Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0376
         (450 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8 ...   271   3e-75
DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein ...    24   0.88 
AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein ...    24   0.88 
DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein ...    22   2.7  
AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein ...    22   2.7  
D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         22   3.6  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    22   3.6  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    22   3.6  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    21   4.7  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    21   4.7  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    21   4.7  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    21   4.7  
DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein ...    21   6.2  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    21   6.2  
AJ973401-1|CAJ01448.1|  130|Apis mellifera hypothetical protein ...    21   6.2  
AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific pro...    21   6.2  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   8.2  

>AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8
           protein.
          Length = 208

 Score =  271 bits (664), Expect = 3e-75
 Identities = 122/138 (88%), Positives = 130/138 (94%)
 Frame = +3

Query: 36  MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRL 215
           MGISRDHWHKRRATGGKR PIRKKRK+ELGRPAANT+LGPQRIH+VR+RGGN KYRALRL
Sbjct: 1   MGISRDHWHKRRATGGKRKPIRKKRKFELGRPAANTKLGPQRIHTVRTRGGNKKYRALRL 60

Query: 216 DTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLP 395
           DTGNFSWGSEC+TRKTRIIDVVYNASNNELVRTKTLVKNAIV +DATPFRQWYE HY LP
Sbjct: 61  DTGNFSWGSECTTRKTRIIDVVYNASNNELVRTKTLVKNAIVTIDATPFRQWYEGHYVLP 120

Query: 396 LGRKXGAKLTXAEEAIIN 449
           LGRK GAKLT AEE ++N
Sbjct: 121 LGRKRGAKLTEAEEEVLN 138


>DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein 4
           protein.
          Length = 128

 Score = 23.8 bits (49), Expect = 0.88
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = -2

Query: 344 YNNCILDKGLCT 309
           Y NC+LD+G CT
Sbjct: 46  YVNCLLDQGPCT 57


>AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein
           protein.
          Length = 128

 Score = 23.8 bits (49), Expect = 0.88
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = -2

Query: 344 YNNCILDKGLCT 309
           Y NC+LD+G CT
Sbjct: 46  YVNCLLDQGPCT 57


>DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein 6
           protein.
          Length = 125

 Score = 22.2 bits (45), Expect = 2.7
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -2

Query: 344 YNNCILDKGLCTHQ 303
           Y  C+LD+G CT++
Sbjct: 43  YIKCMLDEGPCTNE 56


>AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein
           protein.
          Length = 125

 Score = 22.2 bits (45), Expect = 2.7
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -2

Query: 344 YNNCILDKGLCTHQ 303
           Y  C+LD+G CT++
Sbjct: 43  YIKCMLDEGPCTNE 56


>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 21.8 bits (44), Expect = 3.6
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -2

Query: 377 LIPLPEWSCIYYNNC 333
           L P P+WS   Y++C
Sbjct: 104 LQPYPDWSFAKYDDC 118


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.8 bits (44), Expect = 3.6
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -2

Query: 377 LIPLPEWSCIYYNNC 333
           L P P+WS   Y++C
Sbjct: 104 LQPYPDWSFAKYDDC 118


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.8 bits (44), Expect = 3.6
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -2

Query: 377 LIPLPEWSCIYYNNC 333
           L P P+WS   Y++C
Sbjct: 104 LQPYPDWSFAKYDDC 118


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 21.4 bits (43), Expect = 4.7
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -2

Query: 377 LIPLPEWSCIYYNNC 333
           L P P+WS   Y +C
Sbjct: 109 LQPYPDWSFAKYEDC 123


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 21.4 bits (43), Expect = 4.7
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -2

Query: 377 LIPLPEWSCIYYNNC 333
           L P P+WS   Y +C
Sbjct: 110 LRPYPDWSFAKYEDC 124


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 21.4 bits (43), Expect = 4.7
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -2

Query: 377 LIPLPEWSCIYYNNC 333
           L P P+WS   Y +C
Sbjct: 108 LQPYPDWSWANYKDC 122


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 21.4 bits (43), Expect = 4.7
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -2

Query: 377 LIPLPEWSCIYYNNC 333
           L P P+WS   Y +C
Sbjct: 108 LQPYPDWSWANYKDC 122


>DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein 3
           protein.
          Length = 130

 Score = 21.0 bits (42), Expect = 6.2
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = -2

Query: 344 YNNCILDKGLCT 309
           Y  C++D+G CT
Sbjct: 47  YFKCLMDEGRCT 58


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 21.0 bits (42), Expect = 6.2
 Identities = 10/38 (26%), Positives = 20/38 (52%)
 Frame = +3

Query: 255 RKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQ 368
           RK  + +VVY    N + +    V + I ++ A+P ++
Sbjct: 358 RKRPMHNVVYRPGENPVTQRLPAVLSRIGIILASPLKR 395


>AJ973401-1|CAJ01448.1|  130|Apis mellifera hypothetical protein
           protein.
          Length = 130

 Score = 21.0 bits (42), Expect = 6.2
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = -2

Query: 344 YNNCILDKGLCT 309
           Y  C++D+G CT
Sbjct: 47  YFKCLMDEGRCT 58


>AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific
           protein 3c precursor protein.
          Length = 130

 Score = 21.0 bits (42), Expect = 6.2
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = -2

Query: 344 YNNCILDKGLCT 309
           Y  C++D+G CT
Sbjct: 47  YFKCLMDEGRCT 58


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 20.6 bits (41), Expect = 8.2
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +1

Query: 10  VFSFLTQLRWVLVGITG 60
           + SF+T   W L+G+ G
Sbjct: 188 ISSFITNGEWDLLGVPG 204


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 135,840
Number of Sequences: 438
Number of extensions: 2896
Number of successful extensions: 24
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11820384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)