   +S
Sbjct: 451 DRRRYS 456


>U41992-1|AAA83354.2|  514|Caenorhabditis elegans Importin alpha
           family protein 3 protein.
          Length = 514

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 15/54 (27%), Positives = 27/54 (50%)
 Frame = -3

Query: 190 FPPRERTEWIR*GPSLVFAAGRPNSYFLFLRMGARFPPVALRLCQ*SRLIPILV 29
           FP ++   W     S V  +GRPN     +++G   P  A+  C  S++I +++
Sbjct: 375 FPTQKEAAW---AISNVTISGRPNQVEQMVKLGVLRPFCAMLSCTDSQIIQVVL 425


>U20861-9|AAN84854.1|  192|Caenorhabditis elegans Hypothetical
           protein C28H8.9b protein.
          Length = 192

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 11/40 (27%), Positives = 16/40 (40%)
 Frame = +3

Query: 27  PTKMGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTR 146
           P + G   D W  R+   G   P++K         A NT+
Sbjct: 149 PDEFGSDEDDWSSRKRRKGNLGPVQKATSSRKKNAARNTK 188


>AL032651-1|CAB60580.1|  681|Caenorhabditis elegans Hypothetical
           protein Y6D1A.1 protein.
          Length = 681

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 12/50 (24%), Positives = 23/50 (46%)
 Frame = +3

Query: 48  RDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTK 197
           R+        G +R+P R +R+  +  P  N  + P+R +  RS    ++
Sbjct: 55  RERMENLTLEGKRRSPPRVRREPPMRSPGRNEVMSPERRYGTRSASSRSQ 104


>AF040995-1|AAB97171.1|  514|Caenorhabditis elegans importin alpha 3
           protein.
          Length = 514

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 15/54 (27%), Positives = 27/54 (50%)
 Frame = -3

Query: 190 FPPRERTEWIR*GPSLVFAAGRPNSYFLFLRMGARFPPVALRLCQ*SRLIPILV 29
           FP ++   W     S V  +GRPN     +++G   P  A+  C  S++I +++
Sbjct: 375 FPTQKEAAW---AISNVTISGRPNQVEQMVKLGVLRPFCAMLSCTDSQIIQVVL 425


>AF005266-1|AAQ13407.1|  423|Caenorhabditis elegans importin alpha-3
           subunit protein.
          Length = 423

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 15/54 (27%), Positives = 27/54 (50%)
 Frame = -3

Query: 190 FPPRERTEWIR*GPSLVFAAGRPNSYFLFLRMGARFPPVALRLCQ*SRLIPILV 29
           FP ++   W     S V  +GRPN     +++G   P  A+  C  S++I +++
Sbjct: 284 FPTQKEAAW---AISNVTISGRPNQVEQMVKLGVLRPFCAMLSCTDSQIIQVVL 334


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,999,404
Number of Sequences: 27780
Number of extensions: 243094
Number of successful extensions: 783
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 739
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 783
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 788595652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)